test

.gitattributes

@@ -31,7 +31,7 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.tgz filter=lfs diff=lfs merge=lfs -text
 *.wasm filter=lfs diff=lfs merge=lfs -text
 *.xz filter=lfs diff=lfs merge=lfs -text
-*.zip filter=lfs diff=lfs merge=lfs -text
+# *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
 # Audio files - uncompressed

RDpatient_data/PUMCH/PUMCH_ADM.jsonl

@@ -1,75 +0,0 @@
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-{"Phenotype": ["HP:0000028", "HP:0000670", "HP:0001262", "HP:0001618", "HP:0008947", "HP:0011968", "HP:0012420"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000218", "HP:0000277", "HP:0001319", "HP:0001511", "HP:0001788", "HP:0002033", "HP:0003648", "HP:0004396", "HP:0008689", "HP:0010490"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000722", "HP:0000750", "HP:0002033", "HP:0008897", "HP:0008947"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000054", "HP:0000545", "HP:0000646", "HP:0001298", "HP:0001350", "HP:0001513", "HP:0001558", "HP:0002090", "HP:0002170", "HP:0002591", "HP:0002637", "HP:0002901", "HP:0002912", "HP:0003019", "HP:0003215", "HP:0003571", "HP:0003648", "HP:0004886", "HP:0008689", "HP:0008897", "HP:0008947", "HP:0012071", "HP:0012389", "HP:0012420", "HP:0012768", "HP:0030260", "HP:0100502", "HP:0100507"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"], "Department": "Pediatrics"}
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-{"Phenotype": ["HP:0001324", "HP:0001350", "HP:0001392", "HP:0001744", "HP:0002160", "HP:0002307", "HP:0002311", "HP:0002339", "HP:0002907", "HP:0003155", "HP:0003281", "HP:0004305", "HP:0004324", "HP:0004341", "HP:0010837", "HP:0010839", "HP:0030237", "HP:0200032", "HP:0430023"], "RareDisease": ["CCRD:37", "OMIM:277900", "ORPHA:905"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000093", "HP:0001350", "HP:0002307", "HP:0002378", "HP:0010837", "HP:0010839", "HP:0030237"], "RareDisease": ["CCRD:37", "OMIM:277900", "ORPHA:905"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000142", "HP:0000277", "HP:0000365", "HP:0000509", "HP:0000769", "HP:0000957", "HP:0000988", "HP:0001288", "HP:0002653", "HP:0003084", "HP:0003155", "HP:0003367", "HP:0005605", "HP:0005616", "HP:0010465", "HP:0010734", "HP:0025134", "HP:0030341", "HP:0030344", "HP:0030766", "HP:0030838", "HP:0040261", "HP:0100608"], "RareDisease": ["CCRD:69", "ORPHA:562", "OMIM:174800"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000138", "HP:0000142", "HP:0000769", "HP:0000957", "HP:0005616", "HP:0010314", "HP:0010735", "HP:0010736", "HP:0012531", "HP:0025134", "HP:0030341", "HP:0030344", "HP:0030812", "HP:0040261", "HP:0100608", "HP:0100878"], "RareDisease": ["CCRD:69", "ORPHA:562", "OMIM:174800"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000845", "HP:0000870", "HP:0000957", "HP:0001061", "HP:0002683", "HP:0003155", "HP:0005616", "HP:0010734", "HP:0012411", "HP:0030088", "HP:0045058", "HP:0100039"], "RareDisease": ["CCRD:69", "ORPHA:562", "OMIM:174800"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000539", "HP:0000572", "HP:0000957", "HP:0004437", "HP:0005605", "HP:0010735", "HP:0011217"], "RareDisease": ["CCRD:69", "ORPHA:562", "OMIM:174800"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000142", "HP:0000750", "HP:0000769", "HP:0000957", "HP:0003155", "HP:0005605", "HP:0011788", "HP:0012411", "HP:0025134", "HP:0031098", "HP:0031216", "HP:0100608", "HP:0100738"], "RareDisease": ["CCRD:69", "ORPHA:562", "OMIM:174800"], "Department": "Pediatrics"}
-{"Phenotype": ["HP:0000023", "HP:0000822", "HP:0001609", "HP:0001640", "HP:0001646", "HP:0001653", "HP:0001659", "HP:0001711", "HP:0001945", "HP:0001962", "HP:0002094", "HP:0002105", "HP:0002110", "HP:0004325", "HP:0004970", "HP:0005162", "HP:0031138", "HP:0031245"], "RareDisease": ["ORPHA:284979", "OMIM:154700", "ORPHA:558", "CCRD:68"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0002751"], "RareDisease": ["ORPHA:284979", "OMIM:154700", "ORPHA:558", "CCRD:68"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000098", "HP:0001634", "HP:0001639", "HP:0001646", "HP:0001653", "HP:0001659", "HP:0001704", "HP:0001712", "HP:0002094", "HP:0002616", "HP:0002751", "HP:0002789", "HP:0003418", "HP:0003546", "HP:0005180", "HP:0030148", "HP:0100749"], "RareDisease": ["ORPHA:284979", "OMIM:154700", "ORPHA:558", "CCRD:68"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001132", "HP:0002650", "HP:0003419", "HP:0011003", "HP:0012019"], "RareDisease": ["ORPHA:284979", "OMIM:154700", "ORPHA:558", "CCRD:68"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001640", "HP:0002094", "HP:0003270", "HP:0003546", "HP:0004396", "HP:0012819", "HP:0031185"], "RareDisease": ["ORPHA:284979", "OMIM:154700", "ORPHA:558", "CCRD:68"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000131", "HP:0001279", "HP:0001324", "HP:0001640", "HP:0001644", "HP:0001702", "HP:0001708", "HP:0001824", "HP:0001962", "HP:0002018", "HP:0002875", "HP:0003077", "HP:0004396", "HP:0004751", "HP:0004890", "HP:0005133", "HP:0005162", "HP:0006671", "HP:0006673", "HP:0006682", "HP:0007185", "HP:0010741", "HP:0011037", "HP:0030718", "HP:0031185", "HP:0031246"], "RareDisease": ["OMIM:610193", "OMIM:611528", "OMIM:609040", "OMIM:607450", "OMIM:610476", "OMIM:601214", "OMIM:601419", "OMIM:600996", "OMIM:604400", "OMIM:107970", "OMIM:602087", "OMIM:602086", "OMIM:604401", "ORPHA:98909", "CCRD:52.2", "OMIM:615616"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001640", "HP:0001653", "HP:0001688", "HP:0001962", "HP:0002013", "HP:0002153", "HP:0002527", "HP:0003259", "HP:0004756", "HP:0005133", "HP:0005180", "HP:0006682", "HP:0007340", "HP:0010872", "HP:0011703", "HP:0011712", "HP:0012250", "HP:0012667", "HP:0025169"], "RareDisease": ["OMIM:610193", "OMIM:611528", "OMIM:609040", "OMIM:607450", "OMIM:610476", "OMIM:601214", "OMIM:601419", "OMIM:600996", "OMIM:604400", "OMIM:107970", "OMIM:602087", "OMIM:602086", "OMIM:604401", "ORPHA:98909", "CCRD:52.2", "OMIM:615616"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001279", "HP:0001407", "HP:0001541", "HP:0001633", "HP:0001640", "HP:0001641", "HP:0001646", "HP:0001649", "HP:0001653", "HP:0001698", "HP:0001702", "HP:0001708", "HP:0001709", "HP:0001711", "HP:0002202", "HP:0002360", "HP:0002572", "HP:0002908", "HP:0003073", "HP:0003236", "HP:0003473", "HP:0003546", "HP:0003573", "HP:0004324", "HP:0004396", "HP:0005180", "HP:0007185", "HP:0010438", "HP:0010741", "HP:0011037", "HP:0012667", "HP:0012764", "HP:0025168", "HP:0030718", "HP:0032232"], "RareDisease": ["OMIM:610193", "OMIM:611528", "OMIM:609040", "OMIM:607450", "OMIM:610476", "OMIM:601214", "OMIM:601419", "OMIM:600996", "OMIM:604400", "OMIM:107970", "OMIM:602087", "OMIM:602086", "OMIM:604401", "ORPHA:98909", "CCRD:52.2", "OMIM:615616"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000787", "HP:0000988", "HP:0001028", "HP:0001279", "HP:0001324", "HP:0001640", "HP:0001707", "HP:0001708", "HP:0001711", "HP:0001962", "HP:0001977", "HP:0002094", "HP:0002140", "HP:0004756", "HP:0004890", "HP:0005135", "HP:0005180", "HP:0006682", "HP:0007185", "HP:0011663", "HP:0011995", "HP:0012818", "HP:0012819", "HP:0025168", "HP:0025169", "HP:0100576"], "RareDisease": ["OMIM:610193", "OMIM:611528", "OMIM:609040", "OMIM:607450", "OMIM:610476", "OMIM:601214", "OMIM:601419", "OMIM:600996", "OMIM:604400", "OMIM:107970", "OMIM:602087", "OMIM:602086", "OMIM:604401", "ORPHA:98909", "CCRD:52.2", "OMIM:615616"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001663", "HP:0002090", "HP:0002094", "HP:0003546", "HP:0006562", "HP:0012251", "HP:0012735"], "RareDisease": ["OMIM:611777", "OMIM:601144", "OMIM:613119", "OMIM:612838", "OMIM:611876", "OMIM:613123", "OMIM:616399", "CCRD:14.3", "OMIM:613120", "OMIM:611875", "ORPHA:130"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000211", "HP:0000975", "HP:0001279", "HP:0002013", "HP:0007185", "HP:0011712", "HP:0012251"], "RareDisease": ["OMIM:611777", "OMIM:601144", "OMIM:613119", "OMIM:612838", "OMIM:611876", "OMIM:613123", "OMIM:616399", "CCRD:14.3", "OMIM:613120", "OMIM:611875", "ORPHA:130"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000019", "HP:0000020", "HP:0000024", "HP:0001279", "HP:0001324", "HP:0003236", "HP:0003546", "HP:0007185", "HP:0010741", "HP:0012251", "HP:0032232", "HP:0100518", "HP:0100576"], "RareDisease": ["OMIM:611777", "OMIM:601144", "OMIM:613119", "OMIM:612838", "OMIM:611876", "OMIM:613123", "OMIM:616399", "CCRD:14.3", "OMIM:613120", "OMIM:611875", "ORPHA:130"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001324", "HP:0001698", "HP:0001702", "HP:0001962", "HP:0002013", "HP:0002027", "HP:0002094", "HP:0003546", "HP:0004396", "HP:0004948", "HP:0005110", "HP:0005180", "HP:0010741", "HP:0011712", "HP:0012249", "HP:0025169", "HP:0030718", "HP:0031185", "HP:0031295", "HP:3000063"], "RareDisease": ["OMIM:115210", "CCRD:52.3", "OMIM:612422", "OMIM:615248", "OMIM:617047"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0000019", "HP:0000787", "HP:0001639", "HP:0001698", "HP:0001712", "HP:0001977", "HP:0002090", "HP:0002092", "HP:0002094", "HP:0002900", "HP:0002908", "HP:0003546", "HP:0003573", "HP:0005110", "HP:0005133", "HP:0005135", "HP:0005144", "HP:0005180", "HP:0006682", "HP:0010741", "HP:0011712", "HP:0012664", "HP:0012667", "HP:0025168", "HP:0030718", "HP:0031138", "HP:0031245", "HP:0031295", "HP:0100518", "HP:0100749"], "RareDisease": ["OMIM:115210", "CCRD:52.3", "OMIM:612422", "OMIM:615248", "OMIM:617047"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001082", "HP:0001342", "HP:0001541", "HP:0001633", "HP:0001640", "HP:0001698", "HP:0001702", "HP:0001708", "HP:0001747", "HP:0002027", "HP:0002092", "HP:0002094", "HP:0002202", "HP:0002209", "HP:0002240", "HP:0002908", "HP:0003324", "HP:0003546", "HP:0003573", "HP:0004754", "HP:0004927", "HP:0005345", "HP:0006673", "HP:0010741", "HP:0011037", "HP:0012664", "HP:0025168", "HP:0030718", "HP:0031185", "HP:0031295"], "RareDisease": ["OMIM:115210", "CCRD:52.3", "OMIM:612422", "OMIM:615248", "OMIM:617047"], "Department": "Cardiology"}
-{"Phenotype": ["HP:0001028", "HP:0001258", "HP:0002355", "HP:0003445", "HP:0003487", "HP:0003698", "HP:0006135", "HP:0006801", "HP:0007340", "HP:0012651", "HP:0100711"], "RareDisease": ["OMIM:105400", "OMIM:617892", "OMIM:602099", "OMIM:205100", "OMIM:611895", "OMIM:614373", "OMIM:613954", "OMIM:614808", "ORPHA:357043", "OMIM:608627", "OMIM:617921", "ORPHA:300605", "OMIM:183090", "OMIM:612069", "OMIM:614696", "OMIM:616208", "OMIM:615426", "OMIM:602433", "OMIM:300857", "OMIM:608030", "OMIM:606070", "ORPHA:803", "OMIM:612577", "OMIM:613435", "CCRD:4", "OMIM:615515", "OMIM:617839", "OMIM:606640"], "Department": "Neurology"}
-{"Phenotype": ["HP:0001350", "HP:0002500", "HP:0002637", "HP:0002679", "HP:0003319", "HP:0003416", "HP:0003445", "HP:0003484", "HP:0005108", "HP:0012513", "HP:0012735", "HP:0030811"], "RareDisease": ["OMIM:105400", "OMIM:617892", "OMIM:602099", "OMIM:205100", "OMIM:611895", "OMIM:614373", "OMIM:613954", "OMIM:614808", "ORPHA:357043", "OMIM:608627", "OMIM:617921", "ORPHA:300605", "OMIM:183090", "OMIM:612069", "OMIM:614696", "OMIM:616208", "OMIM:615426", "OMIM:602433", "OMIM:300857", "OMIM:608030", "OMIM:606070", "ORPHA:803", "OMIM:612577", "OMIM:613435", "CCRD:4", "OMIM:615515", "OMIM:617839", "OMIM:606640"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000822", "HP:0001259", "HP:0001260", "HP:0002019", "HP:0002062", "HP:0002064", "HP:0002355", "HP:0002360", "HP:0002425", "HP:0003484", "HP:0003487", "HP:0003546", "HP:0003551", "HP:0006801", "HP:0007340", "HP:0008969", "HP:0009129", "HP:0011448", "HP:0030902", "HP:0030906", "HP:0031993"], "RareDisease": ["OMIM:105400", "OMIM:617892", "OMIM:602099", "OMIM:205100", "OMIM:611895", "OMIM:614373", "OMIM:613954", "OMIM:614808", "ORPHA:357043", "OMIM:608627", "OMIM:617921", "ORPHA:300605", "OMIM:183090", "OMIM:612069", "OMIM:614696", "OMIM:616208", "OMIM:615426", "OMIM:602433", "OMIM:300857", "OMIM:608030", "OMIM:606070", "ORPHA:803", "OMIM:612577", "OMIM:613435", "CCRD:4", "OMIM:615515", "OMIM:617839", "OMIM:606640"], "Department": "Neurology"}
-{"Phenotype": ["HP:0001761", "HP:0001883", "HP:0001987", "HP:0002160", "HP:0003236", "HP:0003445", "HP:0004325", "HP:0005108", "HP:0006135", "HP:0007083", "HP:0007256", "HP:0008959", "HP:0008994", "HP:0008997", "HP:0009053", "HP:0009072", "HP:0009130", "HP:0012391", "HP:0100261", "HP:0100502"], "RareDisease": ["OMIM:105400", "OMIM:617892", "OMIM:602099", "OMIM:205100", "OMIM:611895", "OMIM:614373", "OMIM:613954", "OMIM:614808", "ORPHA:357043", "OMIM:608627", "OMIM:617921", "ORPHA:300605", "OMIM:183090", "OMIM:612069", "OMIM:614696", "OMIM:616208", "OMIM:615426", "OMIM:602433", "OMIM:300857", "OMIM:608030", "OMIM:606070", "ORPHA:803", "OMIM:612577", "OMIM:613435", "CCRD:4", "OMIM:615515", "OMIM:617839", "OMIM:606640"], "Department": "Neurology"}
-{"Phenotype": ["HP:0001367", "HP:0002355", "HP:0002492", "HP:0003445", "HP:0003484", "HP:0003808", "HP:0004188", "HP:0007010", "HP:0007181", "HP:0007340", "HP:0008991", "HP:0030237"], "RareDisease": ["OMIM:105400", "OMIM:617892", "OMIM:602099", "OMIM:205100", "OMIM:611895", "OMIM:614373", "OMIM:613954", "OMIM:614808", "ORPHA:357043", "OMIM:608627", "OMIM:617921", "ORPHA:300605", "OMIM:183090", "OMIM:612069", "OMIM:614696", "OMIM:616208", "OMIM:615426", "OMIM:602433", "OMIM:300857", "OMIM:608030", "OMIM:606070", "ORPHA:803", "OMIM:612577", "OMIM:613435", "CCRD:4", "OMIM:615515", "OMIM:617839", "OMIM:606640"], "Department": "Neurology"}
