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e918a5c | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | # Copyright (c) Meta Platforms, Inc. and affiliates.
# All rights reserved.
#
# This source code is licensed under the BSD-style license found in the
# LICENSE file in the root directory of this source tree.
"""
Pathway Analysis Environment for OpenEnv.
A toy computational-biology environment where an agent identifies the
activated signaling pathway from synthetic omics data.
Example:
>>> from pathway_analysis_env import PathwayEnv, PathwayAction
>>>
>>> with PathwayEnv(base_url="http://localhost:8000") as client:
... result = client.reset()
... result = client.step(PathwayAction(action_type="inspect_dataset"))
... result = client.step(PathwayAction(action_type="run_differential_expression"))
... result = client.step(PathwayAction(action_type="run_pathway_enrichment"))
... result = client.step(PathwayAction(action_type="submit_answer", hypothesis="MAPK signaling"))
"""
from .client import PathwayEnv
from .models import PathwayAction, PathwayObservation, PathwayState
__all__ = ["PathwayEnv", "PathwayAction", "PathwayObservation", "PathwayState"]
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