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README.md
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data_files:
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- split: test
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path: 2019_source/test-*
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---
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data_files:
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- split: test
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path: 2019_source/test-*
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license: cc-by-sa-4.0
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task_categories:
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- text-retrieval
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- text-classification
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language:
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- en
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tags:
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- medical
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pretty_name: TREC_Precision-Medicine
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size_categories:
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- 100K<n<1M
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---
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# TREC Precision Medicine (2017, 2018 and 2019)
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| | Links |
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|:-------------------------------:|:-------------:|
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| **Homepage:** | [TREC](https://www.trec-cds.org/) |
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| **Paper:** | [2017](https://trec.nist.gov/pubs/trec26/papers/Overview-PM.pdf) / [2018](https://trec.nist.gov/pubs/trec27/papers/Overview-PM.pdf) / [2019](https://trec.nist.gov/pubs/trec28/papers/OVERVIEW.PM.pdf) / [2020](https://trec.nist.gov/pubs/trec29/papers/OVERVIEW.PM.pdf) |
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| **Contact (Original Authors):** | Kirk Roberts (Kirk.Roberts@uth.tmc.edu ) |
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| **Contact (Curator):** | [Artur Guimarães](https://araag2.netlify.app/) (artur.guimas@gmail.com) |
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### Dataset Summary
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`This track focused on oncologists looking for evidence-based treatment literature and clinical trials.`
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### Data Instances
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#### Source Format
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```json
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{
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"query_id":"1",
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"disease":"melanoma",
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"gene":"BRAF (E586K)",
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"demographic":"64-year-old female",
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"doc_id":"NCT00001685",
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"relevance":0,
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"iteration":"0"
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}
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```
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### Data Fields
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#### Source Format
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TO:DO
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### Data Splits
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TO:DO
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## Additional Information
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### Dataset Curators
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#### Original Paper
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- Kirk Roberts - School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX
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Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
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- Dina Demner-Fushman - Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
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- Ellen M. Voorhees - Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD
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- William R. Hersh and Steven Bedrick - Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR
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- Alexander J. Lazar - Departments of Pathology & Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
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- Shubham Pant - Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX
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#### Huggingface Curator
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- [Artur Guimarães](https://araag2.netlify.app/) (artur.guimas@gmail.com) - INESC-ID / University of Lisbon - Instituto Superior Técnico
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### Licensing Information
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[CC BY-SA 4.0](https://creativecommons.org/licenses/by-sa/4.0/deed.en)
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### Citation Information
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```bibtex
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@inproceedings{roberts2017overview,
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title={Overview of the TREC 2017 precision medicine track},
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author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham},
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booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
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volume={26},
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pages={https--trec},
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year={2017}
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}
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@inproceedings{roberts2018overview,
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title={Overview of the TREC 2018 Precision Medicine Track},
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author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J},
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booktitle={27th Text REtrieval Conference, TREC 2018},
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year={2018}
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}
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@inproceedings{roberts2019overview,
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title={Overview of the TREC 2019 precision medicine track},
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author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham and Meric-Bernstam, Funda},
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booktitle={The... Text REtrieval Conference: TREC. Text REtrieval Conference},
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volume={1250},
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pages={https--trec},
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year={2019}
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}
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@inproceedings{roberts2020overview,
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title={Overview of the TREC 2020 precision medicine track},
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author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Bedrick, Steven and Hersh, William R},
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booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
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volume={1266},
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pages={https--trec},
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year={2020}
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}
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```
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### Contributions
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Thanks to [araag2](https://github.com/araag2) for adding this dataset.
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