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f8bd983
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1 Parent(s): 10da810

add code refinement

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  1. Code-Code/code-refinement/code/bleu.py +134 -0
  2. Code-Code/code-refinement/code/eval.sh +17 -0
  3. Code-Code/code-refinement/code/evaluate.sh +3 -0
  4. Code-Code/code-refinement/code/evaluator.py +35 -0
  5. Code-Code/code-refinement/code/model.py +223 -0
  6. Code-Code/code-refinement/code/run.py +575 -0
  7. Code-Code/code-refinement/code/train.sh +22 -0
  8. Code-Code/code-refinement/dataset.zip +3 -0
  9. Code-Code/code-refinement/model/small/epoch_1/subject_model.pth +3 -0
  10. Code-Code/code-refinement/model/small/epoch_10/subject_model.pth +3 -0
  11. Code-Code/code-refinement/model/small/epoch_11/subject_model.pth +3 -0
  12. Code-Code/code-refinement/model/small/epoch_12/subject_model.pth +3 -0
  13. Code-Code/code-refinement/model/small/epoch_13/subject_model.pth +3 -0
  14. Code-Code/code-refinement/model/small/epoch_14/subject_model.pth +3 -0
  15. Code-Code/code-refinement/model/small/epoch_15/subject_model.pth +3 -0
  16. Code-Code/code-refinement/model/small/epoch_16/subject_model.pth +3 -0
  17. Code-Code/code-refinement/model/small/epoch_17/subject_model.pth +3 -0
  18. Code-Code/code-refinement/model/small/epoch_18/subject_model.pth +3 -0
  19. Code-Code/code-refinement/model/small/epoch_19/subject_model.pth +3 -0
  20. Code-Code/code-refinement/model/small/epoch_2/subject_model.pth +3 -0
  21. Code-Code/code-refinement/model/small/epoch_20/subject_model.pth +3 -0
  22. Code-Code/code-refinement/model/small/epoch_21/subject_model.pth +3 -0
  23. Code-Code/code-refinement/model/small/epoch_22/subject_model.pth +3 -0
  24. Code-Code/code-refinement/model/small/epoch_23/subject_model.pth +3 -0
  25. Code-Code/code-refinement/model/small/epoch_24/subject_model.pth +3 -0
  26. Code-Code/code-refinement/model/small/epoch_25/subject_model.pth +3 -0
  27. Code-Code/code-refinement/model/small/epoch_26/subject_model.pth +3 -0
  28. Code-Code/code-refinement/model/small/epoch_27/subject_model.pth +3 -0
  29. Code-Code/code-refinement/model/small/epoch_28/subject_model.pth +3 -0
  30. Code-Code/code-refinement/model/small/epoch_29/subject_model.pth +3 -0
  31. Code-Code/code-refinement/model/small/epoch_3/subject_model.pth +3 -0
  32. Code-Code/code-refinement/model/small/epoch_30/subject_model.pth +3 -0
  33. Code-Code/code-refinement/model/small/epoch_31/subject_model.pth +3 -0
  34. Code-Code/code-refinement/model/small/epoch_32/subject_model.pth +3 -0
  35. Code-Code/code-refinement/model/small/epoch_33/subject_model.pth +3 -0
  36. Code-Code/code-refinement/model/small/epoch_34/subject_model.pth +3 -0
  37. Code-Code/code-refinement/model/small/epoch_4/subject_model.pth +3 -0
  38. Code-Code/code-refinement/model/small/epoch_5/subject_model.pth +3 -0
  39. Code-Code/code-refinement/model/small/epoch_6/subject_model.pth +3 -0
  40. Code-Code/code-refinement/model/small/epoch_7/subject_model.pth +3 -0
  41. Code-Code/code-refinement/model/small/epoch_8/subject_model.pth +3 -0
  42. Code-Code/code-refinement/model/small/epoch_9/subject_model.pth +3 -0
Code-Code/code-refinement/code/bleu.py ADDED
@@ -0,0 +1,134 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Copyright 2017 Google Inc. All Rights Reserved.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+ # ==============================================================================
15
+
16
+ """Python implementation of BLEU and smooth-BLEU.
17
+
18
+ This module provides a Python implementation of BLEU and smooth-BLEU.
19
+ Smooth BLEU is computed following the method outlined in the paper:
20
+ Chin-Yew Lin, Franz Josef Och. ORANGE: a method for evaluating automatic
21
+ evaluation metrics for machine translation. COLING 2004.
22
+ """
23
+
24
+ import collections
25
+ import math
26
+
27
+
28
+ def _get_ngrams(segment, max_order):
29
+ """Extracts all n-grams upto a given maximum order from an input segment.
30
+
31
+ Args:
32
+ segment: text segment from which n-grams will be extracted.
33
+ max_order: maximum length in tokens of the n-grams returned by this
34
+ methods.
35
+
36
+ Returns:
37
+ The Counter containing all n-grams upto max_order in segment
38
+ with a count of how many times each n-gram occurred.
39
+ """
40
+ ngram_counts = collections.Counter()
41
+ for order in range(1, max_order + 1):
42
+ for i in range(0, len(segment) - order + 1):
43
+ ngram = tuple(segment[i:i+order])
44
+ ngram_counts[ngram] += 1
45
+ return ngram_counts
46
+
47
+
48
+ def compute_bleu(reference_corpus, translation_corpus, max_order=4,
49
+ smooth=False):
50
+ """Computes BLEU score of translated segments against one or more references.
51
+
52
+ Args:
53
+ reference_corpus: list of lists of references for each translation. Each
54
+ reference should be tokenized into a list of tokens.
55
+ translation_corpus: list of translations to score. Each translation
56
+ should be tokenized into a list of tokens.
57
+ max_order: Maximum n-gram order to use when computing BLEU score.
58
+ smooth: Whether or not to apply Lin et al. 2004 smoothing.
59
+
60
+ Returns:
61
+ 3-Tuple with the BLEU score, n-gram precisions, geometric mean of n-gram
62
+ precisions and brevity penalty.
63
+ """
64
+ matches_by_order = [0] * max_order
65
+ possible_matches_by_order = [0] * max_order
66
+ reference_length = 0
67
+ translation_length = 0
68
+ for (references, translation) in zip(reference_corpus,
69
+ translation_corpus):
70
+ reference_length += min(len(r) for r in references)
71
+ translation_length += len(translation)
72
+
73
+ merged_ref_ngram_counts = collections.Counter()
74
+ for reference in references:
75
+ merged_ref_ngram_counts |= _get_ngrams(reference, max_order)
76
+ translation_ngram_counts = _get_ngrams(translation, max_order)
77
+ overlap = translation_ngram_counts & merged_ref_ngram_counts
78
+ for ngram in overlap:
79
+ matches_by_order[len(ngram)-1] += overlap[ngram]
80
+ for order in range(1, max_order+1):
81
+ possible_matches = len(translation) - order + 1
82
+ if possible_matches > 0:
83
+ possible_matches_by_order[order-1] += possible_matches
84
+
85
+ precisions = [0] * max_order
86
+ for i in range(0, max_order):
87
+ if smooth:
88
+ precisions[i] = ((matches_by_order[i] + 1.) /
89
+ (possible_matches_by_order[i] + 1.))
90
+ else:
91
+ if possible_matches_by_order[i] > 0:
92
+ precisions[i] = (float(matches_by_order[i]) /
93
+ possible_matches_by_order[i])
94
+ else:
95
+ precisions[i] = 0.0
96
+
97
+ if min(precisions) > 0:
98
+ p_log_sum = sum((1. / max_order) * math.log(p) for p in precisions)
99
+ geo_mean = math.exp(p_log_sum)
100
+ else:
101
+ geo_mean = 0
102
+
103
+ ratio = float(translation_length) / reference_length
104
+
105
+ if ratio > 1.0:
106
+ bp = 1.
107
+ else:
108
+ bp = math.exp(1 - 1. / ratio)
109
+
110
+ bleu = geo_mean * bp
111
+
112
+ return (bleu, precisions, bp, ratio, translation_length, reference_length)
113
+
114
+
115
+ def _bleu(ref_file, trans_file, subword_option=None):
116
+ max_order = 4
117
+ smooth = True
118
+ ref_files = [ref_file]
119
+ reference_text = []
120
+ for reference_filename in ref_files:
121
+ with open(reference_filename) as fh:
122
+ reference_text.append(fh.readlines())
123
+ per_segment_references = []
124
+ for references in zip(*reference_text):
125
+ reference_list = []
126
+ for reference in references:
127
+ reference_list.append(reference.strip().split())
128
+ per_segment_references.append(reference_list)
129
+ translations = []
130
+ with open(trans_file) as fh:
131
+ for line in fh:
132
+ translations.append(line.strip().split())
133
+ bleu_score, _, _, _, _, _ = compute_bleu(per_segment_references, translations, max_order, smooth)
134
+ return round(100 * bleu_score,2)
Code-Code/code-refinement/code/eval.sh ADDED
@@ -0,0 +1,17 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ pretrained_model=microsoft/codebert-base
2
+ output_dir=../model
3
+ data_size=small
4
+
5
+ CUDA_VISIBLE_DEVICES=1 python run.py \
6
+ --do_test \
7
+ --model_type roberta \
8
+ --model_name_or_path $pretrained_model \
9
+ --config_name roberta-base \
10
+ --tokenizer_name roberta-base \
11
+ --load_model_path $output_dir/epoch_34/subject_model.pth \
12
+ --dev_filename ../data/$data_size/valid.buggy-fixed.buggy,../data/$data_size/valid.buggy-fixed.fixed \
13
+ --output_dir $output_dir \
14
+ --max_source_length 256 \
15
+ --max_target_length 256 \
16
+ --beam_size 5 \
17
+ --eval_batch_size 16
Code-Code/code-refinement/code/evaluate.sh ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ python evaluator.py \
2
+ -ref ../data/small/valid.buggy-fixed.fixed \
3
+ -pre ../model/test_0.output
Code-Code/code-refinement/code/evaluator.py ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Copyright (c) Microsoft Corporation.
2
+ # Licensed under the MIT license.
3
+ import logging
4
+ import sys
5
+
6
+ from bleu import _bleu
7
+
8
+ def main():
9
+ import argparse
10
+ parser = argparse.ArgumentParser(description='Evaluate leaderboard predictions for BigCloneBench dataset.')
11
+ parser.add_argument('--references', '-ref',help="filename of the labels, in txt format.")
12
+ parser.add_argument('--predictions', '-pre',help="filename of the leaderboard predictions, in txt format.")
13
+
14
+ args = parser.parse_args()
15
+
16
+ refs = [x.strip() for x in open(args.references, 'r', encoding='utf-8').readlines()]
17
+ pres = [x.strip() for x in open(args.predictions, 'r', encoding='utf-8').readlines()]
18
+
19
+ assert len(refs) == len(pres)
20
+
21
+ length = len(refs)
22
+ count = 0
23
+ for i in range(length):
24
+ r = refs[i]
25
+ p = pres[i]
26
+ if r == p:
27
+ count += 1
28
+ acc = round(count/length*100, 2)
29
+
30
+ bleu_score = round(_bleu(args.references, args.predictions),2)
31
+
32
+ print('BLEU:', bleu_score, '; Acc:', acc)
33
+
34
+ if __name__ == '__main__':
35
+ main()
Code-Code/code-refinement/code/model.py ADDED
@@ -0,0 +1,223 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Copyright (c) Microsoft Corporation.
2
+ # Licensed under the MIT license.
3
+
4
+ import torch
5
+ import torch.nn as nn
6
+ import torch
7
+ from torch.autograd import Variable
8
+ import copy
9
+ class Seq2Seq(nn.Module):
10
+ """
11
+ Build Seqence-to-Sequence.
12
+
13
+ Parameters:
14
+
15
+ * `encoder`- encoder of seq2seq model. e.g. roberta
16
+ * `decoder`- decoder of seq2seq model. e.g. transformer
17
+ * `config`- configuration of encoder model.
18
+ * `beam_size`- beam size for beam search.
19
+ * `max_length`- max length of target for beam search.
20
+ * `sos_id`- start of symbol ids in target for beam search.
21
+ * `eos_id`- end of symbol ids in target for beam search.
22
+ """
23
+ def __init__(self, encoder,decoder,config,beam_size=None,max_length=None,sos_id=None,eos_id=None):
24
+ super(Seq2Seq, self).__init__()
25
+ self.encoder = encoder
26
+ self.decoder=decoder
27
+ self.config=config
28
+ self.register_buffer("bias", torch.tril(torch.ones(2048, 2048)))
29
+ self.dense = nn.Linear(config.hidden_size, config.hidden_size)
30
+ self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
31
+ self.lsm = nn.LogSoftmax(dim=-1)
32
+ self.tie_weights()
33
+
34
+ self.beam_size=beam_size
35
+ self.max_length=max_length
36
+ self.sos_id=sos_id
37
+ self.eos_id=eos_id
38
+
39
+ def _tie_or_clone_weights(self, first_module, second_module):
40
+ """ Tie or clone module weights depending of weither we are using TorchScript or not
41
+ """
42
+ if self.config.torchscript:
43
+ first_module.weight = nn.Parameter(second_module.weight.clone())
44
+ else:
45
+ first_module.weight = second_module.weight
46
+
47
+ def tie_weights(self):
48
+ """ Make sure we are sharing the input and output embeddings.
49
+ Export to TorchScript can't handle parameter sharing so we are cloning them instead.
50
+ """
51
+ self._tie_or_clone_weights(self.lm_head,
52
+ self.encoder.embeddings.word_embeddings)
53
+
54
+ def forward(self, source_ids=None,source_mask=None,target_ids=None,target_mask=None,args=None, return_vec=None):
55
+ outputs = self.encoder(source_ids, attention_mask=source_mask)
56
+ if return_vec:
57
+ return outputs.pooler_output
58
+
59
+ encoder_output = outputs[0].permute([1,0,2]).contiguous()
60
+
61
+ if target_ids is not None:
62
+ attn_mask=-1e4 *(1-self.bias[:target_ids.shape[1],:target_ids.shape[1]])
63
+ tgt_embeddings = self.encoder.embeddings(target_ids).permute([1,0,2]).contiguous()
64
+ out = self.decoder(tgt_embeddings,encoder_output,tgt_mask=attn_mask,memory_key_padding_mask=(1-source_mask).bool())
65
+ hidden_states = torch.tanh(self.dense(out)).permute([1,0,2]).contiguous()
66
+ lm_logits = self.lm_head(hidden_states)
67
+ # Shift so that tokens < n predict n
68
+ active_loss = target_mask[..., 1:].ne(0).view(-1) == 1
69
+ shift_logits = lm_logits[..., :-1, :].contiguous()
70
+ shift_labels = target_ids[..., 1:].contiguous()
71
+ # Flatten the tokens
72
+ loss_fct = nn.CrossEntropyLoss(ignore_index=-1)
73
+ loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1))[active_loss],
74
+ shift_labels.view(-1)[active_loss])
75
+
76
+ outputs = loss,loss*active_loss.sum(),active_loss.sum()
77
+ return outputs
78
+ else:
79
+ #Predict
80
+ preds=[]
81
+ zero=torch.cuda.LongTensor(1).fill_(0)
82
+ for i in range(source_ids.shape[0]):
83
+ context=encoder_output[:,i:i+1]
84
+ context_mask=source_mask[i:i+1,:]
85
+ beam = Beam(self.beam_size,self.sos_id,self.eos_id)
86
+ input_ids=beam.getCurrentState()
87
+ context=context.repeat(1, self.beam_size,1)
88
+ context_mask=context_mask.repeat(self.beam_size,1)
89
+ for _ in range(self.max_length):
90
+ if beam.done():
91
+ break
92
+ attn_mask=-1e4 *(1-self.bias[:input_ids.shape[1],:input_ids.shape[1]])
93
+ tgt_embeddings = self.encoder.embeddings(input_ids).permute([1,0,2]).contiguous()
94
+ out = self.decoder(tgt_embeddings,context,tgt_mask=attn_mask,memory_key_padding_mask=(1-context_mask).bool())
95
+ out = torch.tanh(self.dense(out))
96
+ hidden_states=out.permute([1,0,2]).contiguous()[:,-1,:]
97
+ out = self.lsm(self.lm_head(hidden_states)).data
98
+ beam.advance(out)
99
+ input_ids.data.copy_(input_ids.data.index_select(0, beam.getCurrentOrigin()))
100
+ input_ids=torch.cat((input_ids,beam.getCurrentState()),-1)
101
+ hyp= beam.getHyp(beam.getFinal())
102
+ pred=beam.buildTargetTokens(hyp)[:self.beam_size]
103
+ pred=[torch.cat([x.view(-1) for x in p]+[zero]*(self.max_length-len(p))).view(1,-1) for p in pred]
104
+ preds.append(torch.cat(pred,0).unsqueeze(0))
105
+
106
+ preds=torch.cat(preds,0)
107
+ return preds
108
+
109
+
110
+
111
+ class Beam(object):
112
+ def __init__(self, size,sos,eos):
113
+ self.size = size
114
+ self.tt = torch.cuda
115
+ # The score for each translation on the beam.
116
+ self.scores = self.tt.FloatTensor(size).zero_()
117
+ # The backpointers at each time-step.
118
+ self.prevKs = []
119
+ # The outputs at each time-step.
120
+ self.nextYs = [self.tt.LongTensor(size)
121
+ .fill_(0)]
122
+ self.nextYs[0][0] = sos
123
+ # Has EOS topped the beam yet.
124
+ self._eos = eos
125
+ self.eosTop = False
126
+ # Time and k pair for finished.
127
+ self.finished = []
128
+
129
+ def getCurrentState(self):
130
+ "Get the outputs for the current timestep."
131
+ batch = self.tt.LongTensor(self.nextYs[-1]).view(-1, 1)
132
+ return batch
133
+
134
+ def getCurrentOrigin(self):
135
+ "Get the backpointers for the current timestep."
136
+ return self.prevKs[-1]
137
+
138
+ def advance(self, wordLk):
139
+ """
140
+ Given prob over words for every last beam `wordLk` and attention
141
+ `attnOut`: Compute and update the beam search.
142
+
143
+ Parameters:
144
+
145
+ * `wordLk`- probs of advancing from the last step (K x words)
146
+ * `attnOut`- attention at the last step
147
+
148
+ Returns: True if beam search is complete.
