uermel commited on
Commit ·
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Parent(s): e28c39d
replace inaccurate name.
Browse files- README.md +3 -3
- demos.ipynb +1 -8
README.md
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@@ -310,7 +310,7 @@ sourced from the POPSICLE Yeast Segmentation Dataset deposition
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| `nucleus` | `nucleus` |
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| `nuclear-envelope` | `nuclear envelope` |
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| `vesicle` | `vesicle` |
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| `
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| `mitochondrion` | `mitochondrion` |
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#### Splits
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Class distribution is uneven — large structures like `cytoplasm` are
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present in nearly every run, while small organelles (`vesicle`,
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`
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in only a subset:
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| Class | Total runs |
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|---------------------|-----------:|
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| `cytoplasm` | 19 |
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| `vesicle` | 18 |
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| `mitochondrion` | 9 |
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| `nuclear-envelope` | 8 |
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| `nucleus` | `nucleus` |
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| `nuclear-envelope` | `nuclear envelope` |
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| `vesicle` | `vesicle` |
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| `membrane-tubule` | `membrane-enclosed lumen` |
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| `mitochondrion` | `mitochondrion` |
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#### Splits
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Class distribution is uneven — large structures like `cytoplasm` are
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present in nearly every run, while small organelles (`vesicle`,
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`membrane-tubule`) are sparse and `mitochondrion` / `nucleus` are present
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in only a subset:
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| Class | Total runs |
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|---------------------|-----------:|
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| `cytoplasm` | 19 |
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| `membrane-tubule` | 18 |
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| `vesicle` | 18 |
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| `mitochondrion` | 9 |
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| `nuclear-envelope` | 8 |
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demos.ipynb
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@@ -193,14 +193,7 @@
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{
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"cell_type": "markdown",
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"metadata": {},
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"source":
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"## Yeast — multi-class organelle segmentation\n",
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"\n",
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"Six organelle classes (cytoplasm, nucleus, nuclear-envelope,\n",
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"vesicle, endomembrane, mitochondrion) on 20 *S. pombe* tomograms\n",
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"split 16/4 train/test. Low-data, class-imbalanced eukaryotic\n",
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"counterpart to the bacterial benchmark.\n"
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],
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"id": "aaf332964b36fdb3"
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},
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{
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": "## Yeast — multi-class organelle segmentation\n\nSix organelle classes (cytoplasm, nucleus, nuclear-envelope,\nvesicle, membrane-tubule, mitochondrion) on 20 *S. pombe* tomograms\nsplit 16/4 train/test. Low-data, class-imbalanced eukaryotic\ncounterpart to the bacterial benchmark.",
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"id": "aaf332964b36fdb3"
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},
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{
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