Upload CoPeP reviewer sample
Browse files- .gitattributes +0 -59
- README.md +43 -0
- dataset_manifest.json +26 -0
- train/train_sample.parquet +3 -0
- val/val.parquet +3 -0
.gitattributes
CHANGED
|
@@ -1,60 +1 @@
|
|
| 1 |
-
*.7z filter=lfs diff=lfs merge=lfs -text
|
| 2 |
-
*.arrow filter=lfs diff=lfs merge=lfs -text
|
| 3 |
-
*.avro filter=lfs diff=lfs merge=lfs -text
|
| 4 |
-
*.bin filter=lfs diff=lfs merge=lfs -text
|
| 5 |
-
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
| 6 |
-
*.ckpt filter=lfs diff=lfs merge=lfs -text
|
| 7 |
-
*.ftz filter=lfs diff=lfs merge=lfs -text
|
| 8 |
-
*.gz filter=lfs diff=lfs merge=lfs -text
|
| 9 |
-
*.h5 filter=lfs diff=lfs merge=lfs -text
|
| 10 |
-
*.joblib filter=lfs diff=lfs merge=lfs -text
|
| 11 |
-
*.lfs.* filter=lfs diff=lfs merge=lfs -text
|
| 12 |
-
*.lz4 filter=lfs diff=lfs merge=lfs -text
|
| 13 |
-
*.mds filter=lfs diff=lfs merge=lfs -text
|
| 14 |
-
*.mlmodel filter=lfs diff=lfs merge=lfs -text
|
| 15 |
-
*.model filter=lfs diff=lfs merge=lfs -text
|
| 16 |
-
*.msgpack filter=lfs diff=lfs merge=lfs -text
|
| 17 |
-
*.npy filter=lfs diff=lfs merge=lfs -text
|
| 18 |
-
*.npz filter=lfs diff=lfs merge=lfs -text
|
| 19 |
-
*.onnx filter=lfs diff=lfs merge=lfs -text
|
| 20 |
-
*.ot filter=lfs diff=lfs merge=lfs -text
|
| 21 |
*.parquet filter=lfs diff=lfs merge=lfs -text
|
| 22 |
-
*.pb filter=lfs diff=lfs merge=lfs -text
|
| 23 |
-
*.pickle filter=lfs diff=lfs merge=lfs -text
|
| 24 |
-
*.pkl filter=lfs diff=lfs merge=lfs -text
|
| 25 |
-
*.pt filter=lfs diff=lfs merge=lfs -text
|
| 26 |
-
*.pth filter=lfs diff=lfs merge=lfs -text
|
| 27 |
-
*.rar filter=lfs diff=lfs merge=lfs -text
|
| 28 |
-
*.safetensors filter=lfs diff=lfs merge=lfs -text
|
| 29 |
-
saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
| 30 |
-
*.tar.* filter=lfs diff=lfs merge=lfs -text
|
| 31 |
-
*.tar filter=lfs diff=lfs merge=lfs -text
|
| 32 |
-
*.tflite filter=lfs diff=lfs merge=lfs -text
|
| 33 |
-
*.tgz filter=lfs diff=lfs merge=lfs -text
|
| 34 |
-
*.wasm filter=lfs diff=lfs merge=lfs -text
|
| 35 |
-
*.xz filter=lfs diff=lfs merge=lfs -text
|
| 36 |
-
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 37 |
-
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 38 |
-
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
| 39 |
-
# Audio files - uncompressed
|
| 40 |
-
*.pcm filter=lfs diff=lfs merge=lfs -text
|
| 41 |
-
*.sam filter=lfs diff=lfs merge=lfs -text
|
| 42 |
-
*.raw filter=lfs diff=lfs merge=lfs -text
|
| 43 |
-
# Audio files - compressed
|
| 44 |
-
*.aac filter=lfs diff=lfs merge=lfs -text
|
| 45 |
-
*.flac filter=lfs diff=lfs merge=lfs -text
|
| 46 |
-
*.mp3 filter=lfs diff=lfs merge=lfs -text
|
| 47 |
-
*.ogg filter=lfs diff=lfs merge=lfs -text
|
| 48 |
-
*.wav filter=lfs diff=lfs merge=lfs -text
|
| 49 |
-
# Image files - uncompressed
|
| 50 |
-
*.bmp filter=lfs diff=lfs merge=lfs -text
|
| 51 |
-
*.gif filter=lfs diff=lfs merge=lfs -text
|
| 52 |
-
*.png filter=lfs diff=lfs merge=lfs -text
|
| 53 |
-
*.tiff filter=lfs diff=lfs merge=lfs -text
|
| 54 |
-
# Image files - compressed
|
| 55 |
-
*.jpg filter=lfs diff=lfs merge=lfs -text
|
| 56 |
-
*.jpeg filter=lfs diff=lfs merge=lfs -text
|
| 57 |
-
*.webp filter=lfs diff=lfs merge=lfs -text
|
| 58 |
-
# Video files - compressed
|
| 59 |
-
*.mp4 filter=lfs diff=lfs merge=lfs -text
|
| 60 |
-
*.webm filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
