run_accession stringlengths 9 11 | conf_run_accession int64 5 5 | study_accession stringlengths 7 12 | conf_study_accession int64 3 5 | instrument_platform stringclasses 9
values | conf_instrument_platform int64 5 5 | library_selection stringclasses 6
values | conf_library_selection int64 5 5 | library_strategy stringclasses 1
value | conf_library_strategy int64 5 5 | base_count int64 61.5M 428B | conf_base_count int64 5 5 | sequencing_source stringclasses 5
values | conf_sequencing_source int64 5 5 | biopsy_site stringclasses 603
values | conf_biopsy_site int64 3 5 | bs_uberon_code stringclasses 460
values | conf_bs_uberon_code int64 3 5 | biopsy_type stringclasses 3
values | conf_biopsy_type int64 5 5 | cell_line stringlengths 1 46 | conf_cell_line int64 3 5 | cell_type stringlengths 1 80 | conf_cell_type int64 5 5 | cl_code stringclasses 491
values | conf_cl_code int64 5 5 | organ stringclasses 320
values | conf_organ int64 3 5 | organ_uberon_code stringclasses 256
values | conf_organ_uberon_code int64 3 5 | disease stringclasses 529
values | conf_disease int64 3 5 | do_code stringclasses 435
values | conf_do_code int64 3 5 | is_cancer bool 2
classes | conf_is_cancer int64 3 5 | treatment stringlengths 1 240 | conf_treatment int64 3 5 | treatment_time stringclasses 507
values | conf_treatment_time int64 5 5 | response stringclasses 26
values | conf_response int64 5 5 | age stringclasses 811
values | conf_age int64 3 5 | sex stringclasses 3
values | conf_sex int64 3 5 | ethnicity stringclasses 429
values | conf_ethnicity int64 5 5 | row_confidence_1_5 int64 3 5 | confidence_reasons stringclasses 824
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR19732593 | 5 | PRJNA850145 | 5 | DNBSEQ | 5 | other | 5 | rna-seq | 5 | 96,653,147,940 | 5 | single_cell_unknown | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | LCL Orang Asli P19 | 5 | B cell | 5 | CL:0000236 | 5 | colon | 3 | UBERON:0001155 | 5 | colorectal cancer | 5 | DOID:9256 | 5 | true | 5 | immune-checkpoint inhibition | 5 | treated | 5 | success | 5 | 26Y | 5 | male | 5 | malaysian | 5 | 3 | R-ANAT-003:organ=colon, biopsy_site=peripheral blood |
SRR28590268 | 5 | PRJNA1097636 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 42,831,459,900 | 5 | bulk | 5 | brain | 3 | UBERON:0000955 | 5 | metastasis | 5 | DU145 | 5 | prostate stem cell | 5 | CL:0002339 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | doxycycline | 5 | on treatment | 5 | progressive | 5 | 69Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=brain |
SRR22247613 | 5 | PRJNA899881 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 38,016,074,080 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | NCO2 | 5 | hematopoietic cell | 5 | CL:0000988 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | chronic myeloid leukemia; bcr-abl1 positive | 5 | DOID:8552 | 5 | true | 5 | ak2292 | 5 | 8 h | 5 | success | 5 | 35Y | 5 | female | 5 | japanese | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
SRR22247620 | 5 | PRJNA899881 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 34,388,816,104 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | Ku812 | 5 | basophil | 5 | CL:0000767 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | chronic myeloid leukemia; bcr-abl1 positive | 5 | DOID:8552 | 5 | true | 5 | ak2292 | 5 | 24 h | 5 | success | 5 | 38Y | 5 | male | 5 | japanese | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
SRR25598493 | 5 | PRJNA1004222 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 27,059,563,432 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | SP-53 | 5 | lymph node mantle zone B cell | 5 | CL:0009037 | 5 | blood | 5 | UBERON:0000178 | 5 | lymphoma | 5 | DOID:0060058 | 5 | true | 5 | prmt5 | 5 | treated | 5 | progressive | 5 | 58Y | 5 | female | 5 | japanese | 5 | 5 | null |
SRR28566036 | 5 | PRJNA1096684 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 22,000,980,300 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | J.gamma1 | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | acute lymphoblastic leukemia | 5 | DOID:9952 | 5 | true | 5 | indisulam | 5 | 16h | 5 | success | 5 | 14Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR25598466 | 5 | PRJNA1004222 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,579,951,013 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | REC-1 | 5 | lymph node mantle zone B cell | 5 | CL:0009037 | 5 | blood | 5 | UBERON:0000178 | 5 | lymphoma | 5 | DOID:0060058 | 5 | true | 5 | prmt5 | 5 | treated | 5 | progressive | 5 | 61Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR21170883 | 5 | PRJNA872388 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,005,641,000 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | LNCaP | 5 | neoplastic cell | 5 | CL:0001063 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | castration | 5 | post castration | 5 | progressive | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=lymph node |
SRR28797692 | 5 | PRJNA1104164 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 14,866,847,100 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | MR42D | 5 | prostate stem cell | 5 | CL:0002339 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | jq1 | 5 | 48 hours | 5 | progressive | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=lymph node |
