[datasets]
replogle = "/data/replogle_nogwps_v2" # ADDS ALL h5 or h5ad files in this folder to training

# Training specifications
# All cell types in a dataset automatically go into training (excluding zeroshot/fewshot overrides)
[training]
replogle = "train"

# Zeroshot specifications - entire cell types go to val or test
[zeroshot]

# Fewshot specifications - explicit perturbation lists
[fewshot]
[fewshot."replogle.hepg2"]
test = ['GPS1', 'MRPL4', 'LONP1', 'CCT2', 'MVK', 'GSK3B', 'H3F3A', 'GART', 'RMI1', 'RPL6', 'MRPL34', 'WDHD1', 'UBE3C', 'HUWE1', 'NOP16', 'RABGGTA', 'HNRNPDL', 'SSU72', 'MED21', 'MRPS17', 'LYRM4', 'NSUN4', 'MALSU1', 'RAD51', 'MRPL38', 'RPL37A', 'DAP3', 'THOC1', 'PHB2', 'TXNL4B', 'NOL11', 'IARS2', 'GLE1', 'SNRNP27', 'CCNB1', 'SRBD1', 'TSEN54', 'NHP2', 'DDX6', 'UTP15', 'HNRNPH1', 'SMC1A', 'RNF14', 'ANAPC13', 'RPS3A', 'YARS', 'RRS1', 'STIL', 'EIF5A', 'EXOC1', 'EXOSC7', 'FKBP9', 'GPN3', 'MPHOSPH6', 'RAD51C', 'UTP20', 'SLC1A5', 'GTF2H4', 'POGZ', 'RPL23', 'GAR1', 'WDR18', 'NDUFAF3', 'ELP5', 'IPO11', 'GNL3L', 'KAT7', 'NFYB', 'MIPEP', 'XRCC6', 'PDAP1', 'UBR5', 'PITRM1', 'SRP14', 'WARS', 'STRIP1', 'ANAPC1', 'DDX5', 'CDC6', 'OIP5', 'NDUFS3', 'SUPT20H', 'HMGB3', 'TBCB', 'DARS', 'PRPF4', 'UBE2L3', 'TRMT6', 'KIAA0586', 'HNRNPK', 'NDUFA3', 'GABPB1', 'MRPS25', 'OSTC', 'USP14', 'POLR2I', 'NOC3L', 'MIS18BP1', 'RCL1', 'C12orf45', 'NLE1', 'LETM1', 'ZNF720', 'PPA2', 'TTC1', 'EIF2S3', 'GNPNAT1', 'RAMAC', 'MED8', 'RPL4', 'AAR2', 'DRAP1', 'DNTTIP2', 'PMF1', 'MRPL54', 'SF3B5', 'TFAM', 'SNRNP40', 'SRSF6', 'RPS19BP1', 'PRELID3B', 'RPF1', 'DDX21', 'CHERP', 'SNRPB', 'LRR1', 'PRKCA', 'RBM48', 'WDR12', 'RPL30', 'NUP54', 'RARS2', 'ATP6V1A', 'COX10', 'MRPL41', 'CEP68', 'MRPL3', 'RPS4X', 'PLK1', 'COPS4', 'CCAR1', 'SHQ1', 'SYS1', 'MRPL39', 'CCDC6', 'SRSF7', 'VPS29', 'PSMB5', 'CCDC115', 'TRAPPC11', 'CUL1', 'TMX2', 'RPL35A', 'TNPO3', 'DNAJA1', 'DHX36', 'ARGLU1', 'CBX1', 'TRNT1', 'THOC2', 'GTF3A', 'CS', 'SCAF1', 'ZDHHC7', 'ELP6', 'MRPL49', 'TMED10', 'SNRPD3', 'ZCCHC9', 'WDR33', 'POP7', 'COPS2', 'XPO1', 'BANP', 'GSPT1', 'TAZ', 'RPUSD4', 'XPO5', 'PMPCA', 'URB2', 'CSE1L', 'YARS2', 'PELP1', 'PPP2R3C', 'ATP6V1G1', 'ETF1', 'COG2', 'RNPC3', 'TM7SF2', 'BUB1', 'PPP2CA', 'AURKAIP1', 'MRPS33', 'GINS1', 'RPS27', 'LSM5', 'LSM10', 'PRPF4B', 'PFDN2', 'RPL18A', 'CHCHD2', 