-{"Phenotype": ["HP:0001488", "HP:0003403", "HP:0003473", "HP:0003484", "HP:0003551", "HP:0003698", "HP:0030000", "HP:0030202", "HP:3000072"], "RareDisease": ["OMIM:254200", "CCRD:32", "ORPHA:589"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000622", "HP:0000634", "HP:0000651", "HP:0000657", "HP:0001488", "HP:0002015", "HP:0002094", "HP:0003324", "HP:0003388", "HP:0003403", "HP:0003473", "HP:0003484", "HP:0004347", "HP:0005216", "HP:0007340", "HP:0007687", "HP:0030000"], "RareDisease": ["OMIM:254200", "CCRD:32", "ORPHA:589"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000651", "HP:0001488", "HP:0002015", "HP:0002352", "HP:0002355", "HP:0002500", "HP:0002619", "HP:0002621", "HP:0003388", "HP:0003403", "HP:0003546", "HP:0005344", "HP:0007687", "HP:0030000", "HP:0030208"], "RareDisease": ["OMIM:254200", "CCRD:32", "ORPHA:589"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000157", "HP:0000651", "HP:0000716", "HP:0000819", "HP:0000822", "HP:0001260", "HP:0001315", "HP:0001350", "HP:0001488", "HP:0002140", "HP:0002355", "HP:0002500", "HP:0003077", "HP:0003207", "HP:0003388", "HP:0003457", "HP:0003484", "HP:0005216", "HP:0007201", "HP:0007687", "HP:0030202", "HP:0030208", "HP:0430023"], "RareDisease": ["OMIM:254200", "CCRD:32", "ORPHA:589"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000651", "HP:0000822", "HP:0000872", "HP:0001260", "HP:0001488", "HP:0001609", "HP:0001730", "HP:0002014", "HP:0002015", "HP:0002134", "HP:0002140", "HP:0002621", "HP:0003324", "HP:0003403", "HP:0003473", "HP:0003701", "HP:0004325", "HP:0007687", "HP:0010516", "HP:0012273", "HP:0012389", "HP:0030000", "HP:0030202", "HP:0100522"], "RareDisease": ["OMIM:254200", "CCRD:32", "ORPHA:589"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000012", "HP:0000016", "HP:0000019", "HP:0000020", "HP:0000875", "HP:0001397", "HP:0002019", "HP:0002067", "HP:0002134", "HP:0002304", "HP:0002312", "HP:0002345", "HP:0002360", "HP:0002362", "HP:0002527", "HP:0003457", "HP:0004325", "HP:0005162", "HP:0007010", "HP:0007064", "HP:0009027", "HP:0010532", "HP:0012397", "HP:0012531", "HP:0012614", "HP:0012651", "HP:0030047", "HP:0030237", "HP:0100507", "HP:0100515", "HP:0100518"], "RareDisease": ["ORPHA:102", "ORPHA:98933", "CCRD:77", "ORPHA:227510", "OMIM:146500"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000012", "HP:0000019", "HP:0000020", "HP:0000217", "HP:0000572", "HP:0000822", "HP:0001028", "HP:0001098", "HP:0001260", "HP:0001279", "HP:0001350", "HP:0001655", "HP:0002075", "HP:0002312", "HP:0002353", "HP:0002354", "HP:0002403", "HP:0002442", "HP:0002500", "HP:0002515", "HP:0002540", "HP:0002607", "HP:0002634", "HP:0002637", "HP:0003445", "HP:0003487", "HP:0004324", "HP:0004396", "HP:0004673", "HP:0004942", "HP:0006801", "HP:0006879", "HP:0007010", "HP:0007361", "HP:0008696", "HP:0010438", "HP:0010526", "HP:0010875", "HP:0011441", "HP:0011448", "HP:0012651", "HP:0030902", "HP:0100515", "HP:0100518", "HP:0100639"], "RareDisease": ["ORPHA:102", "ORPHA:98933", "CCRD:77", "ORPHA:227510", "OMIM:146500"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000020", "HP:0000738", "HP:0000752", "HP:0001279", "HP:0001397", "HP:0002067", "HP:0002075", "HP:0002136", "HP:0002198", "HP:0002359", "HP:0002360", "HP:0002487", "HP:0002527", "HP:0002540", "HP:0002621", "HP:0003416", "HP:0003418", "HP:0003487", "HP:0003551", "HP:0003698", "HP:0005108", "HP:0005344", "HP:0006879", "HP:0006895", "HP:0007010", "HP:0007311", "HP:0007340", "HP:0008480", "HP:0012031", "HP:0012651", "HP:0012735"], "RareDisease": ["ORPHA:102", "ORPHA:98933", "CCRD:77", "ORPHA:227510", "OMIM:146500"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000012", "HP:0000019", "HP:0000020", "HP:0001279", "HP:0001297", "HP:0001350", "HP:0002019", "HP:0002059", "HP:0002075", "HP:0002143", "HP:0002403", "HP:0002500", "HP:0002516", "HP:0002637", "HP:0002922", "HP:0003445", "HP:0003487", "HP:0003551", "HP:0007185", "HP:0007340", "HP:0008775", "HP:0010535", "HP:0012229", "HP:0012534", "HP:0012651", "HP:0012874", "HP:0100008", "HP:0100515", "HP:0100518", "HP:0100526", "HP:0100639", "HP:0100712"], "RareDisease": ["ORPHA:102", "ORPHA:98933", "CCRD:77", "ORPHA:227510", "OMIM:146500"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000017", "HP:0000019", "HP:0000020", "HP:0000026", "HP:0000819", "HP:0001350", "HP:0002067", "HP:0002136", "HP:0002317", "HP:0002354", "HP:0002403", "HP:0002442", "HP:0002527", "HP:0002600", "HP:0002607", "HP:0003401", "HP:0003487", "HP:0004325", "HP:0005108", "HP:0006938", "HP:0007328", "HP:0008711", "HP:0010614", "HP:0010875", "HP:0012651", "HP:0031993", "HP:0100515", "HP:0100518", "HP:0100712"], "RareDisease": ["ORPHA:102", "ORPHA:98933", "CCRD:77", "ORPHA:227510", "OMIM:146500"], "Department": "Neurology"}
-{"Phenotype": ["HP:0000017", "HP:0000093", "HP:0000790", "HP:0000822", "HP:0001061", "HP:0002153", "HP:0003073", "HP:0003124", "HP:0003149", "HP:0003259", "HP:0005994", "HP:0012086"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0000822", "HP:0001945", "HP:0003124", "HP:0003259", "HP:0008625", "HP:0012086", "HP:0012587", "HP:0012615"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000123", "HP:0000246", "HP:0001757", "HP:0002907", "HP:0012086", "HP:0012587"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000017", "HP:0000093", "HP:0000099", "HP:0000790", "HP:0003496", "HP:0003565", "HP:0005994", "HP:0012622", "HP:0100515"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0000099", "HP:0000365", "HP:0000572", "HP:0001945", "HP:0003124", "HP:0003259", "HP:0003565", "HP:0011110", "HP:0012086", "HP:0012587"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000092", "HP:0000093", "HP:0000097", "HP:0000099", "HP:0000600", "HP:0001945", "HP:0002209", "HP:0003073", "HP:0003124", "HP:0003259", "HP:0003651", "HP:0004324", "HP:0005576"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0000099", "HP:0000107", "HP:0000365", "HP:0000790", "HP:0001894", "HP:0001974", "HP:0003073", "HP:0003124", "HP:0004396", "HP:0008775", "HP:0012622"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0000217", "HP:0001520", "HP:0001945", "HP:0003124", "HP:0004325", "HP:0012587"], "RareDisease": ["OMIM:301050", "OMIM:203780", "OMIM:104200", "ORPHA:63", "CCRD:3"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0000217", "HP:0000790", "HP:0000822", "HP:0001622", "HP:0001894", "HP:0001974", "HP:0002028", "HP:0002329", "HP:0002829", "HP:0003138", "HP:0003259", "HP:0004325"], "RareDisease": ["ORPHA:324", "CCRD:27", "OMIM:301500"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000069", "HP:0000093", "HP:0000372", "HP:0003124", "HP:0004277", "HP:0005918", "HP:0009900", "HP:0040090", "HP:0100582"], "RareDisease": ["ORPHA:324", "CCRD:27", "OMIM:301500"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000017", "HP:0000093", "HP:0000099", "HP:0000107", "HP:0000126", "HP:0000622", "HP:0000790", "HP:0000794", "HP:0000822", "HP:0001279", "HP:0001639", "HP:0001824", "HP:0001962", "HP:0002155", "HP:0003124", "HP:0003259", "HP:0005115", "HP:0005144", "HP:0005264", "HP:0006682", "HP:0010741", "HP:0011712", "HP:0012249", "HP:0012622", "HP:0025168", "HP:0100749"], "RareDisease": ["ORPHA:324", "CCRD:27", "OMIM:301500"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000128", "HP:0000988", "HP:0001657", "HP:0002094", "HP:0002900", "HP:0002914", "HP:0002917", "HP:0003081", "HP:0003324", "HP:0003401", "HP:0005567", "HP:0012604", "HP:0012605", "HP:0012608", "HP:0200114"], "RareDisease": ["CCRD:33", "ORPHA:358", "OMIM:263800"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000017", "HP:0000128", "HP:0000975", "HP:0001025", "HP:0001397", "HP:0001962", "HP:0002149", "HP:0002900", "HP:0002914", "HP:0003081", "HP:0007340", "HP:0011703", "HP:0012605", "HP:0031964"], "RareDisease": ["CCRD:33", "ORPHA:358", "OMIM:263800"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000155", "HP:0000848", "HP:0001279", "HP:0001962", "HP:0002014", "HP:0002094", "HP:0002900", "HP:0002917", "HP:0003324", "HP:0007340", "HP:0010532", "HP:0010872", "HP:0011280", "HP:0011954", "HP:0012534", "HP:0100576"], "RareDisease": ["CCRD:33", "ORPHA:358", "OMIM:263800"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000128", "HP:0002900", "HP:0003081", "HP:0003127", "HP:0200114"], "RareDisease": ["CCRD:33", "ORPHA:358", "OMIM:263800"], "Department": "Nephrology"}
-{"Phenotype": ["HP:0000093", "HP:0001025", "HP:0001873", "HP:0001875", "HP:0001876", "HP:0001882", "HP:0001889", "HP:0001923", "HP:0002014", "HP:0002321", "HP:0003074", "HP:0003324", "HP:0003573", "HP:0004325", "HP:0008282", "HP:0011273", "HP:0012086", "HP:0012135", "HP:0012587", "HP:0031956", "HP:0100724"], "RareDisease": ["OMIM:300818", "CCRD:88", "OMIM:615399", "ORPHA:447"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000017", "HP:0000093", "HP:0000790", "HP:0000822", "HP:0000952", "HP:0001081", "HP:0001289", "HP:0001596", "HP:0001649", "HP:0001903", "HP:0001915", "HP:0001923", "HP:0001945", "HP:0001962", "HP:0002013", "HP:0002014", "HP:0002018", "HP:0002094", "HP:0002202", "HP:0002209", "HP:0002900", "HP:0003074", "HP:0003259", "HP:0003270", "HP:0003565", "HP:0003573", "HP:0004324", "HP:0008282", "HP:0008775", "HP:0012086", "HP:0031245", "HP:0100519"], "RareDisease": ["OMIM:300818", "CCRD:88", "OMIM:615399", "ORPHA:447"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000716", "HP:0001407", "HP:0001433", "HP:0001541", "HP:0001744", "HP:0001824", "HP:0001875", "HP:0001882", "HP:0001903", "HP:0001923", "HP:0002240", "HP:0003270", "HP:0003324", "HP:0004298", "HP:0004396", "HP:0004447", "HP:0005201", "HP:0005264", "HP:0005513", "HP:0008442", "HP:0010741", "HP:0011273", "HP:0011974", "HP:0012086", "HP:0031554", "HP:0031555", "HP:0041048", "HP:0100016"], "RareDisease": ["OMIM:300818", "CCRD:88", "OMIM:615399", "ORPHA:447"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000155", "HP:0000988", "HP:0001873", "HP:0001875", "HP:0001876", "HP:0001882", "HP:0001903", "HP:0001923", "HP:0001945", "HP:0002573", "HP:0002788", "HP:0002863", "HP:0011273", "HP:0012130", "HP:0012143"], "RareDisease": ["OMIM:300818", "CCRD:88", "OMIM:615399", "ORPHA:447"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000979", "HP:0000988", "HP:0001324", "HP:0001541", "HP:0001873", "HP:0001903", "HP:0001945", "HP:0001974", "HP:0002240", "HP:0002321", "HP:0003419", "HP:0003573", "HP:0004831", "HP:0011947", "HP:0012086", "HP:0012130", "HP:0012135", "HP:0012156", "HP:0012514", "HP:0030169", "HP:0030242", "HP:0031245", "HP:0100724"], "RareDisease": ["OMIM:300818", "CCRD:88", "OMIM:615399", "ORPHA:447"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000093", "HP:0000138", "HP:0000790", "HP:0000821", "HP:0000822", "HP:0001000", "HP:0001433", "HP:0001541", "HP:0001635", "HP:0001640", "HP:0001655", "HP:0001698", "HP:0001702", "HP:0001744", "HP:0001894", "HP:0001903", "HP:0001945", "HP:0002090", "HP:0002092", "HP:0002148", "HP:0002202", "HP:0002573", "HP:0002716", "HP:0002901", "HP:0002925", "HP:0003073", "HP:0003270", "HP:0003565", "HP:0004325", "HP:0005108", "HP:0005225", "HP:0005345", "HP:0010741", "HP:0011227", "HP:0012050", "HP:0012226", "HP:0012531", "HP:0012534", "HP:0030160", "HP:0030718", "HP:0031295", "HP:0031508", "HP:0100879"], "RareDisease": ["ORPHA:2905", "CCRD:91"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000282", "HP:0000735", "HP:0000741", "HP:0000821", "HP:0000870", "HP:0000953", "HP:0001085", "HP:0001394", "HP:0001433", "HP:0001541", "HP:0001698", "HP:0001744", "HP:0001903", "HP:0001945", "HP:0002094", "HP:0002202", "HP:0002716", "HP:0003075", "HP:0003270", "HP:0003457", "HP:0003484", "HP:0004325", "HP:0004396", "HP:0005108", "HP:0005201", "HP:0009027", "HP:0010741", "HP:0012050", "HP:0012514", "HP:0012534", "HP:0031508", "HP:0032290"], "RareDisease": ["ORPHA:2905", "CCRD:91"], "Department": "Hematology"}
-{"Phenotype": ["HP:0001085", "HP:0001397", "HP:0001658", "HP:0001677", "HP:0001744", "HP:0001894", "HP:0002092", "HP:0003261", "HP:0003551", "HP:0005625", "HP:0006698", "HP:0007220", "HP:0007340", "HP:0011402", "HP:0011711", "HP:0012135", "HP:0012534", "HP:0012651", "HP:0025168", "HP:0031295", "HP:0045010", "HP:0100711"], "RareDisease": ["ORPHA:2905", "CCRD:91"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000093", "HP:0000095", "HP:0000126", "HP:0000464", "HP:0000790", "HP:0000821", "HP:0000822", "HP:0000953", "HP:0001072", "HP:0001541", "HP:0001698", "HP:0001711", "HP:0001744", "HP:0001824", "HP:0001894", "HP:0001969", "HP:0002014", "HP:0002140", "HP:0002149", "HP:0002153", "HP:0002202", "HP:0002716", "HP:0002840", "HP:0003259", "HP:0003261", "HP:0003270", "HP:0003474", "HP:0003551", "HP:0003565", "HP:0004295", "HP:0004387", "HP:0005180", "HP:0007340", "HP:0010741", "HP:0011732", "HP:0011733", "HP:0012534", "HP:0030237", "HP:0031508"], "RareDisease": ["ORPHA:2905", "CCRD:91"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000282", "HP:0000787", "HP:0000790", "HP:0000821", "HP:0000958", "HP:0001541", "HP:0001640", "HP:0001646", "HP:0001698", "HP:0001744", "HP:0001824", "HP:0001903", "HP:0002092", "HP:0002149", "HP:0002202", "HP:0002360", "HP:0002729", "HP:0002875", "HP:0002901", "HP:0003073", "HP:0003259", "HP:0003270", "HP:0003546", "HP:0004332", "HP:0004348", "HP:0004396", "HP:0005133", "HP:0005231", "HP:0011227", "HP:0012514", "HP:0031185", "HP:0031245", "HP:0031507", "HP:0032335", "HP:0040189", "HP:0100016", "HP:0100281"], "RareDisease": ["ORPHA:2905", "CCRD:91"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000020", "HP:0001433", "HP:0001538", "HP:0001945", "HP:0002205", "HP:0002254", "HP:0002527", "HP:0002607", "HP:0004333", "HP:0012735"], "RareDisease": ["ORPHA:77293", "OMIM:607616", "CCRD:82.2", "CCRD:82.3", "OMIM:257220", "ORPHA:646", "OMIM:607625", "CCRD:82.1", "OMIM:257200"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000545", "HP:0000610", "HP:0001744", "HP:0001882", "HP:0001923", "HP:0002014", "HP:0002027", "HP:0002134", "HP:0002315", "HP:0002716", "HP:0003146", "HP:0004396", "HP:0006887", "HP:0008897", "HP:0100016", "HP:0430023"], "RareDisease": ["ORPHA:77293", "OMIM:607616", "CCRD:82.2", "CCRD:82.3", "OMIM:257220", "ORPHA:646", "OMIM:607625", "CCRD:82.1", "OMIM:257200"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000093", "HP:0001433", "HP:0001640", "HP:0001873", "HP:0001875", "HP:0001876", "HP:0001882", "HP:0001903", "HP:0001923", "HP:0001933", "HP:0001981", "HP:0002013", "HP:0002018", "HP:0002027", "HP:0002240", "HP:0002643", "HP:0002788", "HP:0002908", "HP:0003146", "HP:0003546", "HP:0003568", "HP:0003573", "HP:0003645", "HP:0004445", "HP:0008940", "HP:0011273", "HP:0011877", "HP:0012130", "HP:0012143", "HP:0012437", "HP:0031295"], "RareDisease": ["ORPHA:77293", "OMIM:607616", "CCRD:82.2", "CCRD:82.3", "OMIM:257220", "ORPHA:646", "OMIM:607625", "CCRD:82.1", "OMIM:257200"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000023", "HP:0000211", "HP:0001249", "HP:0001250", "HP:0001260", "HP:0001281", "HP:0001288", "HP:0001350", "HP:0001744", "HP:0001883", "HP:0002088", "HP:0002307", "HP:0002354", "HP:0002357", "HP:0002442", "HP:0002500", "HP:0007064", "HP:0007185", "HP:0011441", "HP:0430023"], "RareDisease": ["ORPHA:77293", "OMIM:607616", "CCRD:82.2", "CCRD:82.3", "OMIM:257220", "ORPHA:646", "OMIM:607625", "CCRD:82.1", "OMIM:257200"], "Department": "Hematology"}
-{"Phenotype": ["HP:0000823", "HP:0000952", "HP:0000978", "HP:0001433", "HP:0001633", "HP:0001635", "HP:0001640", "HP:0001646", "HP:0001653", "HP:0001698", "HP:0001712", "HP:0001744", "HP:0001873", "HP:0001875", "HP:0001876", "HP:0001882", "HP:0001903", "HP:0001945", "HP:0001948", "HP:0002092", "HP:0002249", "HP:0002875", "HP:0002900", "HP:0002908", "HP:0003073", "HP:0003270", "HP:0003324", "HP:0003546", "HP:0003573", "HP:0004325", "HP:0004406", "HP:0005201", "HP:0005213", "HP:0005619", "HP:0006530", "HP:0006559", "HP:0008151", "HP:0008897", "HP:0011037", "HP:0011103", "HP:0011900", "HP:0012251", "HP:0012531", "HP:0030872", "HP:0031185", "HP:0031245", "HP:0031295"], "RareDisease": ["ORPHA:77293", "OMIM:607616", "CCRD:82.2", "CCRD:82.3", "OMIM:257220", "ORPHA:646", "OMIM:607625", "CCRD:82.1", "OMIM:257200"], "Department": "Hematology"}

RDpatient_data/Public/HMS.jsonl

@@ -1,88 +0,0 @@
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-{"Phenotype": ["HP:0000793", "HP:0001974", "HP:0002205", "HP:0002633", "HP:0003496", "HP:0100778"], "RareDisease": ["OMIM:123550", "ORPHA:91138"], "Department": null}
-{"Phenotype": ["HP:0000155", "HP:0000246", "HP:0000360", "HP:0000365", "HP:0000572", "HP:0000651", "HP:0000787", "HP:0000790", "HP:0001097", "HP:0001155", "HP:0001279", "HP:0001369", "HP:0001880", "HP:0001947", "HP:0002018", "HP:0002027", "HP:0002150", "HP:0002315", "HP:0002321", "HP:0002653", "HP:0002875", "HP:0003236", "HP:0003326", "HP:0003401", "HP:0003418", "HP:0003474", "HP:0003537", "HP:0004411", "HP:0005197", "HP:0009763", "HP:0011935", "HP:0012378", "HP:0012595", "HP:0030140", "HP:0030833", "HP:0030836", "HP:0030840", "HP:0032154", "HP:0100749", "HP:0100827", "HP:0200034", "HP:0200039", "HP:0410019"], "RareDisease": ["OMIM:109650", "ORPHA:117"], "Department": null}
-{"Phenotype": ["HP:0000421", "HP:0002105", "HP:0002113", "HP:0002829", "HP:0002907", "HP:0011227", "HP:0012213", "HP:0032230"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000093", "HP:0001541", "HP:0001735", "HP:0001744", "HP:0001876", "HP:0001945", "HP:0002014", "HP:0002027", "HP:0002586", "HP:0002829", "HP:0003236", "HP:0003324", "HP:0003326", "HP:0003493", "HP:0003546", "HP:0011106", "HP:0012378", "HP:0025435", "HP:0030010", "HP:0410019"], "RareDisease": ["OMIM:152700", "OMIM:606579", "OMIM:609939", "OMIM:614420", "ORPHA:93552"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000093", "HP:0000099", "HP:0000107", "HP:0000554", "HP:0001369", "HP:0001888", "HP:0002204", "HP:0002625", "HP:0002907", "HP:0003225", "HP:0003493", "HP:0005584", "HP:0030839", "HP:0032376"], "RareDisease": ["OMIM:144700", "OMIM:152700", "OMIM:300854", "OMIM:605074", "OMIM:606579", "OMIM:609939", "OMIM:614420", "ORPHA:93552"], "Department": null}
-{"Phenotype": ["HP:0000089", "HP:0000107", "HP:0000217", "HP:0001407", "HP:0001785", "HP:0001962", "HP:0002015", "HP:0002018", "HP:0002020", "HP:0002027", "HP:0002036", "HP:0002110", "HP:0002321", "HP:0003138", "HP:0003165", "HP:0003236", "HP:0003259", "HP:0003418", "HP:0003565", "HP:0006682", "HP:0009098", "HP:0011227", "HP:0011897", "HP:0012213", "HP:0012378", "HP:0012387", "HP:0012514", "HP:0025179", "HP:0025392", "HP:0030057", "HP:0030830", "HP:0030877", "HP:0032017", "HP:0045051", "HP:0100643", "HP:0410019"], "RareDisease": ["OMIM:270150"], "Department": null}
-{"Phenotype": ["HP:0000271", "HP:0000975", "HP:0000980", "HP:0001279", "HP:0001824", "HP:0001974", "HP:0002013", "HP:0002018", "HP:0002315", "HP:0003546", "HP:0003565", "HP:0012378", "HP:0012531", "HP:0025143", "HP:0030164"], "RareDisease": ["OMIM:187360", "ORPHA:397"], "Department": null}
-{"Phenotype": ["HP:0000540", "HP:0000554", "HP:0001097", "HP:0001443", "HP:0002808", "HP:0002907", "HP:0003418", "HP:0005197", "HP:0100512"], "RareDisease": ["OMIM:106300", "OMIM:183840"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000366", "HP:0000989", "HP:0001639", "HP:0001644", "HP:0001698", "HP:0001712", "HP:0001945", "HP:0002094", "HP:0010876", "HP:0012213", "HP:0012378", "HP:0012664", "HP:0012735", "HP:0012819", "HP:0032017"], "RareDisease": ["OMIM:207600", "ORPHA:3287"], "Department": null}
-{"Phenotype": ["HP:0000012", "HP:0000246", "HP:0001649", "HP:0001945", "HP:0001974", "HP:0002105", "HP:0002202", "HP:0003115", "HP:0005110", "HP:0011227", "HP:0012735", "HP:0020181", "HP:0025392", "HP:0100534", "HP:0100749"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000217", "HP:0000633", "HP:0001167", "HP:0001225", "HP:0001760", "HP:0001935", "HP:0002076", "HP:0002815", "HP:0002829", "HP:0002923", "HP:0003212", "HP:0003237", "HP:0003326", "HP:0003394", "HP:0003493", "HP:0004386", "HP:0005197", "HP:0005263", "HP:0011911", "HP:0030836", "HP:0030839", "HP:0030840", "HP:0032235", "HP:0032308"], "RareDisease": ["OMIM:270150", "ORPHA:29207", "ORPHA:85408", "ORPHA:85414", "ORPHA:85435"], "Department": null}
-{"Phenotype": ["HP:0000097", "HP:0001065", "HP:0002149", "HP:0002155", "HP:0002907", "HP:0002910", "HP:0003073", "HP:0003124", "HP:0003138", "HP:0003149", "HP:0003565", "HP:0005413", "HP:0007390", "HP:0009741", "HP:0010783", "HP:0010931", "HP:0011227", "HP:0012213", "HP:0012595", "HP:0012611", "HP:0100515"], "RareDisease": ["OMIM:603278", "OMIM:603965", "OMIM:607832", "OMIM:612551", "OMIM:613237", "OMIM:614131", "OMIM:616002", "OMIM:616032", "OMIM:616220"], "Department": null}
-{"Phenotype": ["HP:0000155", "HP:0000246", "HP:0000433", "HP:0001894", "HP:0001945", "HP:0001974", "HP:0002094", "HP:0002815", "HP:0003155", "HP:0003565", "HP:0005413", "HP:0011227", "HP:0012219", "HP:0025289", "HP:0030948", "HP:0032118", "HP:0032154", "HP:0100721", "HP:0100749"], "RareDisease": ["OMIM:109650", "ORPHA:117"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000099", "HP:0000246", "HP:0000366", "HP:0000509", "HP:0001945", "HP:0002105", "HP:0003546", "HP:0012735", "HP:0030834", "HP:0030835", "HP:0030839", "HP:0040223", "HP:0100520"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000107", "HP:0000572", "HP:0000822", "HP:0000979", "HP:0001397", "HP:0001407", "HP:0001970", "HP:0002018", "HP:0002088", "HP:0002094", "HP:0002315", "HP:0002907", "HP:0009741", "HP:0012085", "HP:0012378", "HP:0012398", "HP:0012461", "HP:0012594", "HP:0012735", "HP:0031812", "HP:0100721"], "RareDisease": ["OMIM:181000", "OMIM:612387", "ORPHA:797"], "Department": null}
-{"Phenotype": ["HP:0000100", "HP:0000366", "HP:0000790", "HP:0000793", "HP:0000979", "HP:0001225", "HP:0002094", "HP:0002155", "HP:0003124", "HP:0004324", "HP:0010741", "HP:0012398", "HP:0012596", "HP:0012597", "HP:0031504"], "RareDisease": ["ORPHA:761"], "Department": null}
-{"Phenotype": ["HP:0000164", "HP:0001596", "HP:0002659", "HP:0003282", "HP:0004322", "HP:0005268", "HP:0012378", "HP:0012514", "HP:0031456"], "RareDisease": ["CCRD:50", "OMIM:146300", "ORPHA:436"], "Department": null}
-{"Phenotype": ["HP:0000265", "HP:0000365", "HP:0000666", "HP:0000858", "HP:0001649", "HP:0001785", "HP:0001824", "HP:0001962", "HP:0002321", "HP:0005421", "HP:0010628", "HP:0030057", "HP:0045042", "HP:0200097"], "RareDisease": ["OMIM:181000", "OMIM:612387", "ORPHA:797"], "Department": null}
-{"Phenotype": ["HP:0000246", "HP:0000520", "HP:0000651", "HP:0000822", "HP:0001144", "HP:0001653", "HP:0001659", "HP:0001712", "HP:0002155", "HP:0002240", "HP:0002896", "HP:0003124", "HP:0005180", "HP:0012213", "HP:0012246", "HP:0032300", "HP:0100540"], "RareDisease": ["CCRD:56", "OMIM:228800", "ORPHA:49041"], "Department": null}
-{"Phenotype": ["HP:0000365", "HP:0001649", "HP:0001744", "HP:0001945", "HP:0002153", "HP:0002321", "HP:0002850", "HP:0003072", "HP:0003115", "HP:0003565", "HP:0005339", "HP:0011227", "HP:0011788", "HP:0025238", "HP:0030835", "HP:0030836", "HP:0030838", "HP:0030839"], "RareDisease": ["OMIM:120100", "OMIM:191900", "OMIM:607115", "OMIM:611762", "OMIM:614468", "OMIM:616115", "ORPHA:1451", "ORPHA:47045", "ORPHA:575"], "Department": null}
-{"Phenotype": ["HP:0000010", "HP:0000230", "HP:0000282", "HP:0000421", "HP:0000975", "HP:0001600", "HP:0001824", "HP:0001880", "HP:0001935", "HP:0002105", "HP:0002113", "HP:0002153", "HP:0002875", "HP:0003546", "HP:0008221", "HP:0010287", "HP:0010628", "HP:0011227", "HP:0012378", "HP:0012398", "HP:0025289", "HP:0025392", "HP:0030001", "HP:0030835", "HP:0030839", "HP:0031098", "HP:0031292", "HP:0032230", "HP:0100631"], "RareDisease": ["OMIM:181000", "OMIM:612387", "ORPHA:797"], "Department": null}
-{"Phenotype": ["HP:0000036", "HP:0000155", "HP:0000421", "HP:0000554", "HP:0000572", "HP:0000790", "HP:0000822", "HP:0001369", "HP:0001785", "HP:0002027", "HP:0002380", "HP:0002829", "HP:0002910", "HP:0002922", "HP:0003236", "HP:0003259", "HP:0003326", "HP:0003394", "HP:0003416", "HP:0003418", "HP:0003474", "HP:0007042", "HP:0009027", "HP:0010280", "HP:0011911", "HP:0012378", "HP:0012534", "HP:0025435", "HP:0030948", "HP:0032101", "HP:0032154", "HP:0100518", "HP:0410019"], "RareDisease": ["OMIM:109650", "ORPHA:117"], "Department": null}
-{"Phenotype": ["HP:0000989", "HP:0001649", "HP:0001785", "HP:0001824", "HP:0001888", "HP:0001903", "HP:0001945", "HP:0001974", "HP:0002815", "HP:0003073", "HP:0003115", "HP:0003236", "HP:0003326", "HP:0003458", "HP:0003493", "HP:0003546", "HP:0003565", "HP:0005197", "HP:0005413", "HP:0006163", "HP:0010783", "HP:0011227", "HP:0011897", "HP:0012514", "HP:0012735", "HP:0025131", "HP:0030167", "HP:0032232", "HP:0100614", "HP:0100643", "HP:0410174"], "RareDisease": ["ORPHA:81"], "Department": null}
-{"Phenotype": ["HP:0000961", "HP:0001397", "HP:0001880", "HP:0002113", "HP:0002716", "HP:0002910", "HP:0003124", "HP:0003165", "HP:0003212", "HP:0011799", "HP:0030057", "HP:0030948"], "RareDisease": ["ORPHA:482"], "Department": null}
-{"Phenotype": ["HP:0000246", "HP:0001880", "HP:0002094", "HP:0002113", "HP:0003212", "HP:0025392", "HP:0030057", "HP:0100582"], "RareDisease": ["ORPHA:183"], "Department": null}
-{"Phenotype": ["HP:0000155", "HP:0000853", "HP:0001369", "HP:0001600", "HP:0001903", "HP:0001962", "HP:0002020", "HP:0002315", "HP:0002380", "HP:0002385", "HP:0002815", "HP:0002829", "HP:0003326", "HP:0003445", "HP:0003474", "HP:0003493", "HP:0005421", "HP:0006261", "HP:0010876", "HP:0011712", "HP:0011717", "HP:0011911", "HP:0012513", "HP:0012534", "HP:0030833", "HP:0030835", "HP:0030837", "HP:0030839", "HP:0031731", "HP:0032154", "HP:0100643", "HP:0410281"], "RareDisease": ["ORPHA:81"], "Department": null}
-{"Phenotype": ["HP:0000245", "HP:0000421", "HP:0000433", "HP:0002105", "HP:0025095", "HP:0030835", "HP:0030839", "HP:0030840"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0001397", "HP:0001945", "HP:0001974", "HP:0002020", "HP:0002240", "HP:0002896", "HP:0002910", "HP:0003418", "HP:0003546", "HP:0005165", "HP:0005197", "HP:0008775", "HP:0011227", "HP:0012317", "HP:0012378", "HP:0030830", "HP:0030835", "HP:0030839", "HP:0030948", "HP:0031352", "HP:0045051", "HP:0045073", "HP:0100749", "HP:0200041"], "RareDisease": ["OMIM:106300", "OMIM:183840"], "Department": null}
-{"Phenotype": ["HP:0001974", "HP:0002754", "HP:0003565", "HP:0011227", "HP:0030793", "HP:0040264", "HP:0100774", "HP:0100847"], "RareDisease": ["ORPHA:793"], "Department": null}
-{"Phenotype": ["HP:0002814", "HP:0002907", "HP:0003236", "HP:0003401", "HP:0003565", "HP:0008151", "HP:0011227", "HP:0012733", "HP:0045042", "HP:0200041"], "RareDisease": ["OMIM:615688", "ORPHA:767"], "Department": null}
-{"Phenotype": ["HP:0001824", "HP:0001882", "HP:0002094", "HP:0002321", "HP:0003236", "HP:0003546", "HP:0025179", "HP:0025238", "HP:0030057", "HP:0045051"], "RareDisease": ["ORPHA:81"], "Department": null}
-{"Phenotype": ["HP:0000072", "HP:0001744", "HP:0003259", "HP:0004942", "HP:0005200", "HP:0008714", "HP:0011227", "HP:0030150", "HP:0030423", "HP:0032300", "HP:0100581"], "RareDisease": ["ORPHA:49041"], "Department": null}
-{"Phenotype": ["HP:0000017", "HP:0001600", "HP:0001824", "HP:0001873", "HP:0001903", "HP:0001945", "HP:0001974", "HP:0002315", "HP:0002923", "HP:0003165", "HP:0003262", "HP:0003326", "HP:0005339", "HP:0010931", "HP:0011227", "HP:0012213", "HP:0012514", "HP:0012664", "HP:0030155", "HP:0030166", "HP:0030948", "HP:0031520", "HP:0032300", "HP:0100512", "HP:0100614"], "RareDisease": ["ORPHA:732"], "Department": null}
-{"Phenotype": ["HP:0000010", "HP:0001155", "HP:0001225", "HP:0001443", "HP:0001882", "HP:0001935", "HP:0001943", "HP:0002315", "HP:0002321", "HP:0003401", "HP:0003416", "HP:0003418", "HP:0003474", "HP:0003565", "HP:0005197", "HP:0005421", "HP:0006979", "HP:0011227", "HP:0012317", "HP:0012513", "HP:0025230", "HP:0030834", "HP:0030836", "HP:0030839", "HP:0031185", "HP:0100686"], "RareDisease": ["OMIM:106300", "OMIM:183840"], "Department": null}
-{"Phenotype": ["HP:0000103", "HP:0001061", "HP:0001959", "HP:0002315", "HP:0002815", "HP:0002829", "HP:0003236", "HP:0005197", "HP:0011911", "HP:0012378", "HP:0025238", "HP:0030835", "HP:0030836", "HP:0030839", "HP:0030841", "HP:0032300"], "RareDisease": ["CCRD:28", "OMIM:134610", "OMIM:249100", "ORPHA:29207", "ORPHA:342", "ORPHA:85408", "ORPHA:85414", "ORPHA:85435"], "Department": null}
-{"Phenotype": ["HP:0000155", "HP:0000651", "HP:0001167", "HP:0001279", "HP:0001369", "HP:0001945", "HP:0001974", "HP:0002315", "HP:0002907", "HP:0003043", "HP:0003249", "HP:0003326", "HP:0003401", "HP:0003418", "HP:0003474", "HP:0003546", "HP:0003565", "HP:0005413", "HP:0011227", "HP:0011706", "HP:0012378", "HP:0012574", "HP:0012595", "HP:0030837", "HP:0032154", "HP:0032308"], "RareDisease": ["CCRD:28", "OMIM:109650", "OMIM:134610", "OMIM:249100", "ORPHA:117", "ORPHA:342"], "Department": null}
-{"Phenotype": ["HP:0000365", "HP:0000421", "HP:0001288", "HP:0001945", "HP:0003326", "HP:0011227", "HP:0012378", "HP:0012514", "HP:0030766", "HP:0032230"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000093", "HP:0000099", "HP:0000141", "HP:0000790", "HP:0001369", "HP:0001744", "HP:0001935", "HP:0002015", "HP:0002094", "HP:0002240", "HP:0003493", "HP:0003645", "HP:0004326", "HP:0012213", "HP:0012398", "HP:0031504", "HP:0032235", "HP:0045073", "HP:0100643"], "RareDisease": ["OMIM:152700", "OMIM:606579", "OMIM:609939", "OMIM:614420", "ORPHA:809", "ORPHA:93552"], "Department": null}
-{"Phenotype": ["HP:0000103", "HP:0000572", "HP:0000790", "HP:0000958", "HP:0001097", "HP:0001337", "HP:0002014", "HP:0002019", "HP:0002046", "HP:0002076", "HP:0002875", "HP:0003326", "HP:0003546", "HP:0011123", "HP:0012378", "HP:0012735", "HP:0030972", "HP:0032300", "HP:0410281"], "RareDisease": ["CCRD:56", "OMIM:228800", "ORPHA:49041"], "Department": null}
-{"Phenotype": ["HP:0000246", "HP:0000366", "HP:0000388", "HP:0001945", "HP:0002315", "HP:0003546", "HP:0030835", "HP:0030839"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000772", "HP:0000939", "HP:0002650", "HP:0002829", "HP:0003124", "HP:0003282", "HP:0003326", "HP:0003394", "HP:0003418", "HP:0003493", "HP:0008422", "HP:0012184", "HP:0030839", "HP:0030840"], "RareDisease": ["CCRD:50", "OMIM:146300", "ORPHA:436"], "Department": null}
-{"Phenotype": ["HP:0000089", "HP:0000097", "HP:0000121", "HP:0001397", "HP:0001407", "HP:0001744", "HP:0001873", "HP:0002014", "HP:0002149", "HP:0002153", "HP:0003043", "HP:0003138", "HP:0003149", "HP:0003165", "HP:0003259", "HP:0003281", "HP:0003493", "HP:0003565", "HP:0005339", "HP:0012185", "HP:0012213", "HP:0012513", "HP:0012514", "HP:0012611", "HP:0020181", "HP:0025020", "HP:0030833", "HP:0030834", "HP:0030873", "HP:0100529"], "RareDisease": ["OMIM:181750", "ORPHA:90290"], "Department": null}
-{"Phenotype": ["HP:0000246", "HP:0000433", "HP:0000822", "HP:0000853", "HP:0001653", "HP:0001785", "HP:0001824", "HP:0001945", "HP:0002875", "HP:0003324", "HP:0003493", "HP:0003546", "HP:0004930", "HP:0010741", "HP:0011227", "HP:0012378", "HP:0012398", "HP:0012735", "HP:0025179", "HP:0030166", "HP:0030839", "HP:0030841", "HP:0031394", "HP:0100827"], "RareDisease": ["ORPHA:81"], "Department": null}
-{"Phenotype": ["HP:0001025", "HP:0001369", "HP:0001945", "HP:0003115", "HP:0005115", "HP:0008619", "HP:0011227", "HP:0025269", "HP:0030839"], "RareDisease": ["OMIM:120100", "OMIM:142680", "OMIM:191900", "OMIM:607115", "OMIM:611762", "OMIM:614468", "OMIM:616115", "ORPHA:1451", "ORPHA:32960", "ORPHA:47045", "ORPHA:575"], "Department": null}
-{"Phenotype": ["HP:0001063", "HP:0001780", "HP:0001945", "HP:0002240", "HP:0002625", "HP:0002633", "HP:0003419", "HP:0004326", "HP:0004420", "HP:0008940", "HP:0009098", "HP:0010287", "HP:0010783", "HP:0012378", "HP:0012398", "HP:0025203", "HP:0025238", "HP:0030242", "HP:0100758"], "RareDisease": ["OMIM:211480", "OMIM:615688", "ORPHA:36258", "ORPHA:767"], "Department": null}
-{"Phenotype": ["HP:0000421", "HP:0001824", "HP:0002076", "HP:0002321", "HP:0002633", "HP:0003326", "HP:0003546", "HP:0003565", "HP:0030766", "HP:0030833", "HP:0100546"], "RareDisease": ["OMIM:207600", "ORPHA:3287"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000155", "HP:0000366", "HP:0000377", "HP:0000766", "HP:0001041", "HP:0001635", "HP:0001649", "HP:0001659", "HP:0001962", "HP:0002149", "HP:0002202", "HP:0002716", "HP:0002907", "HP:0003149", "HP:0003326", "HP:0003418", "HP:0003546", "HP:0003565", "HP:0011227", "HP:0011713", "HP:0011911", "HP:0012317", "HP:0012378", "HP:0012611", "HP:0025238", "HP:0030835", "HP:0030840", "HP:0032154", "HP:0100686"], "RareDisease": ["ORPHA:728"], "Department": null}
-{"Phenotype": ["HP:0001138", "HP:0002910", "HP:0003124", "HP:0003141", "HP:0007042", "HP:0007663", "HP:0012756", "HP:0025343", "HP:0030833", "HP:0030948", "HP:0200149"], "RareDisease": ["OMIM:107320"], "Department": null}
-{"Phenotype": ["HP:0001824", "HP:0002829", "HP:0003259", "HP:0003493", "HP:0003546", "HP:0012378", "HP:0012452", "HP:0100643"], "RareDisease": ["CCRD:112", "OMIM:181750", "ORPHA:220393", "ORPHA:220402", "ORPHA:90290", "ORPHA:90291"], "Department": null}
-{"Phenotype": ["HP:0000083", "HP:0000093", "HP:0000100", "HP:0000790", "HP:0000793", "HP:0000822", "HP:0000979", "HP:0001744", "HP:0001785", "HP:0001942", "HP:0002018", "HP:0002027", "HP:0002094", "HP:0002101", "HP:0002113", "HP:0002202", "HP:0002315", "HP:0003073", "HP:0003259", "HP:0003546", "HP:0004315", "HP:0004930", "HP:0005421", "HP:0008940", "HP:0011227", "HP:0025346", "HP:0030840", "HP:0031185", "HP:0032177", "HP:0045042", "HP:0100778"], "RareDisease": ["OMIM:123550", "ORPHA:91138"], "Department": null}
-{"Phenotype": ["HP:0000388", "HP:0000961", "HP:0001698", "HP:0001780", "HP:0002202", "HP:0002829", "HP:0009830", "HP:0011025", "HP:0100758"], "RareDisease": ["OMIM:608710", "ORPHA:900"], "Department": null}
-{"Phenotype": ["HP:0000821", "HP:0000989", "HP:0001081", "HP:0001575", "HP:0001644", "HP:0001662", "HP:0001735", "HP:0001824", "HP:0001972", "HP:0001974", "HP:0002018", "HP:0002371", "HP:0002546", "HP:0002633", "HP:0002870", "HP:0002925", "HP:0003115", "HP:0003165", "HP:0003493", "HP:0003565", "HP:0011227", "HP:0011709", "HP:0030948", "HP:0031588", "HP:0032210", "HP:0032229", "HP:0032300", "HP:0100546", "HP:0100646"], "RareDisease": ["CCRD:56", "OMIM:228800", "ORPHA:49041"], "Department": null}
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-{"Phenotype": ["HP:0000217", "HP:0000505", "HP:0001824", "HP:0001945", "HP:0002907", "HP:0002910", "HP:0003418", "HP:0003546", "HP:0003565", "HP:0004396", "HP:0010783", "HP:0011227", "HP:0011801", "HP:0012122", "HP:0012577", "HP:0012595", "HP:0025289", "HP:0030166", "HP:0200026"], "RareDisease": ["OMIM:181000", "OMIM:612387", "ORPHA:797"], "Department": null}
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RDpatient_data/Public/MME.jsonl

@@ -1,40 +0,0 @@
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-{"Phenotype": ["HP:0000175", "HP:0000201", "HP:0000204", "HP:0002098", "HP:0002650", "HP:0030282", "HP:0030300"], "RareDisease": ["OMIM:117650", "ORPHA:1393"], "Department": null}
-{"Phenotype": ["HP:0000201", "HP:0000405", "HP:0000486", "HP:0000540", "HP:0001631", "HP:0002098", "HP:0002650", "HP:0011968", "HP:0030282"], "RareDisease": ["OMIM:117650", "ORPHA:1393"], "Department": null}
-{"Phenotype": ["HP:0000175", "HP:0000201", "HP:0000405", "HP:0000878", "HP:0000883", "HP:0002650", "HP:0030282"], "RareDisease": ["OMIM:117650", "ORPHA:1393"], "Department": null}
-{"Phenotype": ["HP:0000160", "HP:0000272", "HP:0000286", "HP:0000337", "HP:0000639", "HP:0001250", "HP:0003196", "HP:0009765", "HP:0011344", "HP:0011347"], "RareDisease": ["OMIM:245570"], "Department": null}
-{"Phenotype": ["HP:0000926", "HP:0001230", "HP:0001999", "HP:0002104", "HP:0002866", "HP:0003025", "HP:0003180", "HP:0005257", "HP:0006009", "HP:0008416", "HP:0008905", "HP:0010049", "HP:0011675", "HP:0030306"], "RareDisease": ["OMIM:250220", "ORPHA:93317"], "Department": null}
-{"Phenotype": ["HP:0000926", "HP:0000946", "HP:0001248", "HP:0001290", "HP:0001321", "HP:0001678", "HP:0002079", "HP:0002098", "HP:0002123", "HP:0003180", "HP:0003375", "HP:0004273", "HP:0005108", "HP:0009879", "HP:0100255"], "RareDisease": ["OMIM:250220", "ORPHA:93317"], "Department": null}
-{"Phenotype": ["HP:0000495", "HP:0000522", "HP:0001250", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001395", "HP:0001773", "HP:0002019", "HP:0002171", "HP:0002353", "HP:0002910", "HP:0006254", "HP:0006579", "HP:0009830", "HP:0010605", "HP:0012520", "HP:0200055"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000495", "HP:0000522", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001511", "HP:0002019", "HP:0002151", "HP:0002353", "HP:0002650", "HP:0002910", "HP:0009830"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000486", "HP:0000495", "HP:0000522", "HP:0001250", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001395", "HP:0001511", "HP:0001773", "HP:0002019", "HP:0002151", "HP:0002171", "HP:0002353", "HP:0002650", "HP:0002910", "HP:0006254", "HP:0006579", "HP:0006958", "HP:0010605", "HP:0012448", "HP:0012520", "HP:0200055"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000218", "HP:0000252", "HP:0000286", "HP:0000347", "HP:0000508", "HP:0000522", "HP:0001250", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001511", "HP:0001773", "HP:0002019", "HP:0002119", "HP:0002151", "HP:0002353", "HP:0002418", "HP:0002650", "HP:0003196", "HP:0006254", "HP:0006579", "HP:0009085", "HP:0009830", "HP:0009891", "HP:0200055"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000286", "HP:0001252", "HP:0001263", "HP:0001395", "HP:0001511", "HP:0002353", "HP:0003196", "HP:0006579", "HP:0006956", "HP:0100022"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000286", "HP:0000486", "HP:0000522", "HP:0000657", "HP:0001182", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001864", "HP:0002007", "HP:0002019", "HP:0002557", "HP:0002910", "HP:0005487", "HP:0006579", "HP:0010605", "HP:0010804", "HP:0011918"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000431", "HP:0000486", "HP:0000495", "HP:0000520", "HP:0000522", "HP:0000657", "HP:0000678", "HP:0001250", "HP:0001252", "HP:0001263", "HP:0001315", "HP:0001511", "HP:0001773", "HP:0002019", "HP:0002353", "HP:0002553", "HP:0002650", "HP:0005320", "HP:0200055"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000718", "HP:0001250", "HP:0010864"], "RareDisease": ["OMIM:604317", "ORPHA:2512"], "Department": null}
-{"Phenotype": ["HP:0000639", "HP:0000648", "HP:0001252", "HP:0001254", "HP:0001260", "HP:0002066", "HP:0002370", "HP:0007965", "HP:0008619"], "RareDisease": ["OMIM:601338", "ORPHA:1171"], "Department": null}
-{"Phenotype": ["HP:0000218", "HP:0000278", "HP:0000316", "HP:0000319", "HP:0000347", "HP:0000369", "HP:0000494", "HP:0000768", "HP:0001166", "HP:0001265", "HP:0001363", "HP:0001388", "HP:0001537", "HP:0001655", "HP:0001762", "HP:0001763", "HP:0002151", "HP:0002410", "HP:0002474", "HP:0002868", "HP:0003298", "HP:0003396", "HP:0006801", "HP:0006889", "HP:0010665", "HP:0011220"], "RareDisease": ["OMIM:182212", "ORPHA:2462"], "Department": null}
-{"Phenotype": ["HP:0000218", "HP:0000286", "HP:0000316", "HP:0000322", "HP:0000348", "HP:0000463", "HP:0000954", "HP:0001252", "HP:0001263", "HP:0001344", "HP:0002007", "HP:0002079", "HP:0002282", "HP:0002912", "HP:0003196", "HP:0006956", "HP:0007793", "HP:0008070", "HP:0010055", "HP:0010804", "HP:0012120", "HP:0012448", "HP:0040155", "HP:0045034"], "RareDisease": ["OMIM:614105"], "Department": null}
-{"Phenotype": ["HP:0000325", "HP:0000430", "HP:0000490", "HP:0000558", "HP:0000684", "HP:0004322", "HP:0007495", "HP:0009125"], "RareDisease": ["OMIM:269880", "ORPHA:3163"], "Department": null}
-{"Phenotype": ["HP:0000085", "HP:0000179", "HP:0000215", "HP:0000252", "HP:0000348", "HP:0000490", "HP:0000545", "HP:0000582", "HP:0000670", "HP:0000689", "HP:0001643", "HP:0002342", "HP:0003189", "HP:0009765", "HP:0009890", "HP:0012745"], "RareDisease": ["OMIM:613680"], "Department": null}
-{"Phenotype": ["HP:0000010", "HP:0000230", "HP:0000403", "HP:0001744", "HP:0001875", "HP:0001888", "HP:0004854", "HP:0004866", "HP:0005401", "HP:0012138"], "RareDisease": ["OMIM:612541", "CCRD:104"], "Department": null}
-{"Phenotype": ["HP:0001539", "HP:0005214", "HP:0011100"], "RareDisease": ["OMIM:243150", "ORPHA:436252"], "Department": null}
-{"Phenotype": ["HP:0000252", "HP:0000486", "HP:0000522", "HP:0000657", "HP:0001252", "HP:0001263", "HP:0001395", "HP:0001773", "HP:0002019", "HP:0002059", "HP:0002079", "HP:0002151", "HP:0002353", "HP:0002472", "HP:0002910", "HP:0006579", "HP:0006958", "HP:0010605", "HP:0030303", "HP:0100022", "HP:0200055"], "RareDisease": ["OMIM:615273", "ORPHA:404454"], "Department": null}

README.md

@@ -1,11 +1,6 @@
 ---
 configs:
 - config_name: default
-  data_files:
-  - split: test
-    path:
-    - RDpatient_data/Public/*.jsonl
-    - RDpatient_data/PUMCH/*.jsonl
 license: apache-2.0
 task_categories:
 - question-answering
@@ -23,7 +18,9 @@ size_categories:
 
 This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
 
-Github Repo for RareBench: https://github.com/chenxz1111/RareBench Arxiv Paper for RareBench: https://arxiv.org/pdf/2402.06341.pdf
+Github Repo for RareBench: https://github.com/chenxz1111/RareBench 
+
+Arxiv Paper for RareBench: https://arxiv.org/pdf/2402.06341.pdf
 
 ## Dataset Details
 

RareBench.py

@@ -0,0 +1,89 @@
+# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import csv
+import json
+import os
+
+import datasets
+
+
+_DESCRIPTION = """\
+RareBench is a pioneering benchmark designed to systematically evaluate the capabilities of LLMs within the realm of rare diseases.
+"""
+
+_HOMEPAGE = "https://github.com/chenxz1111/RareBench"
+
+_URL = r"https://huggingface.co/datasets/chenxz/RareBench/resolve/main/data.zip"
+
+data_list = [
+    "RAMEDIS",
+    "HMS",
+    "MME",
+    "LIRICAL",
+    "PUMCH_ADM"
+]
+
+class RareBenchConfig(datasets.BuilderConfig):
+    def __init__(self, **kwargs):
+        super().__init__(version=datasets.Version("1.1.0"), **kwargs)
+
+
+class RareBench(datasets.GeneratorBasedBuilder):
+    BUILDER_CONFIGS = [
+        RareBenchConfig(
+            name=data_name,
+        )
+        for data_name in data_list
+    ]
+    
+    def _info(self):
+        features = datasets.Features(
+            {
+                "Phenotype": [datasets.Value("string")], 
+                "RareDisease": [datasets.Value("string")],
+                "Department": datasets.Value("string"), 
+            }
+        )
+        return datasets.DatasetInfo(
+            description=_DESCRIPTION,
+            features=features,
+            homepage=_HOMEPAGE,
+        )
+
+    def _split_generators(self, dl_manager):
+        data_dir = dl_manager.download_and_extract(_URL)
+        data_name = self.config.name
+        return [
+            datasets.SplitGenerator(
+                name=datasets.Split.TEST,
+                gen_kwargs={
+                    "filepath": os.path.join(
+                        data_dir, "data", f"{data_name}.jsonl"
+                    ),
+                },
+            )
+        ]
+
+    def _generate_examples(self, filepath):
+        with open(filepath, encoding="utf-8-sig") as f:
+            for idx, line in enumerate(f):
+                key = f"{self.config.name}-{idx}"
+                item = json.loads(line)
+                yield key, {
+                    "Phenotype": item["Phenotype"],
+                    "RareDisease": item["RareDisease"],
+                    "Department": item["Department"],
+                }