*! version 0.2.0 26feb2021 program define parallel_map * Intercept -clean- option cap syntax, clean [Verbose] if !c(rc) { parallel_map_clean, `verbose' exit } global pids // clean up cap noi parallel_map_inner `0' loc rc = c(rc) foreach pid of global pids { di as error " - closing process `pid'" cap noi prockill `pid' if (c(rc)) di as error " could not close process (already closed?)" } error `rc' end capture program drop parallel_map_clean program define parallel_map_clean syntax, [verbose] loc verbose = ("`verbose'" != "") if ("$LAST_PARALLEL_DIR" != "") { cap noi mata : unlink_folder("${LAST_PARALLEL_DIR}", `verbose') } end cap pr drop parallel_map_inner program define parallel_map_inner _on_colon_parse `0' loc 0 `s(before)' loc cmd `s(after)' syntax, VALues(numlist integer min=1 max=1000 >=1 <100000000) /// [ /// MAXprocesses(integer 0) /// COREs_per_process(integer 0) /// FORCE /// ID(integer 0) /// METHOD(string) /// STATA_path(string) /// TMP_path(string) /// PRograms(string) /// Verbose /// CLEAN /// Clean-up entire folder at the end (else need to run parallel_map_inner, clean) noLOGtable /// Show table with links to log-files ] loc verbose = ("`verbose'" != "") loc force = ("`force'" != "") loc clean = ("`clean'" != "") loc logtable = ("`logtable'" != "nologtable") loc max_processes `maxprocesses' if ("`method'" == "") { if (c(os)=="Windows") { loc method procexec } else { loc method shell } } _assert inlist("`method'", "shell", "procexec") loc method = strlower(c(os)) + "-" + "`method'" tempname f // File handle cap parallel _assert _rc!=199, msg(`"-parallel- is not installed; download it from {browse "http://github.com/gvegayon/parallel"}"') // -------------------------------------------------------------------------- // Parameters // -------------------------------------------------------------------------- * Delete last parallel instance ran parallel_map_clean * How many cores are available in total? loc total_cores : env SLURM_CPUS_ON_NODE if ("`total_cores'" == "") { qui parallel numprocessors loc total_cores = r(numprocessors) } * How many cores for each worker process? if (`cores_per_process' <= 0) loc cores_per_process = c(processors) * How many workers? if (`max_processes' <= 0) { loc max_processes = max(1, int(`total_cores' / `cores_per_process')) } * Adjust to available cores loc old_max_processes = `max_processes' if (`total_cores' < `max_processes' * `cores_per_process') & (!`force') { loc max_processes = max(1, int(`total_cores' / `cores_per_process')) } if (`verbose') di as text _n "{bf:Parallel information:}" if (`verbose') di as text " - Available cores {col 24}: {res}`total_cores'" if (`verbose') di as text " - Cores per process {col 24}: {res}`cores_per_process'" if (`verbose') di as text " - Number of processes {col 24}: {res}`max_processes'" if (`verbose' & `old_max_processes'>`max_processes') di as text " - Reduced from {res}`old_max_processes'{txt} processes as there are not {res}`old_max_processes'*`cores_per_process'{txt} available cores" if (`verbose' & `old_max_processes'>`max_processes') di as text " - To use more processes, use the {inp}force{txt} option, or adjust the {inp}cores(#){txt} option" if (`verbose') di as text " - Method {col 24}: {res}`method'" * Caller ID loc caller_id `id' if (`caller_id' <= 0) loc caller_id = runiformint(1, 1e9-1) loc padded_caller_id = string(`caller_id', "%09.0f") if (`verbose') di as text " - Caller ID {col 24}: {res}`padded_caller_id'" * Stata Path if ("`stata_path'" != "") { conf file "`stata_path'" } else { qui mata: st_local("error", strofreal(parallel_setstatapath("", 0))) _assert (!`error'), msg("Can not set Stata directory, try using -statapath()- option") rc(`error') loc stata_path = $PLL_STATA_PATH global PLL_STATA_PATH } if (`verbose') di as text " - Stata path {col 24}: {res}`stata_path'" * Temporary path if ("`tmp_path'" == "") loc tmp_path = c(tmpdir) * Workaround for inputs that don't end with "/" loc last_char = substr("`tmp_path'", strlen("`tmp_path'"), 1) if (!inlist("`last_char'", "/", "\")) loc tmp_path = "`tmp_path'`c(dirsep)'" if (`verbose') di as text " - Temporary folder {col 24}: {res}`tmp_path'" mata: st_local("ok", strofreal(direxists("`tmp_path'"))) _assert `ok', msg(`"Temporary folder {res}"`tmp_path'" {txt}does not exist"') loc parallel_dir = "`tmp_path'PARALLEL_`padded_caller_id'" if (`verbose') di as text " - Parallel folder {col 24}: {res}`parallel_dir'" global LAST_PARALLEL_DIR = "`parallel_dir'" // -------------------------------------------------------------------------- // Export programs // -------------------------------------------------------------------------- if ("`programs'" != "") { tempfile prog_log prog_include qui mata: parallel_export_programs("`prog_include'", "`programs'", "`prog_log'") } // -------------------------------------------------------------------------- // Write base files // -------------------------------------------------------------------------- * Create parallel folder if it doesn't exist cap mata: mkdir("`parallel_dir'", 1) // 1 makes it readable by everyone with access to the root folder * Write do-file qui findfile "parallel_map_template.do.ado" loc source "`r(fn)'" loc destination "`parallel_dir'`c(dirsep)'parallel_code.do" if (`verbose') di as text " - Do-file {col 24}: {res}`destination'" loc include_programs `""""' if ("`programs'" != "") loc include_programs `"`"include "`prog_include'" // `programs'"'"' loc from `"@include_programs @num_processors @working_path @personal @plus @caller_id @parallel_dir @command"' loc to `"`include_programs' `cores_per_process' "`c(pwd)'" "`c(sysdir_personal)'" "`c(sysdir_plus)'" `padded_caller_id' `parallel_dir' `"`cmd'"'"' // "' mata: filefilter("`source'", "`destination'", tokens(`"`from'"'), tokens(`"`to'"')) loc do_file "`destination'" if ("`method'" == "windows-shell") { * Write batch file loc batch_fn "`parallel_dir'`c(dirsep)'parallel_code.bat" if (`verbose') di as text " - Batch-file {col 24}: {res}`batch_fn'" qui file open `f' using "`batch_fn'", write text replace file write `f' `"pushd "`c(pwd)'""' _n file write `f' `"start /MAX /HIGH set STATATMP=`tmp_path'"' _n *file write `f' `""`stata_path'" /e /q do "`do_file'" %1 ^&exit "' _n file write `f' `""`stata_path'" do "`do_file'" %1 ^&exit "' _n file write `f' `"popd"' _n file write `f' `"exit"' _n file close `f' conf file "`batch_fn'" } // -------------------------------------------------------------------------- // Run processes // -------------------------------------------------------------------------- loc num_active 0 // Number of active worker processes assert (`num_active' < `max_processes') * PROCENV: * procenv get -> list all env vars * procenv get STATATMP * procenv set STATATMP=XYZ if ("`method'" == "windows-procexec") { scalar PROCEXEC_HIDDEN = 2 // >= 1 : Minimized ; ==2 : Completely hidden scalar PROCEXEC_ABOVE_NORMAL_PRIORITY = 0 procenv set STATATMP=`tmp_path' } global pids loc num_tasks 0 loc num_done 0 loc global_rc 0 foreach val of local values { loc ++num_tasks loc started`val' 0 loc done`val' 0 } if (`verbose') di as text " - Number of tasks{col 24}: {res}`num_tasks'" if (`verbose') di as text "" while (1) { * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * Stop when all tasks have been started and completed * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if (`num_done' == `num_tasks') continue, break * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * Launch new processes until num_active==max_processes * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ foreach val of local values { if (`started`val'') continue if (`num_active' == `max_processes') continue, break if (`verbose') di as text "Starting task `val'" loc started`val' 1 loc ++num_active loc rc`val' 0 // So it has a default in case it never launches/completes if ("`method'" == "windows-shell") { winexec "`batch_fn'" `val' } else if ("`method'" == "windows-procexec") { *di as error `"procexec "`do_file'" `val'"' *procexec "`do_file'" `val' procexec "`stata_path'" do "`do_file'" `val' loc pid`val' = r(pid) global pids $pids `pid`val'' } else if ("`method'" == "unix-shell") { * PROBLEM: * The first tells Stata to run in batch mode. Stata will execute the commands in filename.do and will automatically save the output in filename.log. * https://www.stata.com/support/faqs/unix/batch-mode/ shell "`stata_path'" -q do "`do_file'" `val' // & ???? * OR JUST USE XSTATA?? } else { di as error "Unsupported method: `method'" error 1000 } } * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * Check if some processes are done * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ foreach val of local values { if (!