*.parquet filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
README.md
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: cc-by-4.0
|
| 3 |
+
pretty_name: CoPeP Reviewer Sample
|
| 4 |
+
task_categories:
|
| 5 |
+
- other
|
| 6 |
+
tags:
|
| 7 |
+
- protein
|
| 8 |
+
- biology
|
| 9 |
+
- continual-learning
|
| 10 |
+
- parquet
|
| 11 |
+
configs:
|
| 12 |
+
- config_name: default
|
| 13 |
+
data_files:
|
| 14 |
+
- split: train
|
| 15 |
+
path: train/train_sample.parquet
|
| 16 |
+
- split: validation
|
| 17 |
+
path: val/val.parquet
|
| 18 |
+
---
|
| 19 |
+
|
| 20 |
+
# CoPeP Reviewer Sample
|
| 21 |
+
|
| 22 |
+
This repository contains a compact deterministic sample of `anon2435/CoPeP` for
|
| 23 |
+
reviewer inspection. It is intended for checking file format, schema, and example
|
| 24 |
+
records without downloading the full dataset.
|
| 25 |
+
|
| 26 |
+
## Contents
|
| 27 |
+
|
| 28 |
+
- `train/train_sample.parquet`: deterministic stratified train-row sample.
|
| 29 |
+
- `val/val.parquet`: full validation parquet from the anonymous CoPeP release.
|
| 30 |
+
- `dataset_manifest.json`: sampling details, row counts, and limitations.
|
| 31 |
+
|
| 32 |
+
The train sample preserves the main dataset train-row schema:
|
| 33 |
+
`name`, `sequence`, `seq_hash`, `task_0` through `task_9`, and `row_idx`.
|
| 34 |
+
|
| 35 |
+
## Sampling
|
| 36 |
+
|
| 37 |
+
Rows are grouped by first observed temporal task, defined as the first true
|
| 38 |
+
`task_0` through `task_9` column. Up to 10,000 rows are selected per group using
|
| 39 |
+
a deterministic score derived from `seq_hash`, `row_idx`, and a fixed seed.
|
| 40 |
+
|
| 41 |
+
This sample is not a drop-in replacement for the full dataset. It does not
|
| 42 |
+
include task split files, because those files reference row indices in the full
|
| 43 |
+
training table.
|
dataset_manifest.json
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"repo_id": "anon2435/CoPeP-sample",
|
| 3 |
+
"source_repo_id": "anon2435/CoPeP",
|
| 4 |
+
"sample_type": "deterministic_stratified_review_sample",
|
| 5 |
+
"sampling_seed_hex": "0xc0de2026",
|
| 6 |
+
"sampling_method": "Rows are grouped by first observed temporal task, defined as the first true task_0...task_9 column. For each group, rows with the smallest deterministic splitmix64((seq_hash XOR row_idx) plus seed) scores are selected.",
|
| 7 |
+
"target_rows_per_first_observed_task": 10000,
|
| 8 |
+
"train_rows": 100000,
|
| 9 |
+
"first_observed_task_counts": {
|
| 10 |
+
"task_0": 10000,
|
| 11 |
+
"task_1": 10000,
|
| 12 |
+
"task_2": 10000,
|
| 13 |
+
"task_3": 10000,
|
| 14 |
+
"task_4": 10000,
|
| 15 |
+
"task_5": 10000,
|
| 16 |
+
"task_6": 10000,
|
| 17 |
+
"task_7": 10000,
|
| 18 |
+
"task_8": 10000,
|
| 19 |
+
"task_9": 10000
|
| 20 |
+
},
|
| 21 |
+
"files": {
|
| 22 |
+
"train": "train/train_sample.parquet",
|
| 23 |
+
"validation": "val/val.parquet"
|
| 24 |
+
},
|
| 25 |
+
"limitations": "This sample is for reviewer inspection of schema and example records. It is not a drop-in replacement for full CoPeP training, temporal split evaluation, or benchmark reproduction."
|
| 26 |
+
}
|
train/train_sample.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5f1ef78de77ad24509b9ee86a27179bf2f8e135d7a253542177d089c48a7a7fa
|
| 3 |
+
size 23328181
|
val/val.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:685b388577f1b1a0e5989ec020701c7a93f05454f5995774b87f32940db31089
|
| 3 |
+
size 5549540
|