cgeorgiaw HF Staff commited on
Commit
2c2f666
·
1 Parent(s): cec9feb

trying yet again to make work for both streaming settings

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Files changed (1) hide show
  1. merfish.py +1 -1
merfish.py CHANGED
@@ -78,7 +78,7 @@ class MERFISH(datasets.GeneratorBasedBuilder):
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  gene_df = pd.read_parquet(gene_metadata_path)
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  cell_df = pd.read_parquet(cell_metadata_path)
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- gene_names = gene_df["gene_id"].tolist() if "gene_id" in gene_df.columns else gene_df.index.tolist()
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  idx = 0
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  for filepath in expression_files:
 
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  gene_df = pd.read_parquet(gene_metadata_path)
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  cell_df = pd.read_parquet(cell_metadata_path)
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+ gene_names = gene_df["gene_identifier"].tolist() if "gene_identifier" in gene_df.columns else gene_df.index.tolist()
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  idx = 0
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  for filepath in expression_files: