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chenxz commited on
Commit
97b8e62
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1 Parent(s): 9073ab0

jsonl test

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Files changed (6) hide show
  1. RDpatient_data/PUMCH/PUMCH_ADM.jsonl +2 -0
  2. RDpatient_data/Public/HMS.json +0 -2493
  3. RDpatient_data/Public/LIRICAL.json +0 -0
  4. RDpatient_data/Public/MME.json +0 -797
  5. RDpatient_data/Public/RAMEDIS.json +0 -0
  6. README.md +20 -4
RDpatient_data/PUMCH/PUMCH_ADM.jsonl ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ {"Phenotype": ["HP:0000722", "HP:0000750", "HP:0001319", "HP:0001350", "HP:0001530", "HP:0001558", "HP:0001612", "HP:0002033", "HP:0002577", "HP:0004324", "HP:0011951", "HP:0030748", "HP:0040217"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"]}
2
+ {"Phenotype": ["HP:0000028", "HP:0000670", "HP:0001262", "HP:0001618", "HP:0008947", "HP:0011968", "HP:0012420"], "RareDisease": ["CCRD:93", "OMIM:176270", "ORPHA:739"]}
RDpatient_data/Public/HMS.json DELETED
@@ -1,2493 +0,0 @@
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673
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674
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676
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677
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678
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679
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680
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681
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682
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683
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684
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685
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686
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687
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689
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691
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692
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693
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694
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695
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696
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697
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698
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699
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700
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701
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703
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704
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705
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707
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708
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709
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710
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711
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712
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713
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714
- ]
715
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716
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717
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718
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719
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720
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721
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722
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723
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724
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725
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726
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727
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728
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730
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731
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733
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734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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746
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748
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749
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750
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751
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752
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753
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754
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756
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757
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759
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760
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761
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762
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763
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764
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765
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768
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769
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770
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772
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773
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774
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775
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776
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777
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778
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780
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781
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782
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783
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784
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785
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786
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787
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788
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789
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790
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791
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792
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793
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794
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795
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796
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797
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800
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801
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802
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804
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805
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806
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807
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808
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809
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810
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811
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812
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813
- ],
814
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815
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816
- ]
817
- ],
818
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819
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820
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821
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822
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823
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824
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825
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826
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827
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828
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829
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830
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831
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832
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833
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834
- ]
835
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836
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837
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838
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839
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840
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841
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842
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843
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844
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845
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846
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847