149
+ """
150
+ numWords = wordLk.size(1)
151
+
152
+ # Sum the previous scores.
153
+ if len(self.prevKs) > 0:
154
+ beamLk = wordLk + self.scores.unsqueeze(1).expand_as(wordLk)
155
+
156
+ # Don't let EOS have children.
157
+ for i in range(self.nextYs[-1].size(0)):
158
+ if self.nextYs[-1][i] == self._eos:
159
+ beamLk[i] = -1e20
160
+ else:
161
+ beamLk = wordLk[0]
162
+ flatBeamLk = beamLk.view(-1)
163
+ bestScores, bestScoresId = flatBeamLk.topk(self.size, 0, True, True)
164
+
165
+ self.scores = bestScores
166
+
167
+ # bestScoresId is flattened beam x word array, so calculate which
168
+ # word and beam each score came from
169
+ prevK = bestScoresId // numWords
170
+ self.prevKs.append(prevK)
171
+ self.nextYs.append((bestScoresId - prevK * numWords))
172
+
173
+
174
+ for i in range(self.nextYs[-1].size(0)):
175
+ if self.nextYs[-1][i] == self._eos:
176
+ s = self.scores[i]
177
+ self.finished.append((s, len(self.nextYs) - 1, i))
178
+
179
+ # End condition is when top-of-beam is EOS and no global score.
180
+ if self.nextYs[-1][0] == self._eos:
181
+ self.eosTop = True
182
+
183
+ def done(self):
184
+ return self.eosTop and len(self.finished) >=self.size
185
+
186
+ def getFinal(self):
187
+ if len(self.finished) == 0:
188
+ self.finished.append((self.scores[0], len(self.nextYs) - 1, 0))
189
+ self.finished.sort(key=lambda a: -a[0])
190
+ if len(self.finished) != self.size:
191
+ unfinished=[]
192
+ for i in range(self.nextYs[-1].size(0)):
193
+ if self.nextYs[-1][i] != self._eos:
194
+ s = self.scores[i]
195
+ unfinished.append((s, len(self.nextYs) - 1, i))
196
+ unfinished.sort(key=lambda a: -a[0])
197
+ self.finished+=unfinished[:self.size-len(self.finished)]
198
+ return self.finished[:self.size]
199
+
200
+ def getHyp(self, beam_res):
201
+ """
202
+ Walk back to construct the full hypothesis.
203
+ """
204
+ hyps=[]
205
+ for _,timestep, k in beam_res:
206
+ hyp = []
207
+ for j in range(len(self.prevKs[:timestep]) - 1, -1, -1):
208
+ hyp.append(self.nextYs[j+1][k])
209
+ k = self.prevKs[j][k]
210
+ hyps.append(hyp[::-1])
211
+ return hyps
212
+
213
+ def buildTargetTokens(self, preds):
214
+ sentence=[]
215
+ for pred in preds:
216
+ tokens = []
217
+ for tok in pred:
218
+ if tok==self._eos:
219
+ break
220
+ tokens.append(tok)
221
+ sentence.append(tokens)
222
+ return sentence
223
+
Code-Code/code-refinement/code/run.py ADDED
@@ -0,0 +1,575 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # coding=utf-8
2
+ # Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
3
+ # Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
4
+ #
5
+ # Licensed under the Apache License, Version 2.0 (the "License");
6
+ # you may not use this file except in compliance with the License.
7
+ # You may obtain a copy of the License at
8
+ #
9
+ # http://www.apache.org/licenses/LICENSE-2.0
10
+ #
11
+ # Unless required by applicable law or agreed to in writing, software
12
+ # distributed under the License is distributed on an "AS IS" BASIS,
13
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14
+ # See the License for the specific language governing permissions and
15
+ # limitations under the License.
16
+ """
17
+ Fine-tuning the library models for language modeling on a text file (GPT, GPT-2, BERT, RoBERTa).
18
+ GPT and GPT-2 are fine-tuned using a causal language modeling (CLM) loss while BERT and RoBERTa are fine-tuned
19
+ using a masked language modeling (MLM) loss.
20
+ """
21
+
22
+ from __future__ import absolute_import
23
+ import os
24
+ import sys
25
+ import pickle
26
+ import torch
27
+ import json
28
+ import random
29
+ import logging
30
+ import argparse
31
+ import numpy as np
32
+ from io import open
33
+ from itertools import cycle
34
+ import torch.nn as nn
35
+ from model import Seq2Seq
36
+ from tqdm import tqdm, trange
37
+ from bleu import _bleu
38
+ from torch.utils.data import DataLoader, Dataset, SequentialSampler, RandomSampler,TensorDataset
39
+ from torch.utils.data.distributed import DistributedSampler
40
+ from transformers import (WEIGHTS_NAME, AdamW, get_linear_schedule_with_warmup,
41
+ RobertaConfig, RobertaModel, RobertaTokenizer)
42
+ MODEL_CLASSES = {'roberta': (RobertaConfig, RobertaModel, RobertaTokenizer)}
43
+
44
+ logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s - %(message)s',
45
+ datefmt = '%m/%d/%Y %H:%M:%S',
46
+ level = logging.INFO)
47
+ logger = logging.getLogger(__name__)
48
+
49
+ class Example(object):
50
+ """A single training/test example."""
