Commit ·
91f0016
1
Parent(s): a180ca0
upload hub_repos/ggponc2/README.md to hub from bigbio repo
Browse files
README.md
ADDED
|
@@ -0,0 +1,63 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
language:
|
| 3 |
+
- de
|
| 4 |
+
bigbio_language:
|
| 5 |
+
- German
|
| 6 |
+
multilinguality: monolingual
|
| 7 |
+
pretty_name: GGPONC2
|
| 8 |
+
homepage: https://www.leitlinienprogramm-onkologie.de/projekte/ggponc-english/
|
| 9 |
+
bigbio_pubmed: false
|
| 10 |
+
bigbio_public: flase
|
| 11 |
+
bigbio_tasks:
|
| 12 |
+
- NAMED_ENTITY_RECOGNITION
|
| 13 |
+
---
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
# Dataset Card for GGPONC2
|
| 17 |
+
|
| 18 |
+
## Dataset Description
|
| 19 |
+
|
| 20 |
+
- **Homepage:** https://www.leitlinienprogramm-onkologie.de/projekte/ggponc-english/
|
| 21 |
+
- **Pubmed:** False
|
| 22 |
+
- **Public:** False
|
| 23 |
+
- **Tasks:** NER
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
The GGPONC project aims to provide a freely distributable corpus of German medical text for NLP researchers.
|
| 27 |
+
Clinical guidelines are particularly suitable to create such corpora, as they contain no protected health information
|
| 28 |
+
(PHI), which distinguishes them from other kinds of medical text.
|
| 29 |
+
|
| 30 |
+
The second version of the corpus (GGPONC 2.0) consists of 30 German oncology guidelines with 1.87 million tokens.
|
| 31 |
+
It has been completely manually annotated on the entity level by 7 medical students using the INCEpTION platform over a
|
| 32 |
+
time frame of 6 months in more than 1200 hours of work. This makes GGPONC 2.0 the largest annotated, freely
|
| 33 |
+
distributable corpus of German medical text at the moment.
|
| 34 |
+
|
| 35 |
+
Annotated entities are Findings (Diagnosis / Pathology, Other Finding), Substances (Clinical Drug, Nutrients / Body
|
| 36 |
+
Substances, External Substances) and Procedures (Therapeutic, Diagnostic), as well as Specifications for these entities.
|
| 37 |
+
In total, annotators have created more than 200000 entity annotations. In addition, fragment relationships have been
|
| 38 |
+
annotated to explicitly indicate elliptical coordinated noun phrases, a common phenomenon in German text.
|
| 39 |
+
|
| 40 |
+
## Citation Information
|
| 41 |
+
|
| 42 |
+
```
|
| 43 |
+
@inproceedings{borchert-etal-2022-ggponc,
|
| 44 |
+
title = "{GGPONC} 2.0 - The {G}erman Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline {NER} Taggers",
|
| 45 |
+
author = "Borchert, Florian and
|
| 46 |
+
Lohr, Christina and
|
| 47 |
+
Modersohn, Luise and
|
| 48 |
+
Witt, Jonas and
|
| 49 |
+
Langer, Thomas and
|
| 50 |
+
Follmann, Markus and
|
| 51 |
+
Gietzelt, Matthias and
|
| 52 |
+
Arnrich, Bert and
|
| 53 |
+
Hahn, Udo and
|
| 54 |
+
Schapranow, Matthieu-P.",
|
| 55 |
+
booktitle = "Proceedings of the Thirteenth Language Resources and Evaluation Conference",
|
| 56 |
+
month = jun,
|
| 57 |
+
year = "2022",
|
| 58 |
+
address = "Marseille, France",
|
| 59 |
+
publisher = "European Language Resources Association",
|
| 60 |
+
url = "https://aclanthology.org/2022.lrec-1.389",
|
| 61 |
+
pages = "3650--3660",
|
| 62 |
+
}
|
| 63 |
+
```
|