import os import sys import pandas as pd from lib.experiment_specs import study_config from lib.utilities import codebook from lib.data_helpers.confidential import Confidential class ManualChanges(): @staticmethod def manual_clean(df,survey,manual_changes_path): survey_code = study_config.surveys[survey]["Code"] appcode_changes = pd.read_excel(manual_changes_path, sheet_name="AppCodes").to_dict(orient='index') for index, value in appcode_changes.items(): if value["Old"][0] != "A": print("AppCodes must begin with 'A'") sys.exit() if value["Old"] not in list(df["AppCode"].unique()): print(f"Couldn't find old appcode {value['Old']}") else: df.loc[df["AppCode"] == value["Old"], "AppCode"] = value["New"] print(f"Replaced AppCode {value['Old']} with {value['New']}") manual_changes = pd.read_excel(manual_changes_path, sheet_name="General") man_c = manual_changes.to_dict(orient='index') survey_codes = [study_config.surveys[x]["Code"] + "_" for x in study_config.surveys] for key, value in man_c.items(): variable = value["Variable"] # Remove the survey specific code, change in survey data if the survey codes match (i.e. B_ is with Baseline) if variable.startswith(tuple(survey_codes)): prefix_code = variable.split("_", 1)[0] variable = variable.split("_", 1)[1] #if the prefix matches the survey's code we are cleaning if prefix_code == survey_code: df = ManualChanges.manual_replace(df,value,variable) # No Need to Modify Variable if the variable is a main column or a treatment column elif (variable in study_config.main_cols+study_config.embedded_main_cols) and (variable in df.columns): df = ManualChanges.manual_replace(df,value,variable) else: continue return df @staticmethod def manual_replace(df, value, variable): if variable not in df.columns: return df else: try: if value["AppCode"] not in list(df["AppCode"].unique()): print(f"Manual change did not occur for {value['AppCode']}'s {variable} to {value['NewValue']} b/c appcode was not found") else: df.loc[df["AppCode"] == value["AppCode"], variable] = value["NewValue"] print(f"Changed {variable} for {value['AppCode']} to {value['NewValue']}") except: print(f"{variable} does not seem to be in dataframe") return df