Repackage: per-split parquets + YAML configs (name=real/companion/per-tissue)

README.md

@@ -11,6 +11,71 @@ tags:
   - benchmark
 size_categories:
   - 100K<n<1M
+configs:
+  - config_name: real
+    data_files:
+      - split: train
+        path: real-*-train.parquet
+      - split: validation
+        path: real-*-val.parquet
+      - split: test
+        path: real-*-test.parquet
+  - config_name: companion
+    data_files:
+      - split: train
+        path: companion-*-train.parquet
+      - split: validation
+        path: companion-*-val.parquet
+      - split: test
+        path: companion-*-test.parquet
+  - config_name: real_lung
+    data_files:
+      - split: train
+        path: real-lung-train.parquet
+      - split: validation
+        path: real-lung-val.parquet
+      - split: test
+        path: real-lung-test.parquet
+  - config_name: real_prostate
+    data_files:
+      - split: train
+        path: real-prostate-train.parquet
+      - split: validation
+        path: real-prostate-val.parquet
+      - split: test
+        path: real-prostate-test.parquet
+  - config_name: real_skin
+    data_files:
+      - split: train
+        path: real-skin-train.parquet
+      - split: validation
+        path: real-skin-val.parquet
+      - split: test
+        path: real-skin-test.parquet
+  - config_name: companion_lung
+    data_files:
+      - split: train
+        path: companion-lung-train.parquet
+      - split: validation
+        path: companion-lung-val.parquet
+      - split: test
+        path: companion-lung-test.parquet
+  - config_name: companion_prostate
+    data_files:
+      - split: train
+        path: companion-prostate-train.parquet
+      - split: validation
+        path: companion-prostate-val.parquet
+      - split: test
+        path: companion-prostate-test.parquet
+  - config_name: companion_skin
+    data_files:
+      - split: train
+        path: companion-skin-train.parquet
+      - split: validation
+        path: companion-skin-val.parquet
+      - split: test
+        path: companion-skin-test.parquet
 ---
 
 # SenoMorph
@@ -33,10 +98,10 @@ Datasets & Benchmarks submission.
 | Companion (skin)  |  16,844 | 168,440 (×10)           |
 | **Companion total** | **87,391** | **873,910**       |
 
-Each instance carries five attributes: `tissue`, `cell_type_name`,
-`senescence_score`, `nuclear_area` (mask pixel count, threshold > 10),
-and `dapi_intensity` (mean intensity within mask). The image is a
-`64×64` grayscale uint8 DAPI crop.
+Each instance carries five attributes (paper §2 attribute card):
+`tissue`, `cell_type_name`, `senescence_score`, `nuclear_area` (mask
+pixel count, threshold > 10), and `dapi_intensity` (mean intensity
+within the mask). The image is a `64×64` grayscale uint8 DAPI crop.
 
 ## Splits
 
@@ -59,11 +124,49 @@ metric in the accompanying paper.
 
 ## Loading
 
+Available configs:
+
+| `name=` | Description |
+|---|---|
+| `real` | All three tissues, real DAPI cells |
+| `companion` | All three tissues, generated companion cells |
+| `real_lung` / `real_prostate` / `real_skin` | Real cells, single tissue |
+| `companion_lung` / `companion_prostate` / `companion_skin` | Companion cells, single tissue |
+
+Each config has `train`, `validation`, and `test` splits.
+
 ```python
 from datasets import load_dataset
 
-real = load_dataset('anon-neuripsdb26/SenoMorph', name='real', split='train')
-comp = load_dataset('anon-neuripsdb26/SenoMorph', name='companion', split='train')
+# Full real benchmark, training split (3 tissues combined)
+real_train = load_dataset('anon-neuripsdb26/SenoMorph', name='real', split='train')
+
+# Real lung test split only
+lung_test = load_dataset('anon-neuripsdb26/SenoMorph', name='real_lung', split='test')
+
+# Companion data (873,910 generated cells), train split
+comp_train = load_dataset('anon-neuripsdb26/SenoMorph', name='companion', split='train')
+
+# Companion skin only, validation split
+skin_val_comp = load_dataset('anon-neuripsdb26/SenoMorph', name='companion_skin', split='validation')
+```
+
+## Schema
+
+```
+image            PIL.Image (grayscale 64×64, PNG-encoded)
+tissue           str  ('lung' | 'prostate' | 'skin')
+cell_type_id     int32 (raw CellTypist integer)
+cell_type_name   str  ('Epithelial cells' | 'T cells' | 'Fibroblasts' | ...)
+senescence_score float32  in [0, 1]
+                     real: DeepScence min-max norm within tissue
+                     companion: target conditioning score from linspace(0,1,10)
+nuclear_area     int32  (mask pixel count, threshold > 10)
+dapi_intensity   float32 (mean intensity within mask)
+split            str  ('train' | 'val' | 'test')
+cell_id          int64
+                     real: row index in source set
+                     companion: source real cell id (10 companion rows share a cell_id)
 ```
 
 ## License

companion-lung-test.parquet

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companion-lung-train.parquet

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+size 105605557

companion-lung-val.parquet

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+size 15178166

companion-prostate-test.parquet

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companion-prostate-train.parquet

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companion-prostate-val.parquet

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companion-skin-test.parquet

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companion-skin-train.parquet

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companion-skin-val.parquet

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real-lung-test.parquet

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real-lung-train.parquet

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real-lung-val.parquet

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real-prostate-test.parquet

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real-prostate-train.parquet

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real-prostate-val.parquet

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real-skin-test.parquet

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real-skin-train.parquet

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real-skin-val.parquet

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