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README.md
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# LEDGER data
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Processed data
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will accept. Code lives at [bryanc5864/LEDGER](https://github.com/bryanc5864/LEDGER).
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The core problem: when an element is missing from a genome, the host either never met it or met it
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and rejected it. Regressing observed presence on host features estimates the product of those two
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metadata/ NCBI assembly metadata and the stratified cohort definition
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results/ exclusion-restriction audit, CRISPR proximity test, real-data fit output
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figures/ every figure in the paper, PNG and PDF
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docs/ plans, results, training log, review reports, bibliography verification
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main.pdf the paper
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```
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# LEDGER data
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Processed data for LEDGER, a latent-variable model that separates *exposure* from *establishment*
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when estimating which mobile genetic elements a bacterial genome will accept. Code lives at [bryanc5864/LEDGER](https://github.com/bryanc5864/LEDGER).
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The core problem: when an element is missing from a genome, the host either never met it or met it
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and rejected it. Regressing observed presence on host features estimates the product of those two
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metadata/ NCBI assembly metadata and the stratified cohort definition
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results/ exclusion-restriction audit, CRISPR proximity test, real-data fit output
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figures/ every figure in the paper, PNG and PDF
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main.pdf the paper
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```
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