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title: OpenEnv Pathway Analysis Environment
emoji: 🧬
colorFrom: blue
colorTo: green
sdk: docker
app_port: 8000
tags:
- openenv
- bioinformatics
- ai-agents
---
# OpenEnv Pathway Analysis Environment
This repository packages `pathway_analysis_env` for Hugging Face Hub publication.
## Contents
- `envs/pathway_analysis_env/` environment code
- reproducible GEO benchmark inputs for 3 tasks
- task expansion scripts:
- `create_geo_task.py`
- `append_task_to_manifest.py`
## Run locally
```bash
uv sync --all-extras
PYTHONPATH=src:envs uv run python envs/pathway_analysis_env/scripts/run_agent_eval_suite.py --manifest envs/pathway_analysis_env/data/eval_manifest_geo3.json
```
## Note on Spaces
Publishing as a Docker Space from a free user namespace may require Hugging Face PRO.
This repo is ready for maintainers to deploy under an entitled namespace.
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