# Code borrowed from DaCy (Kenneth) """ TODO: - Save data to HF datasets - save as docbin using # docbin.to_disk(path, store_user_data=True) """ import json from collections import defaultdict from pathlib import Path import spacy from conllu import parse from spacy.tokens import Doc, DocBin, Span, Token from spacy.training.corpus import Corpus file_path = Path(__file__) assets_path = file_path.parent.parent / "assets" corpus_path = file_path.parent.parent / "corpus" Doc.set_extension("domain", default=None) Doc.set_extension("sent_id", default=None) Doc.set_extension("sent_ids", default=None) Doc.set_extension("conllu", default=None) Doc.set_extension("doc_id", default=None) Token.set_extension("qid", default=None) def load_cdt(custom_split_ids: bool = True): """ Load the copenhagen dependency treebank / DaCoref dataset """ cdt_path = assets_path / "dacoref" / "CDT_coref.conllu" with cdt_path.open(encoding="utf-8") as f: text = f.read() sentences = parse( text, fields=[ "id", "form", "lemma", "upos", "xpos", "feats", "head", "deprel", "deps", "misc", "coref_id", "coref_rel", "doc_id", "qid", ], ) if not custom_split_ids: # use the ones specified by the authors split_ids = {"train": [], "dev": [], "test": []} for split in split_ids: split_path = assets_path / "dacoref" / f"CDT_{split}_ids.json" with split_path.open(encoding="utf-8") as f: split_ids[split] = json.load(f) else: # use the one we created that respects the DDT splits with open(assets_path / "CDT_ddt_compatible_splits.json") as f: split_ids = json.load(f) return sentences, split_ids def _add_sent_id(docs, split, dataset): path = assets_path / dataset / f"{split}.conllu" with path.open(encoding="utf-8") as f: text = f.read() sentences = parse(text) for sent, doc in zip(sentences, docs): assert doc.text.strip() == sent.metadata["text"].strip() doc._.sent_id = sent.metadata["sent_id"] doc._.conllu = sent def load_da_ddt(): """ Loads the UD Danish Dependency Treebank """ nlp = spacy.blank("da") ddt_path = corpus_path / "da_ddt" # With a single file ddt = {} for split in ["train", "dev", "test"]: path = ddt_path / f"{split}.spacy" corpus = Corpus(path, shuffle=False) examples = list(corpus(nlp)) docs = [e.reference for e in examples] ddt[split] = docs _add_sent_id(docs, split, dataset="da_ddt") return ddt def load_dane(): """ Loads the UD Danish Dependency Treebank """ nlp = spacy.blank("da") dane_path = corpus_path / "dane" # With a single file dane = {} for split in ["train", "dev", "test"]: path = dane_path / f"{split}.spacy" corpus = Corpus(path, shuffle=False) examples = list(corpus(nlp)) docs = [e.reference for e in examples] dane[split] = docs _add_sent_id(docs, split, dataset="dane") return dane # original #def add_dane_to_ddt(ddt, dane): # """ # Add the dane data to the ddt data # """ # for split in ["train", "dev", "test"]: # assert len(ddt[split]) == len(dane[split]) # for doc, dane_doc in zip(ddt[split], dane[split]): # # # assert doc.text.strip() == dane_doc.text.strip() <-- Removed to not crash script because of whitespace misalignment. Mikkel # # Claude recommended this check instead due to benign whitespace misalignment (see diagnose_dane_to_ddt_mismatch.py): # assert [t.text for t in doc] == [t.text for t in dane_doc], ( # f"token mismatch at {doc._.sent_id}: " # f"{[t.text for t in doc]!r} vs {[t.text for t in dane_doc]!r}" # ) # # assert doc._.sent_id == dane_doc._.sent_id # # convert dane ents to ddt ents # ents = [Span(doc, e.start, e.end, label=e.label_) for e in dane_doc.ents] # doc.ents = ents # return ddt def add_dane_to_ddt(ddt, dane): """ Add the dane data to the ddt data """ dane_ddt_path = corpus_path / "dane_ddt" dane_ddt_path.mkdir(parents=True, exist_ok=True) for split in ["train", "dev", "test"]: assert len(ddt[split]) == len(dane[split]) doc_bin = DocBin(store_user_data=True) # moved inside, fresh per split for doc, dane_doc in zip(ddt[split], dane[split]): assert [t.text for t in doc] == [t.text for t in dane_doc], ( f"token mismatch at {doc._.sent_id}: " f"{[t.text for t in doc]!r} vs {[t.text for t in dane_doc]!r}" ) assert doc._.sent_id == dane_doc._.sent_id ents = [Span(doc, e.start, e.end, label=e.label_) for e in dane_doc.ents] doc.ents = ents doc_bin.add(doc) # actually add the modified doc save_path = dane_ddt_path / f"{split}.spacy" doc_bin.to_disk(save_path) return ddt def combine_docs(cdt_sentences, ddt_dane): sent_id_to_doc_instance = {} for _split, docs in ddt_dane.items(): for doc in docs: assert doc._.sent_id not in sent_id_to_doc_instance sent_id_to_doc_instance[doc._.sent_id] = doc # combine documents doc_to_be_created: dict[str, list[str]] = {} sent_id_to_sent = {} for sent in cdt_sentences: sent_id = sent.metadata["sent_id"] doc_id = sent[0]["doc_id"] if doc_id not in doc_to_be_created: doc_to_be_created[doc_id] = [] doc_to_be_created[doc_id].append(sent_id) sent_id_to_sent[sent_id] = sent # create docs domain_mapping = { "mz": "magazine", "bn": "broadcast", "nw": "newswire", } docs = [] for doc_id, sent_ids in doc_to_be_created.items(): _docs = [sent_id_to_doc_instance.pop(sent_id) for sent_id in sent_ids] doc = Doc.from_docs(_docs) doc._.doc_id = doc_id doc._.sent_ids = sent_ids doc._.domain = domain_mapping[doc_id.split("/")[0]] doc._.conllu = [sent_id_to_sent[sent_id] for sent_id in sent_ids] docs.append(doc) # add the remaining docs for sent_id in list(sent_id_to_doc_instance.keys()): doc = sent_id_to_doc_instance.pop(sent_id) docs.append(doc) return docs def add_coreference(cdt_sentences, docs): doc_id_to_doc_instance = {doc._.doc_id: doc for doc in docs} doc_id_to_cdt_sent = defaultdict(list) for sent in cdt_sentences: doc_id = sent[0]["doc_id"] doc_id_to_cdt_sent[doc_id].append(sent) for doc_id, sents in doc_id_to_cdt_sent.items(): clustermap = defaultdict(list) doc = doc_id_to_doc_instance[doc_id] tokens = [t for sent in sents for t in sent] assert len(doc) == len(tokens) for token, s_token in zip(tokens, doc): # type: ignore coref_rel = token["coref_rel"] if coref_rel == "-": continue clusters = sorted(coref_rel.split("|"), reverse=True) for mention in clusters: full_mention = mention.startswith("(") and mention.endswith(")") start_mention = mention.startswith("(") end_mention = mention.endswith(")") if full_mention: cid = mention[1:-1] clustermap[cid].insert(0, (s_token.i, s_token.i + 1)) elif start_mention: cid = mention[1:] clustermap[cid].append(s_token.i) elif end_mention: cid = mention[:-1] start = clustermap[cid].pop() clustermap[cid].insert(0, (start, s_token.i + 1)) for i, (_key, vals) in enumerate(clustermap.items()): spans = [doc[start:end] for start, end in vals] skey = f"coref_clusters_{i}" doc.spans[skey] = spans # parse and get heads for i, (_key, val) in enumerate(clustermap.items()): heads = [doc[start:end].root.i for start, end in val] heads = list(set(heads)) if len(heads) == 1: continue spans = [doc[hh : hh + 1] for hh in heads] skey = f"coref_head_clusters_{i}" doc.spans[skey] = spans return docs def add_qid(docs): # add QID to each token for doc in docs: if doc._.doc_id is None: continue sents = doc._.conllu tokens = [t for sent in sents for t in sent] qid_spans = {} # construct qid spans to check if any of them are not entities qid = None start = None for t, s_t in zip(tokens, doc): end_of_span = qid is not None and (t["qid"] == "-" or t["qid"] != qid) if end_of_span: qid_spans[(start, s_t.i)] = qid start = None qid = None if t["qid"] != "-": qid = t["qid"] assert qid.startswith("Q") s_t._.qid = qid if start is None: start = s_t.i if start is not None: qid_spans[(start, s_t.i)] = qid # type: ignore ents_spans = {(ent.start, ent.end) for ent in doc.ents} for qid_span in qid_spans: if qid_span[1] - qid_span[0] == 1: continue # ignore single token spans if qid_span not in ents_spans: print( f"{doc[qid_span[0]:qid_span[1]]} with QID {qid_spans[qid_span]} is not in entities", ) # great no problems here!! # map QID to each entity new_ents = [] for ent in doc.ents: start, end = ent.start, ent.end qids = [t["qid"] for t in tokens[start:end]] unique_qid = len(set(qids)) == 1 if unique_qid: qid = qids[0] new_ent = Span(doc, start, end, label=ent.label_, kb_id=qid) else: print(f"Ent {ent} has multiple QIDs: {qids}") new_ent = Span(doc, start, end, label=ent.label_) new_ents.append(new_ent) doc.ents = new_ents return docs cdt_sentences, cdf_split_ids = load_cdt() doc_id_to_split_mapping = { id_: split for split, ids in cdf_split_ids.items() for id_ in ids } ddt = load_da_ddt() dane = load_dane() ddt_dane = add_dane_to_ddt(ddt, dane) # add doc_id sent_id_to_doc_id = {} for sent in cdt_sentences: sent_id_to_doc_id[sent.metadata["sent_id"]] = sent[0]["doc_id"] for split in ["train", "dev", "test"]: for doc in ddt_dane[split]: if doc._.sent_id in sent_id_to_doc_id: doc._.doc_id = sent_id_to_doc_id[doc._.sent_id] # check that splits are the same -- they are not # for split in ["train", "dev", "test"]: # for doc in ddt_dane[split]: # assert doc_id_to_split_mapping[doc._.doc_id] == split # any doc id in cdt that is not in ddt_dane doc_ids = {doc._.doc_id for split, docs in ddt_dane.items() for doc in docs} doc_ids_cdt = {sent[0]["doc_id"] for sent in cdt_sentences} assert len(doc_ids_cdt - doc_ids) == 0 docs = combine_docs(cdt_sentences, ddt_dane) docs = add_coreference(cdt_sentences, docs) #docs = add_qid(docs) doc_bin = DocBin(store_user_data=True) for doc in docs: doc_bin.add(doc) save_path = corpus_path / "cdt_ddt" / "data.spacy" save_path.parent.mkdir(parents=True, exist_ok=True) doc_bin.to_disk(save_path) # do it again for the cdt only but do it in splits: for split in ["train", "dev", "test"]: doc_bin = DocBin(store_user_data=True) for doc in docs: if doc._.doc_id is None: continue _split = doc_id_to_split_mapping[doc._.doc_id] if _split != split: continue doc_bin.add(doc) save_path = corpus_path / "cdt" / f"{split}.spacy" save_path.parent.mkdir(parents=True, exist_ok=True) doc_bin.to_disk(save_path)