Commit ·
355b1dc
1
Parent(s): 3746f68
upload hub_repos/n2c2_2008/README.md to hub from bigbio repo
Browse files
README.md
ADDED
|
@@ -0,0 +1,58 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
---
|
| 3 |
+
language:
|
| 4 |
+
- en
|
| 5 |
+
license: other
|
| 6 |
+
license_bigbio_shortname: DUA
|
| 7 |
+
pretty_name: n2c2 2008 Obesity
|
| 8 |
+
---
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
# Dataset Card for n2c2 2008 Obesity
|
| 12 |
+
|
| 13 |
+
## Dataset Description
|
| 14 |
+
|
| 15 |
+
- **Homepage:** https://portal.dbmi.hms.harvard.edu/projects/n2c2-nlp/
|
| 16 |
+
- **Pubmed:** True
|
| 17 |
+
- **Public:** False
|
| 18 |
+
- **Tasks:** Text Classification
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
The data for the n2c2 2008 obesity challenge consisted of discharge summaries from
|
| 22 |
+
the Partners HealthCare Research Patient Data Repository. These data were chosen
|
| 23 |
+
from the discharge summaries of patients who were overweight or diabetic and had
|
| 24 |
+
been hospitalized for obesity or diabetes sometime since 12/1/04. De-identification
|
| 25 |
+
was performed semi-automatically. All private health information was replaced with
|
| 26 |
+
synthetic identifiers.
|
| 27 |
+
|
| 28 |
+
The data for the challenge were annotated by two obesity experts from the
|
| 29 |
+
Massachusetts General Hospital Weight Center. The experts were given a textual task,
|
| 30 |
+
which asked them to classify each disease (see list of diseases above) as Present,
|
| 31 |
+
Absent, Questionable, or Unmentioned based on explicitly documented information in
|
| 32 |
+
the discharge summaries, e.g., the statement “the patient is obese”. The experts were
|
| 33 |
+
also given an intuitive task, which asked them to classify each disease as Present,
|
| 34 |
+
Absent, or Questionable by applying their intuition and judgment to information in
|
| 35 |
+
the discharge summaries.
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
|
| 39 |
+
## Citation Information
|
| 40 |
+
|
| 41 |
+
```
|
| 42 |
+
@article{uzuner2009recognizing,
|
| 43 |
+
author = {
|
| 44 |
+
Uzuner, Ozlem
|
| 45 |
+
},
|
| 46 |
+
title = {Recognizing Obesity and Comorbidities in Sparse Data},
|
| 47 |
+
journal = {Journal of the American Medical Informatics Association},
|
| 48 |
+
volume = {16},
|
| 49 |
+
number = {4},
|
| 50 |
+
pages = {561-570},
|
| 51 |
+
year = {2009},
|
| 52 |
+
month = {07},
|
| 53 |
+
url = {https://doi.org/10.1197/jamia.M3115},
|
| 54 |
+
doi = {10.1197/jamia.M3115},
|
| 55 |
+
eprint = {https://academic.oup.com/jamia/article-pdf/16/4/561/2302602/16-4-561.pdf}
|
| 56 |
+
}
|
| 57 |
+
|
| 58 |
+
```
|