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upload hub_repos/hprd50/README.md to hub from bigbio repo
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README.md
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---
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language:
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- en
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license: unknown
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license_bigbio_shortname: UNKNOWN
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pretty_name: HPRD50
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---
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# Dataset Card for HPRD50
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## Dataset Description
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- **Homepage:**
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- **Pubmed:** True
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- **Public:** True
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- **Tasks:** Relation Extraction, Named Entity Recognition
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HPRD50 is a dataset of randomly selected, hand-annotated abstracts of biomedical papers
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referenced by the Human Protein Reference Database (HPRD). It is parsed in XML format,
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splitting each abstract into sentences, and in each sentence there may be entities and
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interactions between those entities. In this particular dataset, entities are all
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proteins and interactions are thus protein-protein interactions.
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Moreover, all entities are normalized to the HPRD database. These normalized terms are
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stored in each entity's 'type' attribute in the source XML. This means the dataset can
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determine e.g. that "Janus kinase 2" and "Jak2" are referencing the same normalized
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entity.
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Because the dataset contains entities and relations, it is suitable for Named Entity
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Recognition and Relation Extraction.
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## Citation Information
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```
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@article{fundel2007relex,
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title={RelEx—Relation extraction using dependency parse trees},
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author={Fundel, Katrin and K{"u}ffner, Robert and Zimmer, Ralf},
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journal={Bioinformatics},
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volume={23},
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number={3},
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pages={365--371},
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year={2007},
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publisher={Oxford University Press}
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}
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```
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