#!/usr/bin/env python3 """ In-place repair for a Zarr store with mismatched time dimension lengths. - Compares the length of the 1D `time` array with the leading dimension of the 3D `maxunitstreamflow` array. - Resizes the longer one down to the shorter to restore consistency. Usage: ml conda; conda activate credit python /glade/work/li1995/FLASH/data/fix.py """ from __future__ import annotations import zarr STORE_PATH = "/glade/derecho/scratch/li1995/data/maxunitstreamflow_2021_2025_10min.zarr" def main() -> None: root = zarr.open(STORE_PATH, mode="r+") time_arr = root["time"] # shape: (T,) data_arr = root["maxunitstreamflow"] # shape: (T, Y, X) lat_arr = root.get("latitude") lon_arr = root.get("longitude") t_time = int(time_arr.shape[0]) t_data = int(data_arr.shape[0]) y_size = int(data_arr.shape[1]) x_size = int(data_arr.shape[2]) print(f"Before: time={t_time}, data_time={t_data}, data_shape={data_arr.shape}") if lat_arr is not None: print(f"Latitude size: {lat_arr.shape}") if lon_arr is not None: print(f"Longitude size: {lon_arr.shape}") target_len = min(t_time, t_data) if t_data > target_len: print(f"Resizing maxunitstreamflow from {t_data} to {target_len}") data_arr.resize((target_len, y_size, x_size)) if t_time > target_len: print(f"Resizing time from {t_time} to {target_len}") time_arr.resize((target_len,)) # Re-read and report t_time2 = int(time_arr.shape[0]) t_data2 = int(data_arr.shape[0]) print(f"After: time={t_time2}, data_time={t_data2}, data_shape={data_arr.shape}") if __name__ == "__main__": main()