trying yet again to make work for both streaming settings
Browse files- merfish.py +1 -1
merfish.py
CHANGED
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@@ -78,7 +78,7 @@ class MERFISH(datasets.GeneratorBasedBuilder):
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gene_df = pd.read_parquet(gene_metadata_path)
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cell_df = pd.read_parquet(cell_metadata_path)
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-
gene_names = gene_df["
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idx = 0
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for filepath in expression_files:
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gene_df = pd.read_parquet(gene_metadata_path)
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cell_df = pd.read_parquet(cell_metadata_path)
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+
gene_names = gene_df["gene_identifier"].tolist() if "gene_identifier" in gene_df.columns else gene_df.index.tolist()
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idx = 0
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for filepath in expression_files:
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