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import os
from lib.utilities import serialize
from lib.data_helpers import data_utils
from lib.experiment_specs import study_config
def select_test_appcodes(mc):
"""
purpose: selects a set of appcodes whose data will be used to test the pipeline quickly. Specifically,
it selects 50 active appcodes (i.e. have use data in past 3 days) and 25 appcodes inactive appcodes
input: the clean master user df
"""
last_survey_complete = data_utils.get_last_survey()
code = study_config.surveys[last_survey_complete]["Code"]
print(f"\n Selecting test codes. last survey complete is {last_survey_complete}")
active_appcodes = list(mc.loc[(mc[f"{code}_Complete"]=="Complete")&(mc["ActiveStatus"]=="Normal"),"AppCode"])
inactive_appcodes = list(mc.loc[(mc[f"R_Complete"]!="Complete"),"AppCode"])
test_codes = {"AppCode":active_appcodes[50:100]+inactive_appcodes[25:50]}
serialize.save_pickle(test_codes, path = os.path.join("data","external","dropbox_confidential_test","TestCodes"),df_bool = False)
return test_codes
def save_test_df(df, path):
"""
subsets the df to include testcodes
Parameters
----------
df - any df that is about to get saved
path - the path to save the df (in the test data folders)
"""
# only subset the df if the run is not a test b/c during a test run, the file has already been subsetted!
config_user_dict = serialize.open_yaml("config_user.yaml")
if config_user_dict["local"]["test"] == False:
test_codes = serialize.open_pickle(os.path.join("data", "external", "dropbox_confidential_test", "TestCodes"), df_bool=False)
test_appcodes = test_codes["AppCode"]
df = df.loc[df["AppCode"].isin(test_appcodes)]
serialize.save_pickle(df,path)
print(df.dtypes)
try:
serialize.save_hdf(df, path)
except:
print("couldn't save hdf!") |