SRR25482938 | 5 | PRJNA985375 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,450,977,500 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | MOLM-13 | 5 | myeloid leukocyte | 5 | CL:0000766 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | doxycycline | 5 | relapse | 5 | progressive | 5 | 20Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR31931074 | 5 | PRJNA1208015 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 14,370,528,600 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | NCI-H2141 | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | lung | 3 | UBERON:0002048 | 5 | lung small cell carcinoma | 5 | DOID:5409 | 5 | true | 5 | dna pk inhibition | 5 | 72 h | 5 | success | 5 | 58Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=lymph node |
SRR21890595 | 5 | PRJNA890175 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 12,986,216,534 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | NALM-6 | 5 | B cell | 5 | CL:0000236 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | B-cell adult acute lymphocytic leukemia; acute lymphoblastic leukemia | 5 | DOID:0060592;DOID:9952 | 5 | true | 5 | idelalisib | 5 | 24 hours | 5 | success | 5 | 19Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
SRR18403886 | 5 | PRJNA817613 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 12,097,654,014 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | OCI-AML-3 | 5 | cell | 5 | CL:0000000 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | prednisolide | 5 | on treatment | 5 | success | 5 | 57Y | 5 | male | 5 | caucasian | 5 | 5 | null |
ERR2204246 | 5 | PRJEB23614 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 11,818,777,800 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | OCI-AML-2 | 5 | monocyte | 5 | CL:0000576 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | cripsr/cas9 | 5 | 8 | 5 | stable | 5 | 65Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR3400627 | 5 | PRJNA318814 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 10,931,289,590 | 5 | bulk | 5 | abdomen | 3 | UBERON:0000916 | 5 | metastasis | 5 | IMR-5/75 | 5 | neuron | 5 | CL:0000540 | 5 | nervous system | 3 | UBERON:0001016 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | mycn-low | 5 | 24h | 5 | stable | 5 | 1Y1MO | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=nervous system, biopsy_site=abdomen |
SRR6408207 | 5 | PRJNA427111 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 9,132,337,382 | 5 | single_cell_unknown | 5 | arm; skin of body | 5 | UBERON:0001460;UBERON:0002097 | 5 | metastasis | 5 | 451Lu | 5 | neoplastic cell | 5 | CL:0001063 | 5 | skin of body | 5 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | plx 4720 | 5 | 6 weeks | 5 | progressive | 5 | 22Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR1744451 | 5 | PRJNA271773 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 8,449,991,250 | 5 | bulk | 5 | leg; skin of body | 5 | UBERON:0000978;UBERON:0002097 | 5 | metastasis | 5 | A375/R | 5 | neoplastic cell | 5 | CL:0001063 | 5 | skin of body | 5 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | vemurafenib | 5 | 10 doses | 5 | progressive | 5 | 54Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR28770802 | 5 | PRJNA1103160 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 8,364,222,900 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | MV4-11 | 5 | peripheral blood lymphocyte | 5 | CL:4030030 | 5 | blood | 5 | UBERON:0000178 | 5 | acute monocytic leukemia | 5 | DOID:8864 | 5 | true | 5 | gsk032 | 5 | 2 days | 5 | success | 5 | 10Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR24900024 | 5 | PRJNA982833 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 7,210,722,625 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | NK-92 | 5 | natural killer cell | 5 | CL:0000623 | 5 | blood | 5 | UBERON:0000178 | 5 | blastic plasmacytoid dendritic cell neoplasm; lymphoma | 5 | DOID:0081076;DOID:0060058 | 5 | true | 5 | il-15/il-15ra complex | 5 | 24h | 5 | success | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR27158770 | 5 | PRJNA1050239 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 6,938,472,821 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | NCI-H3255 | 5 | epithelial cell | 5 | CL:0000066 | 5 | lung | 3 | UBERON:0002048 | 5 | lung adenocarcinoma | 5 | DOID:3910 | 5 | true | 5 | erlotinib | 5 | 21 days | 5 | success | 5 | 47Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR28384752 | 5 | PRJNA1089411 | 5 | BGISEQ | 5 | polyA | 5 | rna-seq | 5 | 6,876,739,200 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | NCI-H1650 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | lung | 3 | UBERON:0002048 | 5 | minimally invasive lung adenocarcinoma | 5 | DOID:4926 | 5 | true | 5 | paeoniae radix | 5 | 200ug | 5 | success | 5 | 27Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR5419306 | 5 | PRJNA314605 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 6,846,433,050 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | Ly11 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | blood | 5 | UBERON:0000178 | 5 | angioimmunoblastic T-cell lymphoma; peripheral T-cell lymphoma | 5 | DOID:0111147;DOID:0050749 | 5 | true | 5 | brentuximab | 5 | on chemoimmunotherapy | 5 | progressive | 5 | 65Y | 5 | male | 5 | chinese | 5 | 5 | null |
SRR20729664 | 5 | PRJNA864771 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 6,699,661,200 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | LNCaP C4-2 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | doxycycline | 5 | 48 hours | 5 | progressive | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=lymph node |
