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+ ---
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+ # For reference on dataset card metadata, see the spec: https://github.com/huggingface/hub-docs/blob/main/datasetcard.md?plain=1
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+ # Doc / guide: https://huggingface.co/docs/hub/datasets-cards
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+ {}
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+ ---
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+
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+ # Dataset Card for ClinVar Exomic Downstream Dataset
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+ The ClinVar dataset is derived from ClinVar, a publicly accessible database maintained by the [National Center for Biotechnology Information (NCBI)](https://www.ncbi.nlm.nih.gov/clinvar). ClinVar provides comprehensive information on the clinical significance of genetic variants and their associations with human diseases. This dataset focuses on variants located in exome-specific regions and includes input sequences generated from the Human Reference Genome (HRG).
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+ This dataset provides a valuable resource for researchers and practitioners working on genetic variant analysis and its clinical implications. By focusing on exome-specific regions and using sequences from the Human Reference Genome, this dataset enables robust evaluation of models on clinically significant tasks.
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+ ## Dataset Details
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+ ### Methods
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+ #### Data Collection
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+ 1. **Source**: Variants are sourced from the ClinVar database.
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+ 2. **Clinical Significance**: ClinVar provides detailed information on the clinical significance of each variant and its association with human diseases.
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+ #### Data Filtering
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+ 1. **Exome-Specific Regions**: Filter the variants to include only those located in exome-specific regions.
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+ #### Sequence Generation
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+ 1. **Human Reference Genome (HRG)**: For each variant, generate input sequences from the HRG.
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+ 2. **Sequence Length**: The length of the sequences is a parameter, typically set to 100 base pairs (bp).
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+ 3. **Variant Positioning**: The variant is centered within the sequence.
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+ ### Tasks
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+ There are 7 tasks created using the ClinVar data.
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+ 1. **Exome Pathogenicity Prediction**: Same as above, but variants are stratified between train/test sets to ensure that variants from the same gene don't appear in both.
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+ 2. **Exome Variants and Non-Variants**: Predict whether an exome sequence is a mutation or not.
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+ 3. **Phenotype Prediction**:
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+ 1. **Cancer-Predisposing Syndrome**: Predict whether a variant is associated with the phenotype of Hereditary Cancer-Predisposing Syndrome.
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+ 2. **Cardiovascular Phenotypes**: Predict whether a variant is associated with cardiovascular phenotypes.
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+ 5. **Gene Prediction**:
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+ 1. **BRCA**: Predict whether a variant belongs to BRCA1, BRCA2, or neither (breast cancer genes).
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+ 2. **TTN**: Predict whether a variant belongs to the TTN gene.
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+ 3. **Top Ten Genes**: Predict whether a variant belongs to one of five (ten?) possible gene pools.
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+ - **Curated by:** [More Information Needed]
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+ - **Language(s) (NLP):** [More Information Needed]
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+ - **License:** [More Information Needed]
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+ ## Uses
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+ <!-- Address questions around how the dataset is intended to be used. -->
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+ ### Direct Use
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+ <!-- This section describes suitable use cases for the dataset. -->
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+ [More Information Needed]
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+ ### Out-of-Scope Use
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+ <!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
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+ [More Information Needed]
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+ ## Dataset Card Contact
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+ [More Information Needed]