function [jobId, taskId] = parallelDriver(varargin) % PARALLELDRIVER % % Author:: Andrea Vedaldi % AUTORIGHTS % Copyright (C) 2008-09 Andrea Vedaldi % % This file is part of the VGG MKL Class and VGG MKL Det code packages, % available in the terms of the GNU General Public License version 2. jobopts.parallelize = 0 ; jobopts.jobId = NaN ; jobopts.taskId = NaN ; jobopts.jobDir = '' ; jobopts.needsJava = false ; jobopts.waitJobs = [] ; jobopts.numNodes = 10 ; jobopts.freeMemMb = 1900 ; jobopts = vl_argparse(jobopts, varargin{:}) ; % waiting list job_qsub_opts = [] ; if ~isempty(jobopts.waitJobs) jobList = sprintf('%d,', jobopts.waitJobs) ; job_qsub_opts = [job_qsub_opts ... ' -hold_jid ' jobList(1:end-1)] ; end if jobopts.freeMemMb > 0 job_qsub_opts = [job_qsub_opts ... sprintf(' -l mem_free=%gm', jobopts.freeMemMb) ... sprintf(' -l vf=%gm', jobopts.freeMemMb)] ; end % get who is calling me drop = dbstack ; callingMFile = drop(2).name ; clear drop ; taskId = jobopts.taskId ; jobId = jobopts.jobId ; % -------------------------------------------------------------------- % If not parallel % -------------------------------------------------------------------- if ~ jobopts.parallelize fprintf('>>>>> %s <<<<<\n', callingMFile) ; return ; end % -------------------------------------------------------------------- % If parallel, and taskId is specified % -------------------------------------------------------------------- if ~isnan(jobopts.taskId) return ; end % -------------------------------------------------------------------- % If parallel, and taskId is not specified % -------------------------------------------------------------------- tic ; outputDir = fullfile(jobopts.jobDir, sprintf('j$JOB_ID-%s', callingMFile)) ; stdErrPath = fullfile(outputDir, 'err$TASK_ID.txt') ; stdOutPath = fullfile(outputDir, 'out$TASK_ID.txt') ; %stdErrPath = fullfile(jobopts.jobDir, 'err$JOB_ID-$TASK_ID.txt') ; %stdOutPath = fullfile(jobopts.jobDir, 'out$JOB_ID-$TASK_ID.txt') ; matCmd = sprintf(['jobName=sprintf(''j%%d-%s'',sgeJobId);' ... 'jobPath=fullfile(''%s'', jobName);' ... 'load(fullfile(jobPath,''conf''));' ... 'disp(conf);' ... '%s(conf,''parallelize'',1,''jobId'',sgeJobId,' ... ' ''taskId'',sgeTaskId,''jobDir'',''%s'');'], ... callingMFile, ... jobopts.jobDir, ... callingMFile, ... jobopts.jobDir) ; if jobopts.needsJava scriptName = 'qsub_matlab_java.sh' ; else scriptName = 'qsub_matlab.sh' ; end cmd = sprintf(['qsub ' ... '-h ' ... '-t 1-%d ' ... '-o ''%s'' ' ... '-e ''%s'' ' ... '-N ''%s'' ' ... ' %s ' ... '%s "%s"'], ... jobopts.numNodes, ... stdOutPath, stdErrPath, ... callingMFile, ... job_qsub_opts, ... scriptName, ... matCmd) ; [s,w] = system(cmd) ; if s ~= 0 fprintf('Offending command:\n%s\n\n', cmd) ; error(w) ; end tmp = regexp(w, ' ([0-9]*)\.', 'tokens') ; jobId = sscanf(tmp{1}{1}, '%d') ; taskId = NaN ; % now can setup actual output directory jobName = sprintf('j%d-%s', jobId, callingMFile) ; outputDir = fullfile(jobopts.jobDir, jobName) ; ensuredir(outputDir) ; %ensuredir(fullfile(outputDir, 'locks')) ; confPath = fullfile(outputDir, 'conf.mat') ; evalin('caller', sprintf('ssave(''%s'', ''conf'')', confPath)) ; fid = fopen(fullfile(outputDir, 'SGE_SUB_TIME'),'w') ; fwrite(fid, datestr(now)) ; fclose(fid) ; fid = fopen(fullfile(outputDir, 'SGE_CMD'),'w') ; fwrite(fid, cmd) ; fclose(fid) ; fid = fopen(fullfile(outputDir, 'SGE_ID'),'w') ; fwrite(fid, tmp{1}{1}) ; fclose(fid) ; fprintf('Spawning job array ''%s'' with %d instances.\n', ... outputDir, jobopts.numNodes) ; fprintf('\tSGE job id: %d\n', jobId) ; fprintf('\tqsub additional options: ''%s''.\n', job_qsub_opts) ; % remove hold cmd = sprintf('qalter -h U %d', jobId) ; [s,w] = system(cmd) ; if s ~= 0 fprintf('Offending command:\n%s\n\n', cmd) ; error(w) ; end % this will ensure that each job directory has a different time stamp %pause(max(1.5 - toc, 0)) ;