SRR10831573 | 5 | PRJNA599107 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 5,491,660,212 | 5 | single_cell_unknown | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | CCMCL1 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | mantle | 3 | UBERON:0006575 | 5 | lymphoma | 5 | DOID:0060058 | 5 | true | 5 | palbociclib | 5 | 8h | 5 | progressive | 5 | 58Y | 5 | male | 5 | asian | 5 | 3 | R-ANAT-003:organ=mantle, biopsy_site=blood |
SRR7415563 | 5 | PRJNA477597 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 5,381,108,500 | 5 | bulk | 5 | tongue | 5 | UBERON:0001723 | 5 | metastasis | 5 | SCC-4 | 5 | squamous epithelial cell | 5 | CL:0000076 | 5 | tongue | 5 | UBERON:0001723 | 5 | head and neck squamous cell carcinoma; squamous cell carcinoma | 5 | DOID:5520;DOID:1749 | 5 | true | 5 | evofosfamide | 5 | on treatment | 5 | success | 5 | 55Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR14132099 | 5 | PRJNA719177 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 5,167,036,000 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | ACHN | 5 | neoplastic cell | 5 | CL:0001063 | 5 | kidney | 3 | UBERON:0002113 | 5 | papillary renal cell carcinoma; renal cell carcinoma | 5 | DOID:4465;DOID:4450 | 5 | true | 5 | dasatinib | 5 | 24 h | 5 | success | 5 | 22Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=kidney, biopsy_site=pleural effusion |
SRR2010216 | 5 | PRJNA283141 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 4,524,831,397 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | HCC78 | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | lung | 3 | UBERON:0002048 | 5 | lung adenocarcinoma | 5 | DOID:3910 | 5 | true | 5 | to resistance with tae684 | 5 | on treatment | 5 | progressive | 5 | 65Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR15738892 | 5 | PRJNA761362 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 4,084,073,925 | 5 | bulk | 5 | abdomen | 3 | UBERON:0000916 | 5 | metastasis | 5 | IMR-32 | 5 | neural crest derived neuroblast | 5 | CL:0002676 | 5 | adrenal gland | 3 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | ykl | 5 | 5 | 5 | success | 5 | 1Y1MO | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=adrenal gland, biopsy_site=abdomen |
SRR17262783 | 5 | PRJNA789864 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 2,554,017,150 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | EFM-19 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | breast | 3 | UBERON:0000310 | 5 | breast ductal carcinoma | 5 | DOID:3007 | 5 | true | 5 | static | 5 | 6 hr | 5 | positive | 5 | 50Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=pleural effusion |
SRR15178140 | 5 | PRJNA747246 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 1,287,760,500 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | ACH-2 | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | acute lymphoblastic leukemia | 5 | DOID:9952 | 5 | false | 5 | 6-bio | 5 | on treatment | 5 | success | 5 | 3Y11MO | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR9074383 | 5 | PRJNA543332 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 1,224,817,734 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | MOLM-16 | 5 | hematopoietic cell | 5 | CL:0000988 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | sd36 | 5 | 8h | 5 | success | 5 | 77Y | 5 | female | 5 | japanese | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
SRR17264691 | 5 | PRJNA789917 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 1,020,987,344 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | NCI-H1792 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | lung | 3 | UBERON:0002048 | 5 | lung adenocarcinoma | 5 | DOID:3910 | 5 | true | 5 | 1 um rg7112 | 5 | 1 um | 5 | success | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR15011175 | 5 | PRJNA742775 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 979,374,760 | 5 | bulk | 5 | inguinal lymph node | 3 | UBERON:0001542 | 5 | metastasis | 5 | WM983B | 5 | melanocyte | 5 | CL:0000148 | 5 | skin of body | 3 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | pd901 | 5 | treated | 5 | progressive | 5 | 54Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=skin of body, biopsy_site=inguinal lymph node |
SRR8312126 | 5 | PRJNA509438 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 978,298,680 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | MM1.S | 5 | B cell | 5 | CL:0000236 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | multiple myeloma | 5 | DOID:9538 | 5 | true | 5 | bortezomib | 5 | on treatment | 5 | stable | 5 | 45Y | 5 | female | 5 | african american | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
ERR13510289 | 5 | PRJEB79139 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 186,661,515,219 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | Loucy | 5 | T cell | 5 | CL:0000084 | 5 | immune system | 3 | UBERON:0002405 | 5 | acute lymphoblastic leukemia | 5 | DOID:9952 | 5 | true | 5 | decitabine | 5 | 3 days | 5 | unknown | 5 | 38Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=immune system, biopsy_site=blood |
SRR11053315 | 5 | PRJNA605782 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 71,544,008,062 | 5 | bulk | 5 | liver | 5 | UBERON:0002107 | 5 | primary | 5 | Hep-G2 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | liver | 5 | UBERON:0002107 | 5 | hepatoblastoma | 5 | DOID:687 | 5 | true | 5 | dox | 5 | 24 hrs | 5 | stable | 5 | 15Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR25793593 | 5 | PRJNA1010759 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 59,877,805,964 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | OCI-AML-5 | 5 | myeloid leukocyte | 5 | CL:0000766 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | s767 | 5 | 24 hours | 5 | unknown | 5 | 77Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR15359450 | 5 | PRJNA752583 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 58,305,375,716 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | SK-N-AS | 5 | neural crest derived neuroblast | 5 | CL:0002676 | 5 | adrenal gland | 3 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | alcohol | 5 | 120h | 5 | unknown | 5 | 6Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=adrenal gland, biopsy_site=bone marrow |
SRR33156939 | 5 | PRJNA1251540 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 49,564,277,432 | 5 | single_cell_plate_like | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | CW50065 | 5 | neuron | 5 | CL:0000540 | 5 | brain | 3 | UBERON:0000955 | 5 | glioblastoma | 5 | DOID:3068 | 5 | true | 5 | co culture | 5 | 6 days | 5 | unknown | 5 | 74y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=brain, biopsy_site=peripheral blood |
SRR23989370 | 5 | PRJNA1088165 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 49,237,929,000 | 5 | single_cell_unknown | 5 | ascites | 3 | UBERON:0007795 | 5 | metastasis | 5 | OV-90 | 5 | ovarian surface epithelial cell | 5 | CL:2000064 | 5 | ovary | 3 | UBERON:0000992 | 5 | ovarian adenocarcinoma | 5 | DOID:2394 | 5 | true | 5 | dmso | 5 | 30min | 5 | unknown | 5 | 64Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=ovary, biopsy_site=ascites |
ERR12662928 | 5 | PRJEB72713 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 39,357,100,248 | 5 | bulk | 5 | peripheral blood | 5 | UBERON:0000178 | 5 | blood | 5 | OPM-2 | 5 | B cell | 5 | CL:0000236 | 5 | blood | 5 | UBERON:0000178 | 5 | multiple myeloma | 5 | DOID:9538 | 5 | true | 5 | aza | 5 | 24h | 5 | unknown | 5 | 56Y | 5 | female | 5 | japanese | 5 | 5 | null |
SRR31577407 | 5 | PRJNA1191523 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 39,353,031,402 | 5 | bulk | 5 | peripheral blood | 5 | UBERON:0000178 | 5 | blood | 5 | SEM | 5 | precursor B cell | 5 | CL:0000817 | 5 | blood | 5 | UBERON:0000178 | 5 | childhood B-cell acute lymphoblastic leukemia | 5 | DOID:0080146 | 5 | true | 5 | dmso | 5 | relapse | 5 | unknown | 5 | 5Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR29841142 | 5 | PRJNA1067553 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 31,903,367,400 | 5 | single_cell_unknown | 5 | ascites | 3 | UBERON:0007795 | 5 | metastasis | 5 | WaGa | 5 | neuron | 5 | CL:0000540 | 5 | ascitic fluid | 3 | UBERON:0007795 | 5 | merkel cell carcinoma | 5 | DOID:3965 | 5 | true | 5 | pant knockdown | 5 | uninduced | 5 | unknown | 5 | 67Y | 5 | male | 5 | germany | 5 | 3 | R-ANAT-003:organ=ascitic fluid, biopsy_site=ascites |
SRR23759027 | 5 | PRJNA942589 | 5 | BGISEQ | 5 | polyA | 5 | rna-seq | 5 | 31,567,801,800 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | SK-BR-3 | 5 | epithelial cell | 5 | CL:0000066 | 5 | breast; mammary gland | 3 | UBERON:0000310;UBERON:0001911 | 5 | breast adenocarcinoma | 5 | DOID:3458 | 5 | true | 5 | cinnamomum ramulus | 5 | 24 h | 5 | unknown | 5 | 43Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast; mammary gland, biopsy_site=pleural effusion |
SRR26320977 | 5 | PRJNA1025876 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 30,121,926,960 | 5 | bulk | 5 | adrenal gland | 5 | UBERON:0002369 | 5 | metastasis | 5 | CHP-134 | 5 | neural crest derived neuroblast | 5 | CL:0002676 | 5 | adrenal gland | 5 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | dtag47 | 5 | 47 | 5 | unknown | 5 | 1Y1MO | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR26980746 | 5 | PRJNA1040302 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 29,925,519,750 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | T-47D | 5 | epithelial cell | 5 | CL:0000066 | 5 | breast | 3 | UBERON:0000310 | 5 | breast cancer | 5 | DOID:1612 | 5 | true | 5 | 2d culture | 5 | 47D | 5 | unknown | 5 | 54Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=pleural effusion |
SRR32966866 | 5 | PRJNA1246165 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 29,581,453,566 | 5 | bulk | 5 | ascites | 3 | UBERON:0007795 | 5 | metastasis | 5 | AsPC-1 | 5 | pancreatic A cell | 5 | CL:0000171 | 5 | pancreas | 3 | UBERON:0001264 | 5 | pancreatic ductal adenocarcinoma | 5 | DOID:1793 | 5 | true | 5 | doxycycline | 5 | on treatment | 5 | unknown | 5 | 62Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=pancreas, biopsy_site=ascites |
SRR14678691 | 5 | PRJNA730556 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 28,044,009,864 | 5 | single_cell_droplet_like | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | XACHi011-A | 5 | neuron | 5 | CL:0000540 | 5 | brain | 3 | UBERON:0000955 | 5 | combined oxidative phosphorylation deficiency 33 | 5 | DOID:0111495 | 5 | false | 5 | organoid | 5 | 8 weeks | 5 | unknown | 5 | 37Y | 5 | female | 5 | chinese | 5 | 3 | R-ANAT-003:organ=brain, biopsy_site=blood |
SRR23397877 | 5 | PRJNA934590 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 27,643,976,730 | 5 | single_cell_droplet_like | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | LNCaP C4-2B | 5 | neoplastic cell | 5 | CL:0001063 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | cellular reprogramming | 4 | 14 days | 5 | unknown | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=lymph node, R-LEAK-TRT-001:treatment=cellular reprogramming is more typical of cell_type vocabulary (reprogramming cells, similarity=0.936) |
