rename human archive

oas-paired-sequence-data.py

@@ -25,11 +25,7 @@ _HOMEPAGE = "https://opig.stats.ox.ac.uk/webapps/oas/"
 _LICENSE = "cc-by-4.0"
 _BASE_URL = "https://aws-hcls-ml.s3.amazonaws.com/oas-paired-sequence-data/processed/"
 _URLS = {
-    # "human": _BASE_URL + "human.zip",    
-    # "rat_SD": _BASE_URL + "rat_SD.zip",
-    # "mouse_BALB_c": _BASE_URL + "mouse_BALB_c.zip",
-    # "mouse_C57BL_6": _BASE_URL + "mouse_C57BL_6.zip",
-    "human": _BASE_URL + "test.tar.gz",
+    "human": _BASE_URL + "human.tar.gz",
     "rat_SD": _BASE_URL + "rat_SD.tar.gz",
     "mouse_BALB_c": _BASE_URL + "mouse_BALB_c.tar.gz",
     "mouse_C57BL_6": _BASE_URL + "mouse_C57BL_6.tar.gz",    

src/oas-data-cleaning.py

@@ -11,14 +11,13 @@ data_dir = os.getcwd()
 output_path = os.getcwd()
 
 # species_list = ["rat_SD", "mouse_BALB_c", "mouse_C57BL_6", "human"]
-species_list = ["rat_SD"]
+species_list = ["human"]
 
 S3_BUCKET = "aws-hcls-ml"
 S3_SRC_PREFIX = "oas-paired-sequence-data/raw"
 S3_DEST_PREFIX = "oas-paired-sequence-data/processed"
 s3 = boto3.client("s3")
 
-
 # def calc_cdr_coordinates(row):
 #     for i in range(1, 4):
 #         for j in ["heavy", "light"]: