diff --git a/.gitattributes b/.gitattributes
index 1ef325f1b111266a6b26e0196871bd78baa8c2f3..b5677ee5277412e332e7af6c17cf765d8d46275d 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -57,3 +57,28 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+annotations_filtered.zarr/obsm/X_projections/1.0 filter=lfs diff=lfs merge=lfs -text
+annotations_filtered.zarr/obsm/X_projections/1.1 filter=lfs diff=lfs merge=lfs -text
+annotations_filtered.zarr/obsm/X_pca/1.0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000001/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000000/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000001/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000000/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000001/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/1/000000/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002000/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002001/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001001/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002001/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001000/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001001/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001000/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002000/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/000001/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002001/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/000001/0/c/0/1/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001001/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/001000/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/002000/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/000001/0/c/0/0/0/0/0 filter=lfs diff=lfs merge=lfs -text
+dataset.zarr/A/2/000000/0/c/0/2/0/0/0 filter=lfs diff=lfs merge=lfs -text
diff --git a/annotations_filtered.zarr/X/.zarray b/annotations_filtered.zarr/X/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..f53e4835cf893f4625057e27c3c4486af053ea87
--- /dev/null
+++ b/annotations_filtered.zarr/X/.zarray
@@ -0,0 +1,23 @@
+{
+  "shape": [
+    8276,
+    768
+  ],
+  "chunks": [
+    1035,
+    192
+  ],
+  "dtype": "<f4",
+  "fill_value": 0.0,
+  "order": "C",
+  "filters": null,
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/X/.zattrs b/annotations_filtered.zarr/X/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/X/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/layers/.zattrs b/annotations_filtered.zarr/layers/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..863da228ef1f8edac307a59e96ae290bb8c4d2cf
--- /dev/null
+++ b/annotations_filtered.zarr/layers/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "dict",
+  "encoding-version": "0.1.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/layers/.zgroup b/annotations_filtered.zarr/layers/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/layers/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/.zattrs b/annotations_filtered.zarr/obs/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..1ba4d7bca12cc80547c1330f67b47d20e8a0494c
--- /dev/null
+++ b/annotations_filtered.zarr/obs/.zattrs
@@ -0,0 +1,16 @@
+{
+  "column-order": [
+    "id",
+    "fov_name",
+    "track_id",
+    "parent_track_id",
+    "parent_id",
+    "t",
+    "y",
+    "x",
+    "infection_status"
+  ],
+  "_index": "_index",
+  "encoding-type": "dataframe",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/.zgroup b/annotations_filtered.zarr/obs/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/obs/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/_index/.zarray b/annotations_filtered.zarr/obs/_index/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..3f43fe915eb276e0905a20f5b89fc8df8f0d9e09
--- /dev/null
+++ b/annotations_filtered.zarr/obs/_index/.zarray
@@ -0,0 +1,25 @@
+{
+  "shape": [
+    8276
+  ],
+  "chunks": [
+    8276
+  ],
+  "dtype": "|O",
+  "fill_value": "",
+  "order": "C",
+  "filters": [
+    {
+      "id": "vlen-utf8"
+    }
+  ],
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/_index/.zattrs b/annotations_filtered.zarr/obs/_index/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..2245ffba1f3c74812a55cb1e8f31e41d0c783dec
--- /dev/null
+++ b/annotations_filtered.zarr/obs/_index/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "string-array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/_index/0 b/annotations_filtered.zarr/obs/_index/0
new file mode 100644
index 0000000000000000000000000000000000000000..125534674e6043a30c40dd84a40f2c6558ccc9c7
Binary files /dev/null and b/annotations_filtered.zarr/obs/_index/0 differ
diff --git a/annotations_filtered.zarr/obs/fov_name/codes/.zattrs b/annotations_filtered.zarr/obs/fov_name/codes/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/obs/fov_name/codes/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/infection_status/categories/.zarray b/annotations_filtered.zarr/obs/infection_status/categories/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..9b193ea2cad7bc805688c24640eb8cda40f8ae6b
--- /dev/null
+++ b/annotations_filtered.zarr/obs/infection_status/categories/.zarray
@@ -0,0 +1,25 @@
+{
+  "shape": [
+    3
+  ],
+  "chunks": [
+    3
+  ],
+  "dtype": "|O",
+  "fill_value": "",
+  "order": "C",
+  "filters": [
+    {
+      "id": "vlen-utf8"
+    }
+  ],
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/infection_status/categories/.zattrs b/annotations_filtered.zarr/obs/infection_status/categories/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..2245ffba1f3c74812a55cb1e8f31e41d0c783dec
--- /dev/null
+++ b/annotations_filtered.zarr/obs/infection_status/categories/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "string-array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/infection_status/categories/0 b/annotations_filtered.zarr/obs/infection_status/categories/0
new file mode 100644
index 0000000000000000000000000000000000000000..46f7536957710371f4b4cdd930d611a68db9070d
Binary files /dev/null and b/annotations_filtered.zarr/obs/infection_status/categories/0 differ
diff --git a/annotations_filtered.zarr/obs/infection_status/codes/.zarray b/annotations_filtered.zarr/obs/infection_status/codes/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..e7300f28ad7e475caeaaf9af3e96b5447f6a281b
--- /dev/null
+++ b/annotations_filtered.zarr/obs/infection_status/codes/.zarray
@@ -0,0 +1,21 @@
+{
+  "shape": [
+    8276
+  ],
+  "chunks": [
+    8276
+  ],
+  "dtype": "|i1",
+  "fill_value": 0,
+  "order": "C",
+  "filters": null,
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/infection_status/codes/.zattrs b/annotations_filtered.zarr/obs/infection_status/codes/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/obs/infection_status/codes/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/track_id/0 b/annotations_filtered.zarr/obs/track_id/0
new file mode 100644
index 0000000000000000000000000000000000000000..4ae2ee823318baa7e7e9036c0c3f67d4d1f642f6
Binary files /dev/null and b/annotations_filtered.zarr/obs/track_id/0 differ
diff --git a/annotations_filtered.zarr/obs/y/.zattrs b/annotations_filtered.zarr/obs/y/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/obs/y/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obs/y/0 b/annotations_filtered.zarr/obs/y/0
new file mode 100644
index 0000000000000000000000000000000000000000..5efd502764c8d7e8a06279552500980fce8d4dda
Binary files /dev/null and b/annotations_filtered.zarr/obs/y/0 differ
diff --git a/annotations_filtered.zarr/obsm/.zattrs b/annotations_filtered.zarr/obsm/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..863da228ef1f8edac307a59e96ae290bb8c4d2cf
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "dict",
+  "encoding-version": "0.1.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/.zgroup b/annotations_filtered.zarr/obsm/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/X_pca/.zarray b/annotations_filtered.zarr/obsm/X_pca/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..ae7a0ea1fe17dc655c963d74ffc9251d25faa436
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_pca/.zarray
@@ -0,0 +1,23 @@
+{
+  "shape": [
+    8276,
+    8
+  ],
+  "chunks": [
+    4138,
+    8
+  ],
+  "dtype": "<f4",
+  "fill_value": 0.0,
+  "order": "C",
+  "filters": null,
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/X_pca/.zattrs b/annotations_filtered.zarr/obsm/X_pca/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_pca/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/X_pca/1.0 b/annotations_filtered.zarr/obsm/X_pca/1.0
new file mode 100644
index 0000000000000000000000000000000000000000..2141034bb4be013b7d8ed3f05f18b0f37f0fb439
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_pca/1.0
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bb4d0937ab78c83c394e2eba7a88b96d567cec6188a21f760bc2693bf8521a45
+size 123325
diff --git a/annotations_filtered.zarr/obsm/X_projections/.zarray b/annotations_filtered.zarr/obsm/X_projections/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..917eedfd9db7e1fdf1ce2b0a1f7f8de3fbd28213
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_projections/.zarray
@@ -0,0 +1,23 @@
+{
+  "shape": [
+    8276,
+    32
+  ],
+  "chunks": [
+    4138,
+    16
+  ],
+  "dtype": "<f4",
+  "fill_value": 0.0,
+  "order": "C",
+  "filters": null,
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/X_projections/.zattrs b/annotations_filtered.zarr/obsm/X_projections/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..87fbce928f6e48fbd57c837574247dcb0220376c