51
+ def __init__(self,
52
+ idx,
53
+ source,
54
+ target,
55
+ ):
56
+ self.idx = idx
57
+ self.source = source
58
+ self.target = target
59
+
60
+ # def read_examples(filename):
61
+ # """Read examples from filename."""
62
+ # examples=[]
63
+ # with open(filename,encoding="utf-8") as f:
64
+ # for idx,js in enumerate(json.load(f)):
65
+ # source=' '.join(js['old_comment_tokens'])
66
+ # target=' '.join(js['new_comment_tokens'])
67
+ # examples.append(
68
+ # Example(
69
+ # idx = idx,
70
+ # source=source,
71
+ # target=target,
72
+ # )
73
+ # )
74
+ # return examples
75
+ def read_examples(filename):
76
+ """Read examples from filename."""
77
+ examples=[]
78
+ assert len(filename.split(','))==2
79
+ src_filename = filename.split(',')[0]
80
+ trg_filename = filename.split(',')[1]
81
+ idx = 0
82
+ with open(src_filename) as f1,open(trg_filename) as f2:
83
+ for line1,line2 in zip(f1,f2):
84
+ examples.append(
85
+ Example(
86
+ idx = idx,
87
+ source=line1.strip(),
88
+ target=line2.strip(),
89
+ )
90
+ )
91
+ idx+=1
92
+ return examples
93
+
94
+ class InputFeatures(object):
95
+ """A single training/test features for a example."""
96
+ def __init__(self,
97
+ example_id,
98
+ source_ids,
99
+ target_ids,
100
+ source_mask,
101
+ target_mask,
102
+
103
+ ):
104
+ self.example_id = example_id
105
+ self.source_ids = source_ids
106
+ self.target_ids = target_ids
107
+ self.source_mask = source_mask
108
+ self.target_mask = target_mask
109
+
110
+
111
+
112
+ def convert_examples_to_features(examples, tokenizer, args,stage=None):
113
+ features = []
114
+ for example_index, example in enumerate(examples):
115
+ #source
116
+ source_tokens = tokenizer.tokenize(example.source)[:args.max_source_length-2]
117
+ source_tokens =[tokenizer.cls_token]+source_tokens+[tokenizer.sep_token]
118
+ source_ids = tokenizer.convert_tokens_to_ids(source_tokens)
119
+ source_mask = [1] * (len(source_tokens))
120
+ padding_length = args.max_source_length - len(source_ids)
121
+ source_ids+=[tokenizer.pad_token_id]*padding_length
122
+ source_mask+=[0]*padding_length
123
+
124
+ #target
125
+ if stage=="test":
126
+ target_tokens = tokenizer.tokenize("None")
127
+ else:
128
+ target_tokens = tokenizer.tokenize(example.target)[:args.max_target_length-2]
129
+ target_tokens = [tokenizer.cls_token]+target_tokens+[tokenizer.sep_token]
130
+ target_ids = tokenizer.convert_tokens_to_ids(target_tokens)
131
+ target_mask = [1] *len(target_ids)
132
+ padding_length = args.max_target_length - len(target_ids)
133
+ target_ids+=[tokenizer.pad_token_id]*padding_length
134
+ target_mask+=[0]*padding_length
135
+
136
+ if example_index < 5:
137
+ if stage=='train':
138
+ logger.info("*** Example ***")
139
+ logger.info("idx: {}".format(example.idx))
140
+
141
+ logger.info("source_tokens: {}".format([x.replace('\u0120','_') for x in source_tokens]))
142
+ logger.info("source_ids: {}".format(' '.join(map(str, source_ids))))
143
+ logger.info("source_mask: {}".format(' '.join(map(str, source_mask))))
144
+
145
+ logger.info("target_tokens: {}".format([x.replace('\u0120','_') for x in target_tokens]))
146
+ logger.info("target_ids: {}".format(' '.join(map(str, target_ids))))
147
+ logger.info("target_mask: {}".format(' '.join(map(str, target_mask))))
148
+
149
+ features.append(
150
+ InputFeatures(
151
+ example_index,
152
+ source_ids,
153
+ target_ids,
154
+ source_mask,
155
+ target_mask,
156
+ )
157
+ )
158
+ return features
159
+
160
+
161
+ def _truncate_seq_pair(tokens_a, tokens_b,tokens_c, max_length):
162
+ """Truncates a sequence pair in place to the maximum length."""
163
+
164
+ # This is a simple heuristic which will always truncate the longer sequence
165
+ # one token at a time. This makes more sense than truncating an equal percent
166
+ # of tokens from each, since if one sequence is very short then each token
167
+ # that's truncated likely contains more information than a longer sequence.
168
+
169
+ while True:
170
+ total_length = len(tokens_a) + len(tokens_b)+len(tokens_c)
171
+ if total_length <= max_length:
172
+ break
173
+ if len(tokens_a) >= len(tokens_b) and len(tokens_a)>=len(tokens_c):
174
+ tokens_a.pop()
175
+ elif len(tokens_b) >= len(tokens_a) and len(tokens_b)>=len(tokens_c):
176
+ tokens_b.pop()
177
+ else:
178
+ tokens_c.pop()
179
+
180
+ def set_seed(args):
181
+ """set random seed."""
182
+ random.seed(args.seed)
183
+ np.random.seed(args.seed)
184
+ torch.manual_seed(args.seed)
185
+ if args.n_gpu > 0:
186
+ torch.cuda.manual_seed_all(args.seed)
187
+
188
+ def main():
189
+ parser = argparse.ArgumentParser()
190
+
191
+ ## Required parameters
192
+ parser.add_argument("--model_type", default=None, type=str, required=True,
193
+ help="Model type: e.g. roberta")
194
+ parser.add_argument("--model_name_or_path", default=None, type=str, required=True,
195
+ help="Path to pre-trained model: e.g. roberta-base" )
196
+ parser.add_argument("--tokenizer_name", default="", required=True,
197
+ help="Pretrained tokenizer name or path if not the same as model_name")
198
+ parser.add_argument("--output_dir", default=None, type=str, required=True,
199
+ help="The output directory where the model predictions and checkpoints will be written.")
200
+ parser.add_argument("--load_model_path", default=None, type=str,
201
+ help="Path to trained model: Should contain the .bin files" )
202
+ ## Other parameters
203
+ parser.add_argument("--train_filename", default=None, type=str,
204
+ help="The train filenames (source and target files).")
205
+ parser.add_argument("--dev_filename", default=None, type=str,
206
+ help="The dev filename. (source and target files).")
207
+ parser.add_argument("--test_filename", default=None, type=str,
208
+ help="The test filename. (source and target files).")
209
+
210
+ parser.add_argument("--config_name", default="", type=str,
211
+ help="Pretrained config name or path if not the same as model_name")
212
+
213
+ parser.add_argument("--max_source_length", default=64, type=int,
214
+ help="The maximum total source sequence length after tokenization. Sequences longer "
215
+ "than this will be truncated, sequences shorter will be padded.")
216
+ parser.add_argument("--max_target_length", default=32, type=int,
217
+ help="The maximum total target sequence length after tokenization. Sequences longer "
218
+ "than this will be truncated, sequences shorter will be padded.")
219
+
220
+ parser.add_argument("--do_train", action='store_true',
221
+ help="Whether to run training.")
222
+ parser.add_argument("--do_eval", action='store_true',
223
+ help="Whether to run eval on the dev set.")
224
+ parser.add_argument("--do_test", action='store_true',
225
+ help="Whether to run eval on the dev set.")
226
+ parser.add_argument("--do_lower_case", action='store_true',
227
+ help="Set this flag if you are using an uncased model.")
228
+ parser.add_argument("--no_cuda", action='store_true',
229
+ help="Avoid using CUDA when available")
230
+
231
+ parser.add_argument("--train_batch_size", default=8, type=int,
232
+ help="Batch size per GPU/CPU for training.")
233
+ parser.add_argument("--eval_batch_size", default=8, type=int,
234
+ help="Batch size per GPU/CPU for evaluation.")
235
+ parser.add_argument('--gradient_accumulation_steps', type=int, default=1,
236
+ help="Number of updates steps to accumulate before performing a backward/update pass.")
237
+ parser.add_argument("--learning_rate", default=5e-5, type=float,
238
+ help="The initial learning rate for Adam.")
239
+ parser.add_argument("--beam_size", default=10, type=int,
240
+ help="beam size for beam search")
241
+ parser.add_argument("--weight_decay", default=0.0, type=float,
242
+ help="Weight deay if we apply some.")
243
+ parser.add_argument("--adam_epsilon", default=1e-8, type=float,
244
+ help="Epsilon for Adam optimizer.")
245
+ parser.add_argument("--max_grad_norm", default=1.0, type=float,
246
+ help="Max gradient norm.")