SRR21639851 | 5 | PRJNA882396 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 27,268,464,744 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | Tet21N | 5 | neuron | 5 | CL:0000540 | 5 | nervous system | 3 | UBERON:0001016 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | sisnrpd3 | 5 | on treatment | 5 | unknown | 5 | 4Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=nervous system, biopsy_site=bone marrow |
SRR29061119 | 5 | PRJNA1112468 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 25,706,334,000 | 5 | bulk | 5 | pancreas; islet of langerhans | 5 | UBERON:0001264;UBERON:0000006 | 5 | primary | 5 | QGP-1 | 5 | pancreatic D cell | 5 | CL:0000173 | 5 | pancreas | 5 | UBERON:0001264 | 5 | pancreatic somatostatinoma | 5 | DOID:4432 | 5 | true | 5 | doxycycline | 5 | on treatment | 5 | progressive | 5 | 61Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR14678688 | 5 | PRJNA730556 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 25,514,304,173 | 5 | single_cell_droplet_like | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | UNIBSi005-A | 5 | neuron | 5 | CL:0000540 | 5 | brain | 3 | UBERON:0000955 | 5 | Crohn's disease | 5 | DOID:8778 | 5 | false | 5 | organoid | 5 | 8 weeks | 5 | unknown | 5 | 17Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=brain, biopsy_site=blood |
SRR23864123 | 5 | PRJNA944678 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 25,362,838,614 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | NKM-1 | 5 | hematopoietic cell | 5 | CL:0000988 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | e7820 | 5 | 24 hours | 5 | unknown | 5 | 33Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR23759029 | 5 | PRJNA942589 | 5 | BGISEQ | 5 | polyA | 5 | rna-seq | 5 | 25,361,104,200 | 5 | bulk | 5 | ascites | 5 | UBERON:0007795 | 5 | metastasis | 5 | SK-OV-3 | 5 | epithelial cell | 5 | CL:0000066 | 5 | ovary; ascites | 5 | UBERON:0000992 | 5 | ovarian serous cystadenocarcinoma | 5 | DOID:5746 | 5 | true | 5 | cinnamomum ramulus | 5 | 24h | 5 | unknown | 5 | 64Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR32311068 | 5 | PRJNA1222386 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 25,352,427,200 | 5 | bulk | 5 | cervical lymph node | 3 | UBERON:0002429 | 5 | metastasis | 5 | NCI-H660 | 5 | prostate stem cell | 5 | CL:0002339 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | prostate small cell carcinoma | 5 | DOID:7141 | 5 | true | 5 | doxycycline | 5 | on treatment | 5 | unknown | 5 | 63Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=cervical lymph node |
SRR27533330 | 5 | PRJNA1064082 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 25,149,001,378 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | LNCaP-95 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | dmso | 5 | 24 hours | 5 | unknown | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=lymph node |
SRR15712480 | 5 | PRJNA760443 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 25,029,952,800 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | Dami | 5 | leucoblast | 5 | CL:0005003 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | erythroleukemia | 5 | DOID:0080916 | 5 | true | 5 | hmga1 kd | 5 | not applicable | 5 | progressive | 5 | 30Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=blood |
SRR21616124 | 5 | PRJNA878804 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 24,670,788,230 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | Kasumi-1 | 5 | blood cell | 5 | CL:0000081 | 5 | blood | 5 | UBERON:0000178 | 5 | acute myeloid leukemia | 5 | DOID:9119 | 5 | true | 5 | steady | 5 | not applicable | 5 | stable | 5 | 7Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR14678692 | 5 | PRJNA730556 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 24,400,528,895 | 5 | single_cell_droplet_like | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | XACHi009-A | 5 | neuron | 5 | CL:0000540 | 5 | brain | 3 | UBERON:0000955 | 5 | long QT syndrome 5 | 5 | DOID:0110647 | 5 | false | 5 | organoid | 5 | 8 weeks | 5 | unknown | 5 | 28Y | 5 | female | 5 | chinese | 5 | 3 | R-ANAT-003:organ=brain, biopsy_site=blood |
SRR8582932 | 5 | PRJNA522801 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 23,873,333,438 | 5 | bulk | 5 | pancreas | 5 | UBERON:0001264 | 5 | primary | 5 | Panc 03.27 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | pancreas | 5 | UBERON:0001264 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | gsk3368712 | 5 | on treatment | 5 | success | 5 | 65Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR23750277 | 5 | PRJNA942286 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 22,635,006,000 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | LA-N-1 | 5 | cell | 5 | CL:0000000 | 5 | adrenal gland | 3 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | 13 cis retinoic acid | 5 | 48 hours | 5 | unknown | 5 | 2Y | 5 | male | 5 | hispanic | 5 | 3 | R-ANAT-003:organ=adrenal gland, biopsy_site=bone marrow |
SRR21642415 | 5 | PRJNA882397 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 22,514,005,200 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | Calu-3 | 5 | epithelial cell | 5 | CL:0000066 | 5 | lung | 3 | UBERON:0002048 | 5 | lung adenocarcinoma | 5 | DOID:3910 | 5 | true | 5 | wu203204 | 5 | 24h | 5 | unknown | 5 | 25Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR13498849 | 5 | PRJNA693837 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 20,205,705,620 | 5 | bulk | 5 | blood | 3 | UBERON:0000178 | 5 | blood | 5 | HuT 78 | 5 | T cell | 5 | CL:0000084 | 5 | skin of body | 3 | UBERON:0002097 | 5 | Sezary's disease | 5 | DOID:8541 | 5 | true | 5 | vorinostat | 5 | 48 hours | 5 | unknown | 5 | 53Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=skin of body, biopsy_site=blood |
SRR30056814 | 5 | PRJNA1142507 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 19,266,599,632 | 5 | bulk | 5 | peripheral blood | 5 | UBERON:0000178 | 5 | blood | 5 | J-Lat 10.6 | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | childhood acute lymphocytic leukemia | 5 | DOID:0080144 | 5 | false | 5 | pma | 5 | 6 hours | 5 | unknown | 5 | 14Y | 5 | male | 5 | caucasian | 5 | 5 | null |
ERR12643018 | 5 | PRJEB72379 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 19,088,201,732 | 5 | bulk | 5 | peripheral blood | 5 | UBERON:0000178 | 5 | blood | 5 | HL-60/MX2 | 5 | peripheral blood lymphocyte | 5 | CL:4030030 | 5 | blood | 5 | UBERON:0000178 | 5 | adult acute monocytic leukemia | 5 | DOID:0080149 | 5 | true | 5 | siprkdc | 5 | 48 h post-transfection | 5 | unknown | 5 | 36Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR18021500 | 5 | PRJNA806948 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 18,628,109,523 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | NCI-H1299 | 5 | epithelial cell | 5 | CL:0000066 | 5 | lung | 3 | UBERON:0002048 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | 5-fluorouridine | 5 | unt treated | 5 | unknown | 5 | 43Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=lymph node |
SRR28462202 | 5 | PRJNA1092045 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 18,605,410,200 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | MJ | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | primary cutaneous T-cell non-Hodgkin lymphoma; non-Hodgkin lymphoma | 5 | DOID:0060061;DOID:0060060 | 5 | true | 5 | kpt-330 | 5 | 48 hours | 5 | unknown | 5 | 50Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR21616377 | 5 | PRJNA881612 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 18,559,701,430 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | MeWo | 5 | neoplastic cell | 5 | CL:0001063 | 5 | skin of body | 3 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | dmso | 5 | 24 hours | 5 | unknown | 5 | 78Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=skin of body, biopsy_site=lymph node |
SRR31367356 | 5 | PRJNA1186930 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 18,211,629,600 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | NCI-H820 | 5 | epithelial cell | 5 | CL:0000066 | 5 | lung | 3 | UBERON:0002048 | 5 | lung papillary adenocarcinoma | 5 | DOID:5588 | 5 | true | 5 | mock infected | 5 | 8 hours | 5 | unknown | 5 | 53Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=lymph node |
SRR18790488 | 5 | PRJNA389334 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 17,555,561,850 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | KOPT-K1 | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | acute lymphoblastic leukemia | 5 | DOID:9952 | 5 | true | 5 | i bet151 | 5 | 72 hours | 5 | unknown | 5 | 6Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR26844058 | 5 | PRJNA1040793 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 17,009,923,420 | 5 | bulk | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | JURL-MK1 | 5 | leucoblast | 5 | CL:0005003 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | chronic myelogenous leukemia, bcr-abl1 positive | 5 | DOID:8552 | 5 | true | 5 | nilotinib | 5 | 3 day | 5 | unknown | 5 | 73Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=peripheral blood |
SRR2105577 | 5 | PRJNA290103 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 16,788,836,908 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | MCF-7M | 5 | fibroblast of breast | 5 | CL:4006000 | 5 | breast | 3 | UBERON:0000310 | 5 | breast cancer | 5 | DOID:1612 | 5 | true | 5 | sirna hnrnp a1 | 5 | 72 hrs | 5 | unknown | 5 | 69Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=pleural effusion |
SRR31136640 | 5 | PRJNA1178617 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 16,402,366,200 | 5 | bulk | 5 | lymph node | 3 | UBERON:0000029 | 5 | metastasis | 5 | SK-MEL-24 | 5 | melanocyte | 5 | CL:0000148 | 5 | skin of body | 3 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | corin | 5 | 24h | 5 | unknown | 5 | 67Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=skin of body, biopsy_site=lymph node |
SRR29077844 | 5 | PRJNA1113183 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 16,129,425,779 | 5 | bulk | 5 | brain | 3 | UBERON:0000955 | 5 | metastasis | 5 | BeWo | 5 | epithelial cell | 5 | CL:0000066 | 5 | placenta | 3 | UBERON:0001987 | 5 | gestational choriocarcinoma | 5 | DOID:2025 | 5 | true | 5 | sivgll1 | 5 | 48hour | 5 | unknown | 5 | fetal | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=placenta, biopsy_site=brain |
SRR23948998 | 5 | PRJNA947965 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 16,068,594,400 | 5 | bulk | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | SET-2 | 5 | hematopoietic cell | 5 | CL:0000988 | 5 | hematopoietic tissue | 3 | UBERON:0012429 | 5 | acute megakaryocytic leukemia | 5 | DOID:8761 | 5 | true | 5 | dyrk1a ko | 5 | post | 5 | unknown | 5 | 71Y | 5 | female | 5 | japanese | 5 | 3 | R-ANAT-003:organ=hematopoietic tissue, biopsy_site=peripheral blood |