'KIF18B', 'TIMM10', 'RPP40', 'NAA50', 'PSMG2', 'CCDC59', 'PNO1', 'TP53RK', 'ATP2A2', 'USP10', 'PCBP1', 'SCAP', 'MRPS30', 'ICE1', 'SKP1', 'WDR1', 'TAF2', 'C1orf131', 'CSTF3', 'TAF1C', 'RPS7', 'PRPF3', 'GRPEL1', 'RAB4B', 'RUVBL2', 'MED26', 'PSMD4', 'GRSF1', 'JMJD6', 'BTAF1', 'PSMD14', 'CFL1', 'TRA2B', 'POLR3E', 'SNRPC', 'SEPHS2', 'CMTR1', 'MPHOSPH10', 'NFATC2IP', 'RPS12', 'ACTR1B', 'BTF3L4', 'BRCA1', 'MCMBP', 'MSRB1', 'POLD1', 'RPL23A', 'INO80', 'ATP5ME', 'CHCHD4', 'SBNO1', 'RFC3', 'MARS', 'TARS2', 'TARS', 'MTOR', 'TAF1B', 'GFER', 'MRPS7', 'PGS1', 'EXOC4', 'TOPBP1', 'TEAD3', 'CNOT1', 'MCM3AP', 'MCM7', 'CCDC86', 'MMS22L', 'GABPA', 'RAE1', 'PSME2', 'FAM32A', 'NFS1', 'EXOC7', 'TMSB10', 'COTL1', 'RAB6A', 'ENO1', 'SHC1', 'ELAC2', 'AURKA', 'VPS54', 'SRRM2', 'PTGR2', 'AARS', 'GTF3C1', 'NOL7', 'PTPMT1', 'TOP3A', 'SF3B4', 'ARL4D', 'PSMB2', 'DDX19A', 'COX7C', 'RPL32', 'DHX16', 'NVL', 'SRF', 'SUGT1', 'DCTN2', 'CTU2', 'TTC4', 'UHRF1', 'GTPBP4', 'HIPK1', 'PPP6C', 'ELOB', 'ASF1B', 'URM1', 'MED17', 'WDFY3', 'MRPS10', 'CCDC174', 'COPS5', 'TAF12', 'DENR', 'HDAC7', 'GTF2E1', 'OSGEP', 'EIF3L', 'BAG6', 'RBM28', 'TRAPPC4', 'PGPEP1', 'IMP4', 'RAB4A', 'MED11', 'CIAPIN1', 'H2AFZ', 'LSM6', 'POLR2G', 'TPX2', 'INTS11', 'DYNC1I2', 'EIF2S1', 'GYG1', 'EMC1', 'COASY', 'SP1', 'F8A1', 'NOL10', 'NAA20', 'CENPJ', 'THOC7', 'ANAPC10', 'RTTN', 'MED4', 'RBM17', 'NOLC1', 'PALB2', 'KRR1', 'HDAC3', 'TOMM40', 'POP1', 'RPS13', 'RPS27A', 'STXBP4', 'WDR5', 'CENPW', 'HGS', 'GTF2E2', 'XRN2', 'NUBP2', 'MBD3', 'TRAPPC5', 'MCM3', 'INTS1', 'DDX27', 'RIOK1', 'RPP14', 'RPL18', 'NCAPH2', 'TMEM127', 'EXOC3', 'LTV1', 'SKA3', 'BCR', 'NAA30', 'PI4KA', 'DCTN6', 'ZBTB17', 'TFRC', 'ATP6V1B2', 'TCOF1', 'FNBP4', 'HSD17B10', 'SPCS3', 'IWS1', 'PDCD6', 'TADA2B', 'NDUFA6', 'COQ4', 'IMPA2', 'MASTL', 'SMC6', 'RAD9A', 'POLL', 'INTS9', 'PABPC4', 'DDX52', 'ALG2', 'TSR2', 'PAF1', 'UFM1', 'INTS4', 'METAP2', 'CCNC', 'CCT4', 'GTF3C2', 'WDR83OS', 'SEPSECS', 'RFC5', 'SRRM1', 'MEX3A', 'RPA2', 'EIF4H', 'LSG1', 'KTI12', 'EIF4B', 'POP4', 'DLD', 'ARMC7', 'TUBGCP4', 'NMD3', 'MED30', 'ABCB7', 'AKIRIN2', 'E4F1', 'WBP1', 'MRPL32', 'EIF1AX', 'SEH1L', 'SMC5', 'ZC3H4', 'SNAPC2', 'PYURF', 'DNM1L', 'DHPS', 'EIF2B4', 'TIMM9', 'TRAPPC8', 'TAF7', 'CENPN', 'MTHFD1', 'DDX23', 'TINF2', 'FDXR', 'PSMC1', 'CENPK', 'EMC4', 'XRCC2', 'FASN', 'TFB1M', 'NAA15', 'ZNHIT1', 'EIF2B3', 'SHOC2', 'NKAP', 'ITGB1BP1', 'UFL1', 'PCNX3', 'RAD51D', 'GUK1', 'GMPPB', 'COQ5', 'SOD2', 'CCNH', 'TSFM', 'CDC45', 'ELL', 'BOD1L1', 'DDX17', 'RPP30', 'SUDS3', 'EIF2B2', 'COMTD1', 'IPO7', 'TIMM23B', 'E2F6', 'DAXX', 'SETD5', 'SYMPK', 'CCT8', 'POLR3F', 'INTS3', 'INTS13', 'DDX56', 'SRA1', 'ARL2', 'TAMM41', 'MAX', 'EBNA1BP2', 'MRPL16', 'CYREN', 'TPRKB', 'ANAPC11', 'COG1', 'MRPL51', 'ATP11B', 'AAAS', 'DPH3', 'non-targeting', 'MIOS', 'IARS', 'LPIN1', 'SEC61G', 'UBQLN4', 'THOC5', 'DDX1', 'UCHL5', 'MSL1', 'SLC39A9', 'TUBA1B', 'PRRC2A', 'ILF3', 'FCF1', 'PTEN', 'PGD', 'RBM4', 'RAC1', 'CALR', 'CTNNBL1', 'SCD', 'EIF4G2', 'DTL', 'SPATA5L1', 'BRF2', 'PXN', 'ANKLE2', 'RSL24D1', 'RPS2', 'CNOT9', 'GFOD2', 'ORC6', 'SLC39A7', 'GLRX5', 'ABHD11', 'PEX19', 'POLR3B', 'LSM4', 'RPL9', 'C19orf53', 'RPL28', 'ZNF787', 'CCT3', 'CTDP1', 'NACA', 'ERCC3', 'TNRC6A', 'METTL14', 'ELP3', 'PPIA', 'PET117', 'DCTN1', 'SDHAF2', 'PPME1', 'SURF6', 'SNAPC5', 'PPP1R15B', 'IMPDH2', 'UXT', 'BCLAF1', 'GTF2A1', 'URI1', 'PFN1', 'POLA1', 'ATP5MF', 'UTP11', 'MYBL2', 'SNRPD1', 'ACTR6', 'DNAJA3', 'UBAP1', 'MED14', 'GLRX3', 'NAA25', 'NUDT15', 'RNASEH2C', 'RPS3', 'CD3EAP', 'SDAD1', 'ZNHIT6', 'NSA2', 'SART3', 'HERC1', 'NUP133', 'MDN1', 'MRPS16', 'PYROXD1', 'PRPF31', 'CHCHD1', 'RPUSD3', 'POLG2', 'PPIL2', 'FAU', 'VPS35', 'UMPS', 'MED16', 'SNRNP35', 'C9orf78', 'NDUFB4', 'EIF4E', 'EXOSC2', 'MAK16', 'NARS2', 'ANKRD11', 'BMS1', 'NOB1', 'CCT7', 'PRPF8', 'RPL26', 'CHD4', 'PPP2R1A', 'TADA3', 'HAUS8', 'TP53I13', 'DRG1', 'C7orf26', 'RBM33', 'CHTOP', 'RPL10A', 'NAA10', 'ATF5', 'MYCBP', 'UBE2I', 'EXOSC3', 'ZFC3H1', 'BRF1', 'RTRAF', 'MRPS5', 'RPLP0', 'VARS', 'USP9X', 'ADRM1', 'RTCB', 'EIF4A1', 'PTCD3', 'LIMS1', 'GINS2', 'TUBG1', 'MLLT6', 'ATR', 'CUL2', 'RPS18', 'NUFIP1', 'TMEM242', 'C19orf25', 'NUP43', 'RPL10', 'DYNLL2', 'ISCA2', 'LSM3', 'NDUFB8', 'LAS1L', 'GNL2', 'DHX15', 'RPS6', 'SNAPC3', 'MBTPS1', 'NSMCE2', 'RPL24', 'ELOVL1', 'CD2BP2', 'SNRNP200', 'HSPA9', 'NOP9', 'FBXO42', 'HSD17B12', 'ATRIP', 'ANKRD39', 'KEAP1', 'HUS1', 'NPLOC4', 'TRAIP', 'RFC2', 'TUBD1', 'MCM6', 'THAP11', 'ALG13', 'RUVBL1', 'RFC4', 'CPSF4', 'WDR70', 'MRPL10', 'MRPL36', 'CENPT', 'RPL41', 'RBMXL1', 'MRPS23', 'COPS8', 'AHCTF1', 'XRCC5', 'AIFM1', 'LAMTOR1', 'PPP1R37', 'CPSF6', 'RBM10', 'SMNDC1', 'RABGGTB', 'NOM1', 'INPPL1', 'EIF2S2', 'YEATS2', 'DDX41', 'PRPF39', 'NCKAP1', 'SPTSSA', 'MBTPS2', 'ANKS6', 'CHMP7', 'ACTR8', 'PHF12', 'PSME1', 'VARS2', 'RPIA', 'MANF', 'TAF10', 'TBPL1', 'PFDN6', 'BET1', 'HS6ST1', 'INTS14', 'EHMT2', 'EIF3A', 'CENPC', 'THRAP3', 'ANAPC5', 'GEMIN5', 'RPAP2', 'GPN1', 'PPAN', 'EXOC2', 'PDCD11', 'RNF113A', 'RBBP8', 'RBM15', 'INO80B', 'NDC1', 'TRIAP1', 'UXS1', 'PSMB3', 'AP2M1', 'SMG5', 'ERCC2', 'YTHDC1', 'NOL8', 'AGBL5', 'COX5A', 'INTS6', 'UQCC2', 'ZNF236', 'CCT6A', 'UPF2', 'TAF8', 'DPH2', 'GPS2', 'NOL6', 'TIMM8A', 'POGLUT3', 'MNAT1', 'OGFOD1', 'RBM19', 'NPM1', 'CSNK2B', 'MRPL24', 'SLC2A8', 'SPG7', 'ATP6V0C', 'DIMT1', 'NAA35', 'NDUFAB1', 'RRP9', 'TERF2', 'WDR46', 'C17orf58', 'RPAP3', 'NCAPD2', 'TCERG1', 'TACC3', 'LDB1', 'PSMC5', 'MRPS26', 'RPL17', 'PDHA1', 'DCAF6', 'C9orf16', 'SPRTN', 'MYC', 'GEMIN4', 'EXOSC4', 'FDPS', 'DCTN4', 'RTEL1', 'VPS41', 'CCT5', 'PES1', 'PLEKHN1', 'SRP68', 'RAC3', 'SETD1A', 'PNKP', 'TUBE1', 'PABPN1', 'SLC7A6OS', 'NFYC', 'NARS', 'DOLK', 'CHEK1', 'SUPT16H', 'WTAP', 'SSBP3', 'PNN', 'EIF2B1', 'TEX10', 'TAF6', 'STX5', 'HSCB', 'WDR26', 'PAXBP1', 'WDR43', 'SART1', 'INTS8', 'SDC1', 'TAF5', 'EIF1', 'WDR75', 'NRBP1', 'INTS5', 'INTS10', 'SETDB1', 'CEP85', 'CDT1', 'KIN', 'BRD2', 'RBX1', 'RPL27A', 'BORA', 'QRSL1', 'CSTF1', 'NOL12', 'MRPS21', 'NDUFAF7', 'TBCA', 'THAP1', 'RRP12', 'OPA1', 'HJURP', 'BTF3', 'EXOSC5', 'IST1', 'CNN2', 'HSP90B1', 'HARS', 'FAM207A', 'PPA1', 'MRPL20', 'TTI1', 'LSM7', 'CIAO1', 'FNTA', 'SASS6', 'TFDP1', 'NELFA', 'MBNL1', 'POLR3K', 'PTPN11', 'PGAM1', 'STRAP', 'TIMM13', 'EIF3I', 'MRPL9', 'INTS12', 'PRELID1', 'PDRG1', 'MMS19', 'EIF1AD', 'MRPS35', 'PRDM4', 'NHLRC2', 'FARSA', 'BRCA2', 'THOC6', 'RRP7A', 'NUP153', 'UTP18', 'SARS2', 'CHORDC1', 'CDC42', 'MRPL27', 'NUP160', 'UTP23', 'RPS21', 'DDX20', 'CLPB', 'EDC4', 'NELFE', 'NAF1', 'COPS3', 'IPO9', 'CPSF3', 'BPTF', 'RPA1', 'EPRS', 'SRPRB', 'SNRNP48', 'NUB1', 'KRI1', 'AFG3L2', 'DBR1', 'GFM1', 'NAGLU', 'RPL7', 'PPRC1', 'DHX29', 'DERL2', 'CCP110', 'NUP85', 'NUDC', 'TUBB', 'SRP9', 'TBP', 'WDR77', 'DNAJC17', 'PRORP', 'PAM16', 'USP8', 'RPS28', 'DSTYK', 'NUP35', 'TRAPPC3', 'GINS4', 'BARD1', 'THOC3', 'PSMA3', 'GTF3C6', 'SLBP', 'MAT2A', 'PRPF19', 'SRSF1', 'EFTUD2', 'CDC16', 'HNRNPA1', 'PDCD6IP', 'TADA1', 'RARS']
# train gets all other perturbations automatically