{
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  {
   "cell_type": "markdown",
   "id": "8ce6b74e-54af-48ba-abf2-7ce2caa573bf",
   "metadata": {},
   "source": [
    "# Xenium Viz"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "56843452-1a1c-4ae7-95ad-0a7bd909bc90",
   "metadata": {},
   "outputs": [],
   "source": [
    "%load_ext autoreload\n",
    "%autoreload 2\n",
    "%env ANYWIDGET_HMR=1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "cec165b0-bd8f-40d5-b130-22486970aca8",
   "metadata": {},
   "outputs": [],
   "source": [
    "import celldega as dega"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b66e327c-8c1e-41b7-9fbc-48d3f5c06fe3",
   "metadata": {},
   "outputs": [],
   "source": [
    "sample = \"WTA_Preview_FFPE_Cervical_Cancer_outs\"\n",
    "path_dega_files = f\"../data/processed_data/DegaFiles/{sample}\"\n",
    "\n",
    "landscape_ist = dega.viz.Landscape(\n",
    "    technology=\"Xenium\",\n",
    "    base_url=f\"http://localhost:{dega.viz.get_local_server()}/{path_dega_files}\",\n",
    ")\n",
    "\n",
    "landscape_ist"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c8cd7207-7604-49bb-9172-d92af31ad74b",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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   "version": "3.12.1"
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   "number_sections": true,
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   "skip_h1_title": false,
   "title_cell": "Table of Contents",
   "title_sidebar": "Contents",
   "toc_cell": false,
   "toc_position": {},
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  "widgets": {
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    "state": {},
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