SRR14310908 | 5 | PRJNA724713 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 15,987,682,355 | 5 | bulk | 5 | liver | 3 | UBERON:0002107 | 5 | metastasis | 5 | MKN45 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | stomach | 3 | UBERON:0000945 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | acbp-s-se | 5 | treatment | 5 | unknown | 5 | 62Y | 5 | female | 5 | japanese | 5 | 3 | R-ANAT-003:organ=stomach, biopsy_site=liver |
SRR20648576 | 5 | PRJNA862346 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,732,559,850 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | CHL-1 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | skin of body | 3 | UBERON:0002097 | 5 | melanoma | 5 | DOID:1909 | 5 | true | 5 | prmt5 inhibition | 5 | 72 hours | 5 | unknown | 5 | 36Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=skin of body, biopsy_site=pleural effusion |
SRR23096580 | 5 | PRJNA924670 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,384,608,122 | 5 | bulk | 5 | pericardium | 3 | UBERON:0002407 | 5 | metastasis | 5 | MDA-MB-453 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | breast | 3 | UBERON:0000310 | 5 | breast adenocarcinoma | 5 | DOID:3458 | 5 | true | 5 | r1881 | 5 | on treatment | 5 | unknown | 5 | 48Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=pericardium |
SRR22756209 | 5 | PRJNA912752 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,373,194,000 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | SH-EP | 5 | neoplastic cell | 5 | CL:0001063 | 5 | adrenal gland | 3 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | myc-on | 5 | 24 hours | 5 | unknown | 5 | 4Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=adrenal gland, biopsy_site=bone marrow |
SRR34286225 | 5 | PRJNA1283515 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,299,099,876 | 5 | bulk | 5 | celiac axis lymph node | 3 | UBERON:0002508 | 5 | metastasis | 5 | L3.6pl | 5 | pancreatic ductal cell | 5 | CL:0002079 | 5 | pancreas | 3 | UBERON:0001264 | 5 | pancreatic adenosquamous carcinoma | 5 | DOID:3498 | 5 | true | 5 | dtag | 5 | 24h | 5 | unknown | 5 | 77y | 5 | female | 5 | african american | 5 | 3 | R-ANAT-003:organ=pancreas, biopsy_site=celiac axis lymph node |
SRR35826212 | 5 | PRJNA1344599 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,256,060,210 | 5 | bulk | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | Mono-Mac-1 | 5 | blood cell | 5 | CL:0000081 | 5 | hematopoietic tissue | 3 | UBERON:0012429 | 5 | adult acute monocytic leukemia | 5 | DOID:0080149 | 5 | true | 5 | dmso | 5 | 1h | 5 | unknown | 5 | 64Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=hematopoietic tissue, biopsy_site=peripheral blood |
SRR26846524 | 5 | PRJNA1040955 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,150,111,766 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | NCI-H526 | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | lung | 3 | UBERON:0002048 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | smarca2 4 degrader | 5 | 24h | 5 | unknown | 5 | 55Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=bone marrow |
SRR7182624 | 5 | PRJNA472029 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,117,349,349 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | HCC95 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | lung | 3 | UBERON:0002048 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | rnai | 5 | not treatment | 5 | unknown | 5 | 65Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR24773483 | 5 | PRJNA977982 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 15,075,900,600 | 5 | bulk | 5 | skin of body | 3 | UBERON:0002097 | 5 | metastasis | 5 | DU4475 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | breast | 3 | UBERON:0000310 | 5 | breast cancer | 5 | DOID:1612 | 5 | true | 5 | pf-9363 | 5 | 48 hr | 5 | unknown | 5 | 70Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=skin of body |
SRR27882496 | 5 | PRJNA1073579 | 5 | ILLUMINA | 5 | inverse rRNA | 5 | rna-seq | 5 | 14,985,779,372 | 5 | bulk | 5 | bone, vertebra | 3 | UBERON:0002412 | 5 | metastasis | 5 | VCaP | 5 | prostate stem cell | 5 | CL:0002339 | 5 | prostate gland | 3 | UBERON:0002367 | 5 | prostate carcinoma | 5 | DOID:10286 | 5 | true | 5 | cbpd | 5 | 24 hours | 5 | unknown | 5 | 59Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=prostate gland, biopsy_site=bone, vertebra |
SRR31931106 | 5 | PRJNA1208015 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 14,611,920,900 | 5 | bulk | 5 | lung | 5 | UBERON:0002048 | 5 | primary | 5 | NCI-H1672 | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | lung | 5 | UBERON:0002048 | 5 | lung small cell carcinoma | 5 | DOID:5409 | 5 | true | 5 | dna pk inhibition | 5 | 72 h | 5 | success | 5 | 58Y | 5 | male | 5 | caucasian | 5 | 5 | null |
ERR5968758 | 5 | PRJEB45270 | 5 | DNBSEQ | 5 | inverse rRNA | 5 | rna-seq | 5 | 14,562,287,000 | 5 | bulk | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | DND-41 | 5 | T cell | 5 | CL:0000084 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | childhood acute lymphocytic leukemia | 5 | DOID:0080144 | 5 | true | 5 | 5-azacytidine | 5 | 72 hours | 5 | unknown | 5 | 13Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=peripheral blood |