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_projections/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "array",
+  "encoding-version": "0.2.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsm/X_projections/1.0 b/annotations_filtered.zarr/obsm/X_projections/1.0
new file mode 100644
index 0000000000000000000000000000000000000000..68909d4155628229e39fbad4e9aa0e425fc80e6f
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_projections/1.0
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:727de988308548d02648c26efdea96195db8d770b83548f1d7279b92f0b2fd39
+size 235370
diff --git a/annotations_filtered.zarr/obsm/X_projections/1.1 b/annotations_filtered.zarr/obsm/X_projections/1.1
new file mode 100644
index 0000000000000000000000000000000000000000..93e12df8f260c3a26f37238da66312ae4b3b361c
--- /dev/null
+++ b/annotations_filtered.zarr/obsm/X_projections/1.1
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60acba5bf149100d5b4fecdec2556835fd17c3f5e4efd17e518fa393b7cdeabf
+size 238257
diff --git a/annotations_filtered.zarr/obsp/.zattrs b/annotations_filtered.zarr/obsp/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..863da228ef1f8edac307a59e96ae290bb8c4d2cf
--- /dev/null
+++ b/annotations_filtered.zarr/obsp/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "dict",
+  "encoding-version": "0.1.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/obsp/.zgroup b/annotations_filtered.zarr/obsp/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/obsp/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/raw/.zarray b/annotations_filtered.zarr/raw/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..dab4ffaeb02dba828d6479312035e264f8053e93
--- /dev/null
+++ b/annotations_filtered.zarr/raw/.zarray
@@ -0,0 +1,17 @@
+{
+  "shape": [],
+  "chunks": [],
+  "dtype": "|b1",
+  "fill_value": false,
+  "order": "C",
+  "filters": null,
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
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diff --git a/annotations_filtered.zarr/raw/.zattrs b/annotations_filtered.zarr/raw/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..e729321ab4c4387acd112421dcd7a3c466dca531
--- /dev/null
+++ b/annotations_filtered.zarr/raw/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "null",
+  "encoding-version": "0.1.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/uns/.zattrs b/annotations_filtered.zarr/uns/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..863da228ef1f8edac307a59e96ae290bb8c4d2cf
--- /dev/null
+++ b/annotations_filtered.zarr/uns/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "dict",
+  "encoding-version": "0.1.0"
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/uns/.zgroup b/annotations_filtered.zarr/uns/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/uns/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/var/.zattrs b/annotations_filtered.zarr/var/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..8e19bf703e66c045ecb6e82d35229a5c2cff1670
--- /dev/null
+++ b/annotations_filtered.zarr/var/.zattrs
@@ -0,0 +1,6 @@
+{
+  "column-order": [],
+  "_index": "_index",
+  "encoding-type": "dataframe",
+  "encoding-version": "0.2.0"
+}
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diff --git a/annotations_filtered.zarr/var/.zgroup b/annotations_filtered.zarr/var/.zgroup
new file mode 100644
index 0000000000000000000000000000000000000000..cab13da6ee9f76aa1d91f6d4ba15fb726913efa8
--- /dev/null
+++ b/annotations_filtered.zarr/var/.zgroup
@@ -0,0 +1,3 @@
+{
+  "zarr_format": 2
+}
\ No newline at end of file
diff --git a/annotations_filtered.zarr/var/_index/.zarray b/annotations_filtered.zarr/var/_index/.zarray
new file mode 100644
index 0000000000000000000000000000000000000000..450e49f4d65873efa2123ac98c4347b5aadad988
--- /dev/null
+++ b/annotations_filtered.zarr/var/_index/.zarray
@@ -0,0 +1,25 @@
+{
+  "shape": [
+    768
+  ],
+  "chunks": [
+    768
+  ],
+  "dtype": "|O",
+  "fill_value": "",
+  "order": "C",
+  "filters": [
+    {
+      "id": "vlen-utf8"
+    }
+  ],
+  "dimension_separator": ".",
+  "compressor": {
+    "id": "blosc",
+    "cname": "lz4",
+    "clevel": 5,
+    "shuffle": 1,
+    "blocksize": 0
+  },
+  "zarr_format": 2
+}
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diff --git a/annotations_filtered.zarr/var/_index/.zattrs b/annotations_filtered.zarr/var/_index/.zattrs
new file mode 100644
index 0000000000000000000000000000000000000000..2245ffba1f3c74812a55cb1e8f31e41d0c783dec
--- /dev/null
+++ b/annotations_filtered.zarr/var/_index/.zattrs
@@ -0,0 +1,4 @@
+{
+  "encoding-type": "string-array",
+  "encoding-version": "0.2.0"
+}
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diff --git a/annotations_filtered.zarr/var/_index/0 b/annotations_filtered.zarr/var/_index/0
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