updated README.md
Browse files
README.md
CHANGED
|
@@ -52,17 +52,58 @@ There are 447 images and corresponding segmentation masks for 218 unique patient
|
|
| 52 |
|
| 53 |
### Data Fields
|
| 54 |
|
|
|
|
|
|
|
| 55 |
- Numeric representation of image
|
| 56 |
-
|
|
|
|
| 57 |
- vertebrae
|
| 58 |
- intervertebral discs
|
| 59 |
- spinal canal
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 60 |
- Patient characteristics
|
| 61 |
- biological sex
|
| 62 |
- age
|
|
|
|
| 63 |
- Scanner characteristics
|
| 64 |
- manufacturer
|
| 65 |
-
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 66 |
### Data Splits
|
| 67 |
|
| 68 |
The training set contains [x] images distributed as follows:
|
|
@@ -104,7 +145,7 @@ The data have been curated to enable users to load any of the following:
|
|
| 104 |
|
| 105 |
### Processing Steps
|
| 106 |
|
| 107 |
-
Specifics to be determined, but will include:
|
| 108 |
|
| 109 |
1. Conversion of .mha files to numeric representations
|
| 110 |
2. Linking of segmentation mask numeric representations to image files
|
|
|
|
| 52 |
|
| 53 |
### Data Fields
|
| 54 |
|
| 55 |
+
The following list includes the data fields available for importing:
|
| 56 |
+
|
| 57 |
- Numeric representation of image
|
| 58 |
+
|
| 59 |
+
- Numeric representation of segmentation mask
|
| 60 |
- vertebrae
|
| 61 |
- intervertebral discs
|
| 62 |
- spinal canal
|
| 63 |
+
|
| 64 |
+
- Image characteristics
|
| 65 |
+
- number of vertebrae
|
| 66 |
+
- number of discs
|
| 67 |
+
|
| 68 |
- Patient characteristics
|
| 69 |
- biological sex
|
| 70 |
- age
|
| 71 |
+
|
| 72 |
- Scanner characteristics
|
| 73 |
- manufacturer
|
| 74 |
+
- manufacturer model name
|
| 75 |
+
- serial number
|
| 76 |
+
- software version
|
| 77 |
+
- echo numbers
|
| 78 |
+
- echo time
|
| 79 |
+
- echo train length
|
| 80 |
+
- flip angle
|
| 81 |
+
- imaged nucleus
|
| 82 |
+
- imaging frequency
|
| 83 |
+
- inplane phase encoding direction
|
| 84 |
+
- MR acquisition type
|
| 85 |
+
- magnetic field strength
|
| 86 |
+
- number of phase encoding steps
|
| 87 |
+
- percent phase field of view
|
| 88 |
+
- percent sampling
|
| 89 |
+
- photometric interpretation
|
| 90 |
+
- pixel bandwidth
|
| 91 |
+
- pixel spacing
|
| 92 |
+
- repetition time
|
| 93 |
+
- specific absorption rate (SAR)
|
| 94 |
+
- samples per pixel
|
| 95 |
+
- scanning sequence
|
| 96 |
+
- sequence name
|
| 97 |
+
- series description
|
| 98 |
+
- slice thickness
|
| 99 |
+
- spacing between slices
|
| 100 |
+
- specific character set
|
| 101 |
+
- transmit coil name
|
| 102 |
+
- window center
|
| 103 |
+
- window width
|
| 104 |
+
|
| 105 |
+
(TODO: Will add variable descriptions after proposal approval)
|
| 106 |
+
|
| 107 |
### Data Splits
|
| 108 |
|
| 109 |
The training set contains [x] images distributed as follows:
|
|
|
|
| 145 |
|
| 146 |
### Processing Steps
|
| 147 |
|
| 148 |
+
(Specifics to be determined, but will include:)
|
| 149 |
|
| 150 |
1. Conversion of .mha files to numeric representations
|
| 151 |
2. Linking of segmentation mask numeric representations to image files
|