SRR33740934 | 5 | PRJNA1269060 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,551,357,042 | 5 | single_cell_unknown | 5 | peripheral blood | 5 | UBERON:0000178 | 5 | blood | 5 | THP-7 | 5 | T cell | 5 | CL:0000084 | 5 | blood | 5 | UBERON:0000178 | 5 | childhood t acute lymphoblastic leukemia | 5 | DOID:9119 | 5 | true | 5 | cc 885 | 5 | 12 hours | 5 | unknown | 5 | 13Y | 5 | female | 5 | japanese | 5 | 5 | null |
SRR24773453 | 5 | PRJNA977982 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,541,291,600 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | CAMA-1 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | breast | 3 | UBERON:0000310 | 5 | breast adenocarcinoma | 5 | DOID:3458 | 5 | true | 5 | pf-9363 | 5 | 48 hr | 5 | unknown | 5 | 51Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=breast, biopsy_site=pleural effusion |
SRR32395360 | 5 | PRJNA1225617 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,496,735,900 | 5 | bulk | 5 | skin | 3 | UBERON:0002097 | 5 | metastasis | 5 | iSLK | 5 | ecto-epithelial cell | 5 | CL:0002077 | 5 | kidney epithelium | 3 | UBERON:0004819 | 5 | clear cell renal cell carcinoma | 5 | DOID:4467 | 5 | true | 5 | ganciclovir | 5 | on treatment | 5 | unknown | 5 | 49Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=kidney epithelium, biopsy_site=skin |
SRR26846520 | 5 | PRJNA1040955 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,466,371,988 | 5 | bulk | 5 | pleural effusion | 3 | UBERON:0000175 | 5 | metastasis | 5 | NCI-H1048 | 5 | bone cell | 5 | CL:0001035 | 5 | lung | 3 | UBERON:0002048 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | smarca2 4 degrader | 5 | 24h | 5 | unknown | 5 | 53Y | 5 | female | 5 | african american | 5 | 3 | R-ANAT-003:organ=lung, biopsy_site=pleural effusion |
SRR26186004 | 5 | PRJNA1021137 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,432,532,415 | 5 | single_cell_unknown | 5 | lung | 5 | UBERON:0002048 | 5 | blood | 5 | A-549 | 5 | T cell | 5 | CL:0000084 | 5 | lung | 5 | UBERON:0002048 | 5 | lung adenocarcinoma | 5 | DOID:3910 | 5 | true | 5 | suv39h1-knockout | 5 | 28 | 5 | unknown | 5 | 58Y | 5 | male | 5 | caucasian | 5 | 5 | null |
ERR5968759 | 5 | PRJEB45270 | 5 | DNBSEQ | 5 | inverse rRNA | 5 | rna-seq | 5 | 14,392,326,000 | 5 | bulk | 5 | peripheral blood | 3 | UBERON:0000178 | 5 | blood | 5 | Jurkat E6.1 | 5 | T cell | 5 | CL:0000084 | 5 | bone marrow | 3 | UBERON:0002371 | 5 | childhood t acute lymphoblastic leukemia | 5 | DOID:5603 | 5 | true | 5 | 5-azacytidine | 5 | 72 hours | 5 | unknown | 5 | 14Y | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=bone marrow, biopsy_site=peripheral blood |
SRR16128002 | 5 | PRJNA767603 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,374,711,200 | 5 | bulk | 5 | brain | 3 | UBERON:0000955 | 5 | metastasis | 5 | JEG-3 | 5 | chorionic trophoblast cell | 5 | CL:0011101 | 5 | placenta | 3 | UBERON:0001987 | 5 | gestational choriocarcinoma | 5 | DOID:2025 | 5 | true | 5 | eps15 knockdown | 5 | treated | 5 | unknown | 5 | fetal | 5 | male | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=placenta, biopsy_site=brain |
SRR33293464 | 5 | PRJNA1254699 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 14,106,741,000 | 5 | bulk | 5 | arm, skin | 5 | UBERON:0002427 | 5 | metastasis | 5 | 451Lu-BR | 5 | melanocyte | 5 | CL:0000148 | 5 | skin of body | 5 | UBERON:0002097 | 5 | cutaneous melanoma | 5 | DOID:8923 | 5 | true | 5 | pufa fe3 | 5 | 36 h | 5 | unknown | 5 | 22Y | 5 | male | 5 | caucasian | 5 | 5 | null |
SRR5534874 | 5 | PRJNA386482 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 13,961,789,800 | 5 | bulk | 5 | bone marrow | 3 | UBERON:0002371 | 5 | metastasis | 5 | SH-SY5Y | 5 | neural crest derived neuroblast | 5 | CL:0002676 | 5 | adrenal gland | 3 | UBERON:0002369 | 5 | neuroblastoma | 5 | DOID:769 | 5 | true | 5 | sictl | 5 | 48h | 5 | unknown | 5 | 4Y | 5 | female | 5 | caucasian | 5 | 3 | R-ANAT-003:organ=adrenal gland, biopsy_site=bone marrow |
SRR14758853 | 5 | PRJNA735970 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 13,743,276,900 | 5 | bulk | 5 | urinary bladder | 5 | UBERON:0001255 | 5 | primary | 5 | KU-19-19 | 5 | neoplastic cell | 5 | CL:0001063 | 5 | urinary bladder | 5 | UBERON:0001255 | 5 | bladder carcinoma; urinary bladder cancer | 5 | DOID:4007;DOID:11054 | 5 | true | 5 | cpi-0209 | 5 | 4 days | 5 | success | 5 | 76Y | 5 | male | 5 | japanese | 5 | 5 | null |
SRR24828466 | 5 | PRJNA980201 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 13,729,414,800 | 5 | bulk | 5 | liver | 5 | UBERON:0002107 | 5 | metastasis | 5 | A6L | 5 | hepatocyte | 5 | CL:0000182 | 5 | liver | 5 | UBERON:0002107 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | sirna | 5 | 24 h | 5 | progressive | 5 | 57Y | 5 | male | 5 | unknown | 5 | 5 | null |
SRR13775746 | 5 | PRJNA704539 | 5 | ILLUMINA | 5 | other | 5 | rna-seq | 5 | 13,571,955,300 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | blood | 5 | Karpas-231 | 5 | B cell | 5 | CL:0000236 | 5 | blood | 5 | UBERON:0000178 | 5 | diffuse large B-cell lymphoma | 5 | DOID:0050745 | 5 | true | 5 | chidamide | 5 | on treatment | 5 | unknown | 5 | 71Y | 5 | female | 5 | caucasian | 5 | 5 | null |
SRR14653142 | 5 | PRJNA731027 | 5 | ILLUMINA | 5 | polyA | 5 | rna-seq | 5 | 13,555,347,765 | 5 | bulk | 5 | nasopharynx | 5 | UBERON:0001728 | 5 | metastasis | 5 | CNE-2 | 5 | nasopharyngeal epithelial cell | 5 | CL:1001573 | 5 | nasopharynx | 5 | UBERON:0001728 | 5 | cancer | 5 | DOID:162 | 5 | true | 5 | autophagy | 5 | 18h | 5 | unknown | 5 | 58Y | 5 | female | 5 | china: guangzhou | 5 | 5 | null |
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