`started`val'' | `done`val'') continue * Check if the sentinel file exists loc padded_worker_id = string(`val', "%08.0f") loc sentinel "`parallel_dir'/`padded_worker_id'.txt" cap conf file "`sentinel'" if !c(rc) { loc ++num_done loc done`val' 1 file open `f' using "`sentinel'", read text file read `f' rc`val' if (`rc`val'') { di as error " - Task `val' failed (error code `rc`val'')" loc global_rc `rc`val'' } else { if (`verbose') di as text " - Task `val' completed (`num_done'/`num_tasks')" loc pid `pid`val'' global pids : list global(pids) - local(pid) } loc --num_active file close `f' cap erase "`sentinel'" continue } * Check if the process is not running anymore _assert ("`pid`val''" != ""), msg("PID IS EMPTY?") cap procwait `pid`val'' // returns error if process does not exist if (!c(rc)) { * The process does not exist anymore but no sentinel file exists * Maybe the filesystem just needs a bit of time to update, so we'll give it ten tics if ("`tics`val''" == "") { loc tics`val' 20 // 20*50ms = 1sec } else if (`tics`val''>0) { loc --tics`val' } else { assert `tics`val'' == 0 loc ++num_done loc done`val' 1 di as error " - Task `val' does not exist anymore (process id was `pid`val'')" loc global_rc 9999 loc --num_active * TODO: maybe move this to a separate routine/mata program to avoid duplication * <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< if (`logtable') { * TODO: Make it a proper table di as text _n "{hline 64}" foreach val of local values { loc padded_worker_id = string(`val', "%08.0f") loc log "`parallel_dir'/`padded_worker_id'.log" conf file "`log'" *ViewLog using "`log'" loc color = cond(`rc`val'', "err", "txt") di as text `"`padded_worker_id' | {`color'}`rc`val''{txt} | {stata `"type "`log'""':type log} | {stata `"view "`log'""':view log}"' } di as text "{hline 64}" _n } * >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> error 9999 } } } * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * Introduce some delay ... * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sleep 50 } * Cleanup if (`verbose') di as text "All tasks completed" if ("`method'" == "windows-procexec") { scalar drop PROCEXEC_HIDDEN scalar drop PROCEXEC_ABOVE_NORMAL_PRIORITY procenv set STATATMP=`c(tmpdir)' } if (`verbose') di // -------------------------------------------------------------------------- // Output log // -------------------------------------------------------------------------- if (`logtable') { * TODO: Make it a proper table di as text _n "{hline 64}" foreach val of local values { loc padded_worker_id = string(`val', "%08.0f") loc log "`parallel_dir'/`padded_worker_id'.log" conf file "`log'" *ViewLog using "`log'" loc color = cond(`rc`val'', "err", "txt") di as text `"`padded_worker_id' | {`color'}`rc`val''{txt} | {stata `"type "`log'""':type log} | {stata `"view "`log'""':view log}"' } di as text "{hline 64}" _n } if (`clean') { cap noi mata : unlink_folder("`parallel_dir'", `verbose') } // -------------------------------------------------------------------------- // Fail if there was at least one error // -------------------------------------------------------------------------- error `global_rc' end capture program drop ViewLog program define ViewLog syntax using di as result "{hline 80}" di as result %~80s "beginning of file -`using'-" di as result "{hline 80}" type `"`using'"' di as result "{hline 80}" di as result %~80s "end of file -`using'-" di as result "{hline 80}" end // -------------------------------------------------------------------------- // Mata section // -------------------------------------------------------------------------- include "ftools_type_aliases.mata", adopath mata: `Void' filefilter(`String' source, `String' dest, `StringRowVector' from, `StringRowVector' to) { `Integer' i, n `Integer' fh_in, fh_out `String' line, eol fh_in = fopen(source, "r") fh_out = fopen(dest, "w") eol = "" n = cols(from) assert(n==cols(to)) while ( (line = fget(fh_in) ) != J(0, 0, "") ) { for (i=1; i<=n; i++) { line = subinstr(line, from[i], to[i]) } fput(fh_out, line + eol) } fclose(fh_out) fclose(fh_in) } end