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848
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849
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850
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851
- ]
852
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855
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856
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857
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858
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859
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860
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861
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862
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863
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864
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865
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866
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867
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868
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869
- ]
870
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872
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873
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875
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876
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877
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878
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879
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880
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881
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882
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883
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884
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886
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887
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888
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889
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890
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891
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892
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897
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898
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900
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901
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902
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904
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905
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906
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907
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908
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909
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910
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911
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912
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913
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915
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916
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917
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918
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919
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920
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921
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922
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923
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924
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925
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926
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927
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928
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929
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930
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931
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932
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933
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934
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935
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936
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937
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938
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941
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942
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943
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944
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947
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948
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949
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950
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951
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952
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953
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954
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955
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956
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958
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959
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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972
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973
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974
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975
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976
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977
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978
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979
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980
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981
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982
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983
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984
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985
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986
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987
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988
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989
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990
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991
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992
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993
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994
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995
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998
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999
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1000
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1001
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1002
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1003
- ]
1004
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1005
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1006
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1007
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1008
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1009
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1010
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1011
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1012
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1013
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1014
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1015
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1016
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1017
- ],
1018
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1019
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1020
- "ORPHA:900"
1021
- ]
1022
- ],
1023
- [
1024
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1025
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1026
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1027
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1028
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1029
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1030
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1031
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1032
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1033
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1034
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1035
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1036
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1037
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1038
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1039
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1040
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1041
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1042
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1043
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1044
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1045
- ],
1046
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1047
