uermel commited on
Commit ·
4b25fcc
1
Parent(s): 0c0bf54
remove release status.
Browse files
README.md
CHANGED
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@@ -55,12 +55,12 @@ deposition; this repository contributes the **unified manifest layer**
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(splits, canonical class names, ground-truth filtering, evaluation
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protocol) so models can be trained and compared under one roof.
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| Sub-benchmark | Task | Organism / sample
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|---------------|---------------|--------------------------
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| **Phantom** | Localization | Lysate / synthetic
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| **Yeast** | Segmentation | *S. pombe*
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| **Bacterial** | Segmentation | Prokaryote (8 genera)
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| **MotorBench**| Localization | *V. cholerae* (test) + multi-genus prokaryotes (train) |
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- **Curated by:** Authors of the POPSICLE benchmark paper (NeurIPS 2026, under review).
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- **Shared by:** Biohub Dynamic Structural Biology / CryoET Data Portal community.
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@@ -128,9 +128,9 @@ popsicle/
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meshes.csv
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segmentations.csv
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objects.csv # name, url
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bacterial/ #
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yeast/ #
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motorbench/ #
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```
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`copick:baseUrl` is set to `s3://cryoet-data-portal-public/` so the CSV
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(splits, canonical class names, ground-truth filtering, evaluation
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protocol) so models can be trained and compared under one roof.
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+
| Sub-benchmark | Task | Organism / sample | # train | # test |
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|---------------|---------------|--------------------------------------------------------|--------:|-------:|
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| **Phantom** | Localization | Lysate / synthetic | 7 | 485 |
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| **Yeast** | Segmentation | *S. pombe* | 16 | 4 |
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| **Bacterial** | Segmentation | Prokaryote (8 genera) | 68 | 12 |
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| **MotorBench**| Localization | *V. cholerae* (test) + multi-genus prokaryotes (train) | 1,559 | 843 |
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- **Curated by:** Authors of the POPSICLE benchmark paper (NeurIPS 2026, under review).
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- **Shared by:** Biohub Dynamic Structural Biology / CryoET Data Portal community.
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meshes.csv
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segmentations.csv
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objects.csv # name, url
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bacterial/ # segmentation across 8 bacterial genera
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yeast/ # segmentation in *S. pombe*
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motorbench/ # flagellar-motor localization
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```
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`copick:baseUrl` is set to `s3://cryoet-data-portal-public/` so the CSV
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