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1048
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1049
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1050
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1051
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1052
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1053
- ]
1054
- ],
1055
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1056
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1057
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1058
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1059
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1060
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1061
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1062
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1063
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1064
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1065
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1066
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1067
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1068
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1069
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1070
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1071
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1072
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1073
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1074
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1075
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1076
- ],
1077
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1078
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1079
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1080
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1081
- ]
1082
- ],
1083
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1084
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1085
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1086
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1087
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1088
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1089
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1090
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1091
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1092
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1093
- ],
1094
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1095
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1096
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1097
- ]
1098
- ],
1099
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1100
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1101
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1102
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1103
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1104
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1105
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1106
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1107
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1108
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1109
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1110
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1111
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1112
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1113
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1114
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1115
- ],
1116
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1117
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1118
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1119
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1120
- ]
1121
- ],
1122
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1123
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1124
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1125
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1126
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1127
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1128
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1129
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1130
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1131
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1132
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1133
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1134
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1135
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1136
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1137
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1138
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1139
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1140
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1141
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1142
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1143
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1144
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1145
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1146
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1147
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1148
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1149
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1150
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1151
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1152
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1153
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1154
- ],
1155
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1156
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1157
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1158
- ]
1159
- ],
1160
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1161
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1162
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1163
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1164
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1165
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1166
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1167
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1168
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1169
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1170
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1171
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1172
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1173
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1174
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1175
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1176
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1177
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1178
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1179
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1180
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1181
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1182
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1183
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1184
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1185
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1186
- ],
1187
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1188
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1189
- ]
1190
- ],
1191
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1192
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1193
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1194
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1195
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1196
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1197
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1198
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1199
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1200
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1201
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1202
- ],
1203
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1204
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1205
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1206
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1207
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1208
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1209
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1210
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1211
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1212
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1213
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1214
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1215
- ]
1216
- ],
1217
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1218
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1219
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1220
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1221
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1222
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1223
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1224
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1225
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1226
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1227
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1228
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1229
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1230
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1231
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1232
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1233
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1234
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1235
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1236
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1237
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1238
- ],
1239
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1240
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1241
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1242
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1243
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1244
- ]
1245
- ],
1246
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1247
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1248
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1249
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1250
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1251
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1252
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1253
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1254
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1255
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1256
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1257
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1258
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1259
- ],
1260
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1261
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1262
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1263
- ]
1264
- ],
1265
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1266
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1267
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1268
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1269
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1270
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1271
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1272
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1273
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1274
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1275
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1276
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1277
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1278
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1279
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1280
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1281
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1282
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1283
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1284
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1285
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1286
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1287
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1288
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1289
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1290
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1291
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1292
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1293
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1294
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1295
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1296
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1297
- ],
1298
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1299
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1300
- ]
1301
- ],
1302
- [
1303
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1304
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1305
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1306
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1307
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1308
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1309
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1310
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1311
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1312
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1313
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1314
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1315
- ],
1316
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1317
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1318
- ]
1319
- ],
1320
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1321
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1322
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1323
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1324
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1325
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1326
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1327
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1328
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1329
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1330
- ],
1331
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1332
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1333
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1334
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1335
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1336
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1337
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1338
- ]
1339
- ],
1340
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1341
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1342
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1343
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1344
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1345
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1346
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1347
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1348
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1349
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1350
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1351
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1352
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1353
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1354
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1355
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1357
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1358
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1360
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1361
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1363
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1364
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1365
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1366
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1367
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1368
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1369
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1370
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1371
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1372
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1373
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1374
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1375
- "OMIM:123550",
1376
- "ORPHA:91138"
1377
- ]
1378
- ],
1379
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1380
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1381
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1382
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1383
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1384
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1385
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1386
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1387
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1388
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1389
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1390
- ],
1391
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1392
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1393
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1394
- ]
1395
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1396
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1397
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1398
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1399
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1400
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1401
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1402
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1403
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1404
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1405
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1406
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1407
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1408
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1409
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1410
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1411
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1412
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1413
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1414
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1415
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1416
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1417
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1418
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1419
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1420
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1421
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1422
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1423
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1424
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1425
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1426
- "HP:0100646"
1427
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1428
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1429
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1430
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1431
- "ORPHA:49041"
1432
- ]
1433
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1434
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1435
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1436
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1437
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1438
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1439
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1440
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1441
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1442
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1443
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1444
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1445
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1446
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1447
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1448
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1449
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1450
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1451
- "HP:0200041"
1452
- ],
1453
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1454
- "OMIM:123550",
1455
- "ORPHA:91138"
1456
- ]
1457
- ],
1458
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1459
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1460
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1461
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1462
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1463
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1464
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1465
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1466
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1467
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1468
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1469
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1470
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1471
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1472
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1473
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1474
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1475
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1476
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1477
- "HP:0030167",
1478
- "HP:0045042",
1479
- "HP:0100643",
1480
- "HP:0100778"
1481
- ],
1482
- [
1483
- "OMIM:123550",
1484
- "ORPHA:91138"
1485
- ]
1486
- ],
1487
- [
1488
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1489
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1490
- "HP:0000509",
1491
- "HP:0001701",
1492
- "HP:0001744",
1493
- "HP:0001824",
1494
- "HP:0001945",
1495
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1496
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1497
- "HP:0002027",
1498
- "HP:0002815",
1499
- "HP:0003073",
1500
- "HP:0003216",
1501
- "HP:0003259",
1502
- "HP:0003565",
1503
- "HP:0010783",
1504
- "HP:0011227",
1505
- "HP:0011956",
1506
- "HP:0012378",
1507
- "HP:0012596",
1508
- "HP:0012597",
1509
- "HP:0030166",
1510
- "HP:0030838",
1511
- "HP:0100016",
1512
- "HP:0100539"
1513
- ],
1514
- [
1515
- "OMIM:142680",
1516
- "ORPHA:32960"
1517
- ]
1518
- ],
1519
- [
1520
- [
1521
- "HP:0000138",
1522
- "HP:0001397",
1523
- "HP:0001744",
1524
- "HP:0001945",
1525
- "HP:0002829",
1526
- "HP:0002875",
1527
- "HP:0003326",
1528
- "HP:0003546",
1529
- "HP:0011227",
1530
- "HP:0030166"
1531
- ],
1532
- [
1533
- "CCRD:28",
1534
- "OMIM:134610",
1535
- "OMIM:249100",
1536
- "ORPHA:342"
1537
- ]
1538
- ],
1539
- [
1540
- [
1541
- "HP:0000017",
1542
- "HP:0000107",
1543
- "HP:0000138",
1544
- "HP:0000975",
1545
- "HP:0001041",
1546
- "HP:0001386",
1547
- "HP:0001397",
1548
- "HP:0001541",
1549
- "HP:0001649",
1550
- "HP:0001735",
1551
- "HP:0001780",
1552
- "HP:0002013",
1553
- "HP:0002014",
1554
- "HP:0002018",
1555
- "HP:0002059",
1556
- "HP:0002094",
1557
- "HP:0002102",
1558
- "HP:0002149",
1559
- "HP:0002155",
1560
- "HP:0002202",
1561
- "HP:0002240",
1562
- "HP:0002829",
1563
- "HP:0002896",
1564
- "HP:0002923",
1565
- "HP:0003124",
1566
- "HP:0003149",
1567
- "HP:0003281",
1568
- "HP:0003326",
1569
- "HP:0003418",
1570
- "HP:0003496",
1571
- "HP:0003546",
1572
- "HP:0003573",
1573
- "HP:0005197",
1574
- "HP:0005339",
1575
- "HP:0006163",
1576
- "HP:0009726",
1577
- "HP:0009830",
1578
- "HP:0011227",
1579
- "HP:0012611",
1580
- "HP:0025346",
1581
- "HP:0030833",
1582
- "HP:0030834",
1583
- "HP:0030837",
1584
- "HP:0030948",
1585
- "HP:0031226",
1586
- "HP:0031520",
1587
- "HP:0032300",
1588
- "HP:0100512",
1589
- "HP:0100643",
1590
- "HP:0100785",
1591
- "HP:0410367"
1592
- ],
1593
- [
1594
- "ORPHA:81"
1595
- ]
1596
- ],
1597
- [
1598
- [
1599
- "HP:0000093",
1600
- "HP:0000245",
1601
- "HP:0000377",
1602
- "HP:0000433",
1603
- "HP:0000790",
1604
- "HP:0001063",
1605
- "HP:0001785",
1606
- "HP:0001903",
1607
- "HP:0002910",
1608
- "HP:0003259",
1609
- "HP:0011227",
1610
- "HP:0012213",
1611
- "HP:0032230"
1612
- ],
1613
- [
1614
- "OMIM:608710",
1615
- "ORPHA:900"
1616
- ]
1617
- ],
1618
- [
1619
- [
1620
- "HP:0000155",
1621
- "HP:0000217",
1622
- "HP:0000360",
1623
- "HP:0000365",
1624
- "HP:0000520",
1625
- "HP:0000572",
1626
- "HP:0000633",
1627
- "HP:0000651",
1628
- "HP:0000787",
1629
- "HP:0001167",
1630
- "HP:0001269",
1631
- "HP:0001288",
1632
- "HP:0001369",
1633
- "HP:0001653",
1634
- "HP:0001947",
1635
- "HP:0001974",
1636
- "HP:0002076",
1637
- "HP:0002321",
1638
- "HP:0002829",
1639
- "HP:0002875",
1640
- "HP:0002925",
1641
- "HP:0003474",
1642
- "HP:0003537",
1643
- "HP:0003546",
1644
- "HP:0011935",
1645
- "HP:0030833",
1646
- "HP:0032154",
1647
- "HP:0100512",
1648
- "HP:0200037",
1649
- "HP:0200039"
1650
- ],
1651
- [
1652
- "OMIM:106300",
1653
- "OMIM:109650",
1654
- "OMIM:183840",
1655
- "ORPHA:117"
1656
- ]
1657
- ],
1658
- [
1659
- [
1660
- "HP:0000246",
1661
- "HP:0000822",
1662
- "HP:0000958",
1663
- "HP:0000980",
1664
- "HP:0001894",
1665
- "HP:0001903",
1666
- "HP:0001920",
1667
- "HP:0001945",
1668
- "HP:0001974",
1669
- "HP:0002013",
1670
- "HP:0002027",
1671
- "HP:0002094",
1672
- "HP:0002754",
1673
- "HP:0002910",
1674
- "HP:0003138",
1675
- "HP:0003237",
1676
- "HP:0003259",
1677
- "HP:0003418",
1678
- "HP:0003493",
1679
- "HP:0003546",
1680
- "HP:0003565",
1681
- "HP:0004396",
1682
- "HP:0011097",
1683
- "HP:0011227",
1684
- "HP:0030157",
1685
- "HP:0030948",
1686
- "HP:0031030",
1687
- "HP:0032483",
1688
- "HP:0100016",
1689
- "HP:0200034",
1690
- "HP:0410019"
1691
- ],
1692
- [
1693
- "OMIM:207600",
1694
- "ORPHA:3287"
1695
- ]
1696
- ],
1697
- [
1698
- [
1699
- "HP:0001397",
1700
- "HP:0002385",
1701
- "HP:0002817",
1702
- "HP:0002910",
1703
- "HP:0003115",
1704
- "HP:0003236",
1705
- "HP:0003259",
1706
- "HP:0003326",
1707
- "HP:0003493",
1708
- "HP:0005110",
1709
- "HP:0005145",
1710
- "HP:0008978",
1711
- "HP:0011713",
1712
- "HP:0012213",
1713
- "HP:0012596",
1714
- "HP:0012597",
1715
- "HP:0030167",
1716
- "HP:0030948",
1717
- "HP:0031185",
1718
- "HP:0100545"
1719
- ],
1720
- [
1721
- "ORPHA:171",
1722
- "ORPHA:732"
1723
- ]
1724
- ],
1725
- [
1726
- [
1727
- "HP:0000364",
1728
- "HP:0000572",
1729
- "HP:0000822",
1730
- "HP:0000975",
1731
- "HP:0001288",
1732
- "HP:0001397",
1733
- "HP:0001575",
1734
- "HP:0001659",
1735
- "HP:0001744",
1736
- "HP:0002014",
1737
- "HP:0002018",
1738
- "HP:0002019",
1739
- "HP:0002046",
1740
- "HP:0002242",
1741
- "HP:0002315",
1742
- "HP:0002321",
1743
- "HP:0002814",
1744
- "HP:0002829",
1745
- "HP:0002875",
1746
- "HP:0002910",
1747
- "HP:0003115",
1748
- "HP:0003141",
1749
- "HP:0003236",
1750
- "HP:0003270",
1751
- "HP:0003281",
1752
- "HP:0003418",
1753
- "HP:0003474",
1754
- "HP:0003546",
1755
- "HP:0004386",
1756
- "HP:0004756",
1757
- "HP:0005263",
1758
- "HP:0006682",
1759
- "HP:0011227",
1760
- "HP:0011712",
1761
- "HP:0011911",
1762
- "HP:0012185",
1763
- "HP:0012317",
1764
- "HP:0012513",
1765
- "HP:0012514",
1766
- "HP:0012534",
1767
- "HP:0025269",
1768
- "HP:0030833",
1769
- "HP:0030838",
1770
- "HP:0031520",
1771
- "HP:0031588",
1772
- "HP:0100512",
1773
- "HP:0100749",
1774
- "HP:0100785"
1775
- ],
1776
- [
1777
- "OMIM:106300",
1778
- "OMIM:183840"
1779
- ]
1780
- ],
1781
- [
1782
- [
1783
- "HP:0000853",
1784
- "HP:0001081",
1785
- "HP:0001369",
1786
- "HP:0001600",
1787
- "HP:0001679",
1788
- "HP:0001894",
1789
- "HP:0001903",
1790
- "HP:0001945",
1791
- "HP:0001974",
1792
- "HP:0002240",
1793
- "HP:0002242",
1794
- "HP:0002829",
1795
- "HP:0002910",
1796
- "HP:0003072",
1797
- "HP:0003155",
1798
- "HP:0003326",
1799
- "HP:0003546",
1800
- "HP:0005413",
1801
- "HP:0011227",
1802
- "HP:0025022",
1803
- "HP:0025289",
1804
- "HP:0030166",
1805
- "HP:0030839",
1806
- "HP:0030948"
1807
- ],
1808
- [
1809
- "OMIM:120100",
1810
- "OMIM:191900",
1811
- "OMIM:607115",
1812
- "OMIM:611762",
1813
- "OMIM:614468",
1814
- "OMIM:616115",
1815
- "ORPHA:1451",
1816
- "ORPHA:47045",
1817
- "ORPHA:575"
1818
- ]
1819
- ],
1820
- [
1821
- [
1822
- "HP:0000083",
1823
- "HP:0000089",
1824
- "HP:0000097",
1825
- "HP:0000821",
1826
- "HP:0001903",
1827
- "HP:0002014",
1828
- "HP:0002153",
1829
- "HP:0003073",
1830
- "HP:0003138",
1831
- "HP:0003165",
1832
- "HP:0003259",
1833
- "HP:0012213",
1834
- "HP:0012595",
1835
- "HP:0100512",
1836
- "HP:0200034"
1837
- ],
1838
- [
1839
- "CCRD:27",
1840
- "OMIM:301500",
1841
- "ORPHA:324"
1842
- ]
1843
- ],
1844
- [
1845
- [
1846
- "HP:0000736",
1847
- "HP:0001873",
1848
- "HP:0001981",
1849
- "HP:0002172",
1850
- "HP:0002321",
1851
- "HP:0002910",
1852
- "HP:0003138",
1853
- "HP:0003259",
1854
- "HP:0003546",
1855
- "HP:0007185",
1856
- "HP:0008330",
1857
- "HP:0012213",
1858
- "HP:0020181",
1859
- "HP:0025435",
1860
- "HP:0032308",
1861
- "HP:0100661"
1862
- ],
1863
- [
1864
- "OMIM:274150",
1865
- "ORPHA:54057"
1866
- ]
1867
- ],
1868
- [
1869
- [
1870
- "HP:0000869",
1871
- "HP:0001629",
1872
- "HP:0001659",
1873
- "HP:0001744",
1874
- "HP:0001824",
1875
- "HP:0001894",
1876
- "HP:0001935",
1877
- "HP:0001945",
1878
- "HP:0001970",
1879
- "HP:0002094",
1880
- "HP:0002829",
1881
- "HP:0003138",
1882
- "HP:0003546",
1883
- "HP:0003565",
1884
- "HP:0005259",
1885
- "HP:0011712",
1886
- "HP:0012122",
1887
- "HP:0012213",
1888
- "HP:0012513",
1889
- "HP:0012595",
1890
- "HP:0012735",
1891
- "HP:0030157",
1892
- "HP:0030833",
1893
- "HP:0031664",
1894
- "HP:0100515",
1895
- "HP:0100584"
1896
- ],
1897
- [
1898
- "OMIM:607665"
1899
- ]
1900
- ],
1901
- [
1902
- [
1903
- "HP:0000545",
1904
- "HP:0000651",
1905
- "HP:0000958",
1906
- "HP:0001155",
1907
- "HP:0001265",
1908
- "HP:0001760",
1909
- "HP:0001875",
1910
- "HP:0002570",
1911
- "HP:0002781",
1912
- "HP:0002829",
1913
- "HP:0002883",
1914
- "HP:0003236",
1915
- "HP:0006536",
1916
- "HP:0007210",
1917
- "HP:0012513",
1918
- "HP:0012534",
1919
- "HP:0025238",
1920
- "HP:0040126",
1921
- "HP:0100827",
1922
- "HP:0410281"
1923
- ],
1924
- [
1925
- "OMIM:133020",
1926
- "ORPHA:90026"
1927
- ]
1928
- ],
1929
- [
1930
- [
1931
- "HP:0000093",
1932
- "HP:0000142",
1933
- "HP:0000164",
1934
- "HP:0000246",
1935
- "HP:0000433",
1936
- "HP:0000713",
1937
- "HP:0000822",
1938
- "HP:0001041",
1939
- "HP:0001288",
1940
- "HP:0001384",
1941
- "HP:0001596",
1942
- "HP:0001600",
1943
- "HP:0001785",
1944
- "HP:0001945",
1945
- "HP:0001959",
1946
- "HP:0001962",
1947
- "HP:0002019",
1948
- "HP:0002020",
1949
- "HP:0002027",
1950
- "HP:0002315",
1951
- "HP:0002321",
1952
- "HP:0002829",
1953
- "HP:0002875",
1954
- "HP:0002923",
1955
- "HP:0003419",
1956
- "HP:0003474",
1957
- "HP:0003493",
1958
- "HP:0005197",
1959
- "HP:0006253",
1960
- "HP:0006256",
1961
- "HP:0007042",
1962
- "HP:0010741",
1963
- "HP:0011911",
1964
- "HP:0012085",
1965
- "HP:0012213",
1966
- "HP:0012219",
1967
- "HP:0012378",
1968
- "HP:0012479",
1969
- "HP:0012514",
1970
- "HP:0012534",
1971
- "HP:0030157",
1972
- "HP:0030166",
1973
- "HP:0030269",
1974
- "HP:0030837",
1975
- "HP:0030838",
1976
- "HP:0030899",
1977
- "HP:0031284",
1978
- "HP:0031352",
1979
- "HP:0031520",
1980
- "HP:0040264",
1981
- "HP:0100515",
1982
- "HP:0100540",
1983
- "HP:0100749",
1984
- "HP:0410019"
1985
- ],
1986
- [
1987
- "CCRD:112",
1988
- "OMIM:181750",
1989
- "ORPHA:220393",
1990
- "ORPHA:220402",
1991
- "ORPHA:732",
1992
- "ORPHA:801",
1993
- "ORPHA:90289",
1994
- "ORPHA:90290",
1995
- "ORPHA:90291"
1996
- ]
1997
- ],
1998
- [
1999
- [
2000
- "HP:0000217",
2001
- "HP:0000505",
2002
- "HP:0001824",
2003
- "HP:0001945",
2004
- "HP:0002907",
2005
- "HP:0002910",
2006
- "HP:0003418",
2007
- "HP:0003546",
2008
- "HP:0003565",
2009
- "HP:0004396",
2010
- "HP:0010783",
2011
- "HP:0011227",
2012
- "HP:0011801",
2013
- "HP:0012122",
2014
- "HP:0012577",
2015
- "HP:0012595",
2016
- "HP:0025289",
2017
- "HP:0030166",
2018
- "HP:0200026"
2019
- ],
2020
- [
2021
- "OMIM:181000",
2022
- "OMIM:612387",
2023
- "ORPHA:797"
2024
- ]
2025
- ],
2026
- [
2027
- [
2028
- "HP:0000155",
2029
- "HP:0002315",
2030
- "HP:0002354",
2031
- "HP:0002754",
2032
- "HP:0002758",
2033
- "HP:0002808",
2034
- "HP:0002870",
2035
- "HP:0003028",
2036
- "HP:0003418",
2037
- "HP:0008419",
2038
- "HP:0030840",
2039
- "HP:0032154",
2040
- "HP:0200039"
2041
- ],
2042
- [
2043
- "ORPHA:793"
2044
- ]
2045
- ],
2046
- [
2047
- [
2048
- "HP:0000098",
2049
- "HP:0000107",
2050
- "HP:0000138",
2051
- "HP:0000501",
2052
- "HP:0000545",
2053
- "HP:0001167",
2054
- "HP:0001761",
2055
- "HP:0001824",
2056
- "HP:0002615",
2057
- "HP:0002619",
2058
- "HP:0002763",
2059
- "HP:0002829",
2060
- "HP:0002857",
2061
- "HP:0002875",
2062
- "HP:0002907",
2063
- "HP:0004386",
2064
- "HP:0005086",
2065
- "HP:0005108",
2066
- "HP:0005263",
2067
- "HP:0007663",
2068
- "HP:0010741",
2069
- "HP:0030835",
2070
- "HP:0030838",
2071
- "HP:0030839",
2072
- "HP:0031520",
2073
- "HP:0032191"
2074
- ],
2075
- [
2076
- "OMIM:108300",
2077
- "OMIM:184840",
2078
- "OMIM:604841",
2079
- "OMIM:614134",
2080
- "OMIM:614284",
2081
- "ORPHA:166100",
2082
- "ORPHA:250984",
2083
- "ORPHA:828",
2084
- "ORPHA:90653",
2085
- "ORPHA:90654"
2086
- ]
2087
- ],
2088
- [
2089
- [
2090
- "HP:0000083",
2091
- "HP:0000100",
2092
- "HP:0001698",
2093
- "HP:0001701",
2094
- "HP:0001903",
2095
- "HP:0003259",
2096
- "HP:0003493",
2097
- "HP:0003546",
2098
- "HP:0004431",
2099
- "HP:0012378",
2100
- "HP:0012596",
2101
- "HP:0012597"
2102
- ],
2103
- [
2104
- "OMIM:152700",
2105
- "OMIM:606579",
2106
- "OMIM:609939",
2107
- "OMIM:614420",
2108
- "ORPHA:93552"
2109
- ]
2110
- ],
2111
- [
2112
- [
2113
- "HP:0000142",
2114
- "HP:0000155",
2115
- "HP:0000217",
2116
- "HP:0001097",
2117
- "HP:0001167",
2118
- "HP:0002014",
2119
- "HP:0002027",
2120
- "HP:0002240",
2121
- "HP:0002315",
2122
- "HP:0002814",
2123
- "HP:0002829",
2124
- "HP:0002896",
2125
- "HP:0003124",
2126
- "HP:0003282",
2127
- "HP:0003474",
2128
- "HP:0003546",
2129
- "HP:0004326",
2130
- "HP:0005263",
2131
- "HP:0007042",
2132
- "HP:0010784",
2133
- "HP:0010876",
2134
- "HP:0012514",
2135
- "HP:0012534",
2136
- "HP:0030057",
2137
- "HP:0030140",
2138
- "HP:0030166",
2139
- "HP:0032483",
2140
- "HP:0100633",
2141
- "HP:0100643"
2142
- ],
2143
- [
2144
- "OMIM:270150"
2145
- ]
2146
- ],
2147
- [
2148
- [
2149
- "HP:0000821",
2150
- "HP:0001744",
2151
- "HP:0001888",
2152
- "HP:0001935",
2153
- "HP:0001945",
2154
- "HP:0002018",
2155
- "HP:0002094",
2156
- "HP:0002102",
2157
- "HP:0002202",
2158
- "HP:0002901",
2159
- "HP:0004396",
2160
- "HP:0010931",
2161
- "HP:0011227",
2162
- "HP:0011703",
2163
- "HP:0012378",
2164
- "HP:0025143",
2165
- "HP:0025435",
2166
- "HP:0030160",
2167
- "HP:0100749"
2168
- ],
2169
- [
2170
- "CCRD:28",
2171
- "OMIM:134610",
2172
- "OMIM:249100",
2173
- "ORPHA:342"
2174
- ]
2175
- ],
2176
- [
2177
- [
2178
- "HP:0000365",
2179
- "HP:0001288",
2180
- "HP:0001397",
2181
- "HP:0001407",
2182
- "HP:0001698",
2183
- "HP:0001744",
2184
- "HP:0002088",
2185
- "HP:0002240",
2186
- "HP:0002385",
2187
- "HP:0003474",
2188
- "HP:0012384",
2189
- "HP:0012514",
2190
- "HP:0030423",
2191
- "HP:0032230",
2192
- "HP:0100785"
2193
- ],
2194
- [
2195
- "OMIM:608710",
2196
- "ORPHA:900"
2197
- ]
2198
- ],
2199
- [
2200
- [
2201
- "HP:0000107",
2202
- "HP:0000121",
2203
- "HP:0001288",
2204
- "HP:0001369",
2205
- "HP:0001744",
2206
- "HP:0001875",
2207
- "HP:0001882",
2208
- "HP:0001913",
2209
- "HP:0001935",
2210
- "HP:0002148",
2211
- "HP:0002240",
2212
- "HP:0002315",
2213
- "HP:0002321",
2214
- "HP:0002716",
2215
- "HP:0002814",
2216
- "HP:0002875",
2217
- "HP:0003418",
2218
- "HP:0003546",
2219
- "HP:0003565",
2220
- "HP:0004418",
2221
- "HP:0005108",
2222
- "HP:0005268",
2223
- "HP:0006256",
2224
- "HP:0006261",
2225
- "HP:0007210",
2226
- "HP:0010287",
2227
- "HP:0012513",
2228
- "HP:0012514",
2229
- "HP:0012534",
2230
- "HP:0025238",
2231
- "HP:0030833",
2232
- "HP:0030836",
2233
- "HP:0030837",
2234
- "HP:0030838",
2235
- "HP:0030839",
2236
- "HP:0030840"
2237
- ],
2238
- [
2239
- "OMIM:134750",
2240
- "ORPHA:47612"
2241
- ]
2242
- ],
2243
- [
2244
- [
2245
- "HP:0000365",
2246
- "HP:0000822",
2247
- "HP:0002105",
2248
- "HP:0002315",
2249
- "HP:0002829",
2250
- "HP:0012384",
2251
- "HP:0030836",
2252
- "HP:0030839",
2253
- "HP:0030840"
2254
- ],
2255
- [
2256
- "OMIM:608710",
2257
- "ORPHA:900"
2258
- ]
2259
- ],
2260
- [
2261
- [
2262
- "HP:0000083",
2263
- "HP:0000366",
2264
- "HP:0000377",
2265
- "HP:0000572",
2266
- "HP:0000938",
2267
- "HP:0001041",
2268
- "HP:0001167",
2269
- "HP:0001225",
2270
- "HP:0001780",
2271
- "HP:0001880",
2272
- "HP:0001935",
2273
- "HP:0003546",
2274
- "HP:0009129",
2275
- "HP:0010741",
2276
- "HP:0011911",
2277
- "HP:0025238",
2278
- "HP:0030834",
2279
- "HP:0100534",
2280
- "HP:0100758"
2281
- ],
2282
- [
2283
- "ORPHA:728"
2284
- ]
2285
- ],
2286
- [
2287
- [
2288
- "HP:0000766",
2289
- "HP:0001974",
2290
- "HP:0002094",
2291
- "HP:0002754",
2292
- "HP:0002758",
2293
- "HP:0003565",
2294
- "HP:0011227",
2295
- "HP:0100749",
2296
- "HP:0100774"
2297
- ],
2298
- [
2299
- "ORPHA:793"
2300
- ]
2301
- ],
2302
- [
2303
- [
2304
- "HP:0000223",
2305
- "HP:0000793",
2306
- "HP:0000967",
2307
- "HP:0002315",
2308
- "HP:0012378"
2309
- ],
2310
- [
2311
- "ORPHA:761"
2312
- ]
2313
- ],
2314
- [
2315
- [
2316
- "HP:0000217",
2317
- "HP:0000858",
2318
- "HP:0001097",
2319
- "HP:0001882",
2320
- "HP:0002014",
2321
- "HP:0020181",
2322
- "HP:0030057"
2323
- ],
2324
- [
2325
- "OMIM:152700",
2326
- "OMIM:270150",
2327
- "OMIM:606579",
2328
- "OMIM:609939",
2329
- "OMIM:614420",
2330
- "ORPHA:93552"
2331
- ]
2332
- ],
2333
- [
2334
- [
2335
- "HP:0000246",
2336
- "HP:0001880",
2337
- "HP:0002094",
2338
- "HP:0002113",
2339
- "HP:0002583",
2340
- "HP:0002910",
2341
- "HP:0003212",
2342
- "HP:0003236",
2343
- "HP:0009098",
2344
- "HP:0011227",
2345
- "HP:0011897",
2346
- "HP:0012213",
2347
- "HP:0012387",
2348
- "HP:0025066",
2349
- "HP:0025392",
2350
- "HP:0030057",
2351
- "HP:0030877",
2352
- "HP:0032300",
2353
- "HP:0100512",
2354
- "HP:0100582"
2355
- ],
2356
- [
2357
- "ORPHA:183"
2358
- ]
2359
- ],
2360
- [
2361
- [
2362
- "HP:0002633",
2363
- "HP:0003565",
2364
- "HP:0011227",
2365
- "HP:0012273",
2366
- "HP:0012378",
2367
- "HP:0025289",
2368
- "HP:0030833"
2369
- ],
2370
- [
2371
- "OMIM:207600",
2372
- "ORPHA:3287"
2373
- ]
2374
- ],
2375
- [
2376
- [
2377
- "HP:0000953",
2378
- "HP:0001894",
2379
- "HP:0001897",
2380
- "HP:0001945",
2381
- "HP:0002659",
2382
- "HP:0002910",
2383
- "HP:0003155",
2384
- "HP:0003261",
2385
- "HP:0003326",
2386
- "HP:0003565",
2387
- "HP:0005180",
2388
- "HP:0011120",
2389
- "HP:0011227",
2390
- "HP:0012735",
2391
- "HP:0025392",
2392
- "HP:0025547",
2393
- "HP:0030313",
2394
- "HP:0030840",
2395
- "HP:0030948",
2396
- "HP:0032230",
2397
- "HP:0100827"
2398
- ],
2399
- [
2400
- "OMIM:608710",
2401
- "ORPHA:900"
2402
- ]
2403
- ],
2404
- [
2405
- [
2406
- "HP:0001061",
2407
- "HP:0001649",
2408
- "HP:0001712",
2409
- "HP:0001962",
2410
- "HP:0002829",
2411
- "HP:0003115",
2412
- "HP:0004342",
2413
- "HP:0007514",
2414
- "HP:0012513",
2415
- "HP:0025131",
2416
- "HP:0030837",
2417
- "HP:0030839",
2418
- "HP:0030840",
2419
- "HP:0200034"
2420
- ],
2421
- [
2422
- "CCRD:27",
2423
- "OMIM:301500",
2424
- "ORPHA:324"
2425
- ]
2426
- ],
2427
- [
2428
- [
2429
- "HP:0001167",
2430
- "HP:0001225",
2431
- "HP:0001369",
2432
- "HP:0001386",
2433
- "HP:0001397",
2434
- "HP:0001600",
2435
- "HP:0001707",
2436
- "HP:0001780",
2437
- "HP:0001785",
2438
- "HP:0001824",
2439
- "HP:0001945",
2440
- "HP:0002027",
2441
- "HP:0002092",
2442
- "HP:0002149",
2443
- "HP:0002592",
2444
- "HP:0002815",
2445
- "HP:0002829",
2446
- "HP:0003149",
2447
- "HP:0003326",
2448
- "HP:0003401",
2449
- "HP:0003418",
2450
- "HP:0003493",
2451
- "HP:0003546",
2452
- "HP:0003565",
2453
- "HP:0004396",
2454
- "HP:0005197",
2455
- "HP:0005202",
2456
- "HP:0010741",
2457
- "HP:0011227",
2458
- "HP:0011956",
2459
- "HP:0012185",
2460
- "HP:0012398",
2461
- "HP:0012611",
2462
- "HP:0025230",
2463
- "HP:0030157",
2464
- "HP:0030166",
2465
- "HP:0030836",
2466
- "HP:0030838",
2467
- "HP:0030839",
2468
- "HP:0030840",
2469
- "HP:0030841",
2470
- "HP:0030948",
2471
- "HP:0100016",
2472
- "HP:0410019"
2473
- ],
2474
- [
2475
- "ORPHA:3452"
2476
- ]
2477
- ],
2478
- [
2479
- [
2480
- "HP:0000010",
2481
- "HP:0000979",
2482
- "HP:0001945",
2483
- "HP:0001974",
2484
- "HP:0002633",
2485
- "HP:0010741",
2486
- "HP:0012514",
2487
- "HP:0031520"
2488
- ],
2489
- [
2490
- "ORPHA:761"
2491
- ]
2492
- ]
2493
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- "HP:0009891",
525
- "HP:0200055"
526
- ],
527
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528
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529
- "ORPHA:404454"
530
- ]
531
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532
- [
533
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534
- "HP:0000252",
535
- "HP:0000286",
536
- "HP:0001252",
537
- "HP:0001263",
538
- "HP:0001395",
539
- "HP:0001511",
540
- "HP:0002353",
541
- "HP:0003196",
542
- "HP:0006579",
543
- "HP:0006956",
544
- "HP:0100022"
545
- ],
546
- [
547
- "OMIM:615273",
548
- "ORPHA:404454"
549
- ]
550
- ],
551
- [
552
- [
553
- "HP:0000252",
554
- "HP:0000286",
555
- "HP:0000486",
556
- "HP:0000522",
557
- "HP:0000657",
558
- "HP:0001182",
559
- "HP:0001252",
560
- "HP:0001263",
561
- "HP:0001315",
562
- "HP:0001864",
563
- "HP:0002007",
564
- "HP:0002019",
565
- "HP:0002557",
566
- "HP:0002910",
567
- "HP:0005487",
568
- "HP:0006579",
569
- "HP:0010605",
570
- "HP:0010804",
571
- "HP:0011918"
572
- ],
573
- [
574
- "OMIM:615273",
575
- "ORPHA:404454"
576
- ]
577
- ],
578
- [
579
- [
580
- "HP:0000252",
581
- "HP:0000431",
582
- "HP:0000486",
583
- "HP:0000495",
584
- "HP:0000520",
585
- "HP:0000522",
586
- "HP:0000657",
587
- "HP:0000678",
588
- "HP:0001250",
589
- "HP:0001252",
590
- "HP:0001263",
591
- "HP:0001315",
592
- "HP:0001511",
593
- "HP:0001773",
594
- "HP:0002019",
595
- "HP:0002353",
596
- "HP:0002553",
597
- "HP:0002650",
598
- "HP:0005320",
599
- "HP:0200055"
600
- ],
601
- [
602
- "OMIM:615273",
603
- "ORPHA:404454"
604
- ]
605
- ],
606
- [
607
- [
608
- "HP:0000252",
609
- "HP:0000718",
610
- "HP:0001250",
611
- "HP:0010864"
612
- ],
613
- [
614
- "OMIM:604317",
615
- "ORPHA:2512"
616
- ]
617
- ],
618
- [
619
- [
620
- "HP:0000639",
621
- "HP:0000648",
622
- "HP:0001252",
623
- "HP:0001254",
624
- "HP:0001260",
625
- "HP:0002066",
626
- "HP:0002370",
627
- "HP:0007965",
628
- "HP:0008619"
629
- ],
630
- [
631
- "OMIM:601338",
632
- "ORPHA:1171"
633
- ]
634
- ],
635
- [
636
- [
637
- "HP:0000218",
638
- "HP:0000278",
639
- "HP:0000316",
640
- "HP:0000319",
641
- "HP:0000347",
642
- "HP:0000369",
643
- "HP:0000494",
644
- "HP:0000768",
645
- "HP:0001166",
646
- "HP:0001265",
647
- "HP:0001363",
648
- "HP:0001388",
649
- "HP:0001537",
650
- "HP:0001655",
651
- "HP:0001762",
652
- "HP:0001763",
653
- "HP:0002151",
654
- "HP:0002410",
655
- "HP:0002474",
656
- "HP:0002868",
657
- "HP:0003298",
658
- "HP:0003396",
659
- "HP:0006801",
660
- "HP:0006889",
661
- "HP:0010665",
662
- "HP:0011220"
663
- ],
664
- [
665
- "OMIM:182212",
666
- "ORPHA:2462"
667
- ]
668
- ],
669
- [
670
- [
671
- "HP:0000218",
672
- "HP:0000286",
673
- "HP:0000316",
674
- "HP:0000322",
675
- "HP:0000348",
676
- "HP:0000463",
677
- "HP:0000954",
678
- "HP:0001252",
679
- "HP:0001263",
680
- "HP:0001344",
681
- "HP:0002007",
682
- "HP:0002079",
683
- "HP:0002282",
684
- "HP:0002912",
685
- "HP:0003196",
686
- "HP:0006956",
687
- "HP:0007793",
688
- "HP:0008070",
689
- "HP:0010055",
690
- "HP:0010804",
691
- "HP:0012120",
692
- "HP:0012448",
693
- "HP:0040155",
694
- "HP:0045034"
695
- ],
696
- [
697
- "OMIM:614105"
698
- ]
699
- ],
700
- [
701
- [
702
- "HP:0000325",
703
- "HP:0000430",
704
- "HP:0000490",
705
- "HP:0000558",
706
- "HP:0000684",
707
- "HP:0004322",
708
- "HP:0007495",
709
- "HP:0009125"
710
- ],
711
- [
712
- "OMIM:269880",
713
- "ORPHA:3163"
714
- ]
715
- ],
716
- [
717
- [
718
- "HP:0000085",
719
- "HP:0000179",
720
- "HP:0000215",
721
- "HP:0000252",
722
- "HP:0000348",
723
- "HP:0000490",
724
- "HP:0000545",
725
- "HP:0000582",
726
- "HP:0000670",
727
- "HP:0000689",
728
- "HP:0001643",
729
- "HP:0002342",
730
- "HP:0003189",
731
- "HP:0009765",
732
- "HP:0009890",
733
- "HP:0012745"
734
- ],
735
- [
736
- "OMIM:613680"
737
- ]
738
- ],
739
- [
740
- [
741
- "HP:0000010",
742
- "HP:0000230",
743
- "HP:0000403",
744
- "HP:0001744",
745
- "HP:0001875",
746
- "HP:0001888",
747
- "HP:0004854",
748
- "HP:0004866",
749
- "HP:0005401",
750
- "HP:0012138"
751
- ],
752
- [
753
- "OMIM:612541",
754
- "CCRD:104"
755
- ]
756
- ],
757
- [
758
- [
759
- "HP:0001539",
760
- "HP:0005214",
761
- "HP:0011100"
762
- ],
763
- [
764
- "OMIM:243150",
765
- "ORPHA:436252"
766
- ]
767
- ],
768
- [
769
- [
770
- "HP:0000252",
771
- "HP:0000486",
772
- "HP:0000522",
773
- "HP:0000657",
774
- "HP:0001252",
775
- "HP:0001263",
776
- "HP:0001395",
777
- "HP:0001773",
778
- "HP:0002019",
779
- "HP:0002059",
780
- "HP:0002079",
781
- "HP:0002151",
782
- "HP:0002353",
783
- "HP:0002472",
784
- "HP:0002910",
785
- "HP:0006579",
786
- "HP:0006958",
787
- "HP:0010605",
788
- "HP:0030303",
789
- "HP:0100022",
790
- "HP:0200055"
791
- ],
792
- [
793
- "OMIM:615273",
794
- "ORPHA:404454"
795
- ]
796
- ]
797
- ]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
RDpatient_data/Public/RAMEDIS.json DELETED
The diff for this file is too large to render. See raw diff
 
README.md CHANGED
@@ -4,8 +4,8 @@ configs:
4
  data_files:
5
  - split: test
6
  path:
7
- - RDpatient_data/Public/*.json
8
- - RDpatient_data/PUMCH/*.json
9
  license: apache-2.0
10
  task_categories:
11
  - question-answering
@@ -13,14 +13,18 @@ language:
13
  - en
14
  tags:
15
  - medical
 
 
16
  ---
17
 
18
- # Dataset Card for Dataset Name
19
 
20
  <!-- Provide a quick summary of the dataset. -->
21
 
22
  This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
23
 
 
 
24
  ## Dataset Details
25
 
26
  ### Dataset Description
@@ -151,4 +155,16 @@ Users should be made aware of the risks, biases and limitations of the dataset.
151
 
152
  ## Dataset Card Contact
153
 
154
- [More Information Needed]
 
 
 
 
 
 
 
 
 
 
 
 
 
4
  data_files:
5
  - split: test
6
  path:
7
+ # - RDpatient_data/Public/*.json
8
+ - RDpatient_data/PUMCH/*.jsonl
9
  license: apache-2.0
10
  task_categories:
11
  - question-answering
 
13
  - en
14
  tags:
15
  - medical
16
+ size_categories:
17
+ - 1K<n<10K
18
  ---
19
 
20
+ # RareBench
21
 
22
  <!-- Provide a quick summary of the dataset. -->
23
 
24
  This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
25
 
26
+ Github Repo for RareBench: https://github.com/chenxz1111/RareBench Arxiv Paper for RareBench: https://arxiv.org/pdf/2402.06341.pdf
27
+
28
  ## Dataset Details
29
 
30
  ### Dataset Description
 
155
 
156
  ## Dataset Card Contact
157
 
158
+ [More Information Needed]
159
+
160
+
161
+ <a name="citation"></a>
162
+ ## 📝 Citation
163
+ ```
164
+ @article{chen2024rarebench,
165
+ title={RareBench: Can LLMs Serve as Rare Diseases Specialists?},
166
+ author={Chen, Xuanzhong and Mao, Xiaohao and Guo, Qihan and Wang, Lun and Zhang, Shuyang and Chen, Ting},
167
+ journal={arXiv preprint arXiv:2402.06341},
168
+ year={2024}
169
+ }
170
+ ```