247
+ parser.add_argument("--num_train_epochs", default=3.0, type=float,
248
+ help="Total number of training epochs to perform.")
249
+ parser.add_argument("--max_steps", default=-1, type=int,
250
+ help="If > 0: set total number of training steps to perform. Override num_train_epochs.")
251
+ parser.add_argument("--eval_steps", default=-1, type=int,
252
+ help="")
253
+ parser.add_argument("--train_steps", default=-1, type=int,
254
+ help="")
255
+ parser.add_argument("--warmup_steps", default=0, type=int,
256
+ help="Linear warmup over warmup_steps.")
257
+ parser.add_argument("--local_rank", type=int, default=-1,
258
+ help="For distributed training: local_rank")
259
+ parser.add_argument('--seed', type=int, default=42,
260
+ help="random seed for initialization")
261
+ # print arguments
262
+ args = parser.parse_args()
263
+ logger.info(args)
264
+
265
+ # Setup CUDA, GPU & distributed training
266
+ if args.local_rank == -1 or args.no_cuda:
267
+ device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
268
+ args.n_gpu = torch.cuda.device_count()
269
+ else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
270
+ torch.cuda.set_device(args.local_rank)
271
+ device = torch.device("cuda", args.local_rank)
272
+ torch.distributed.init_process_group(backend='nccl')
273
+ args.n_gpu = 1
274
+ logger.warning("Process rank: %s, device: %s, n_gpu: %s, distributed training: %s",
275
+ args.local_rank, device, args.n_gpu, bool(args.local_rank != -1))
276
+ args.device = device
277
+ # Set seed
278
+ set_seed(args)
279
+ # make dir if output_dir not exist
280
+ if os.path.exists(args.output_dir) is False:
281
+ os.makedirs(args.output_dir)
282
+
283
+ config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
284
+ config = config_class.from_pretrained(args.config_name if args.config_name else args.model_name_or_path)
285
+ tokenizer = tokenizer_class.from_pretrained(args.tokenizer_name,do_lower_case=args.do_lower_case)
286
+
287
+ #budild model
288
+ encoder = model_class.from_pretrained(args.model_name_or_path,config=config)
289
+ decoder_layer = nn.TransformerDecoderLayer(d_model=config.hidden_size, nhead=config.num_attention_heads)
290
+ decoder = nn.TransformerDecoder(decoder_layer, num_layers=6)
291
+ model=Seq2Seq(encoder=encoder,decoder=decoder,config=config,
292
+ beam_size=args.beam_size,max_length=args.max_target_length,
293
+ sos_id=tokenizer.cls_token_id,eos_id=tokenizer.sep_token_id)
294
+
295
+ if args.load_model_path is not None:
296
+ logger.info("reload model from {}".format(args.load_model_path))
297
+ model.load_state_dict(torch.load(args.load_model_path))
298
+
299
+ model.to(device)
300
+ if args.local_rank != -1:
301
+ # Distributed training
302
+ try:
303
+ from apex.parallel import DistributedDataParallel as DDP
304
+ except ImportError:
305
+ raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.")
306
+
307
+ model = DDP(model)
308
+ elif args.n_gpu > 1:
309
+ # multi-gpu training
310
+ model = torch.nn.DataParallel(model)
311
+
312
+
313
+
314
+
315
+ if args.do_train:
316
+ # Prepare training data loader
317
+ train_examples = read_examples(args.train_filename)
318
+ train_features = convert_examples_to_features(train_examples, tokenizer,args,stage='train')
319
+ all_source_ids = torch.tensor([f.source_ids for f in train_features], dtype=torch.long)
320
+ all_source_mask = torch.tensor([f.source_mask for f in train_features], dtype=torch.long)
321
+ all_target_ids = torch.tensor([f.target_ids for f in train_features], dtype=torch.long)
322
+ all_target_mask = torch.tensor([f.target_mask for f in train_features], dtype=torch.long)
323
+ train_data = TensorDataset(all_source_ids,all_source_mask,all_target_ids,all_target_mask)
324
+
325
+ if args.local_rank == -1:
326
+ train_sampler = RandomSampler(train_data)
327
+ else:
328
+ train_sampler = DistributedSampler(train_data)
329
+ train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size//args.gradient_accumulation_steps)
330
+
331
+ num_train_optimization_steps = args.train_steps
332
+
333
+ # Prepare optimizer and schedule (linear warmup and decay)
334
+ no_decay = ['bias', 'LayerNorm.weight']
335
+ optimizer_grouped_parameters = [
336
+ {'params': [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
337
+ 'weight_decay': args.weight_decay},
338
+ {'params': [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], 'weight_decay': 0.0}
339
+ ]
340
+ optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
341
+ scheduler = get_linear_schedule_with_warmup(optimizer, num_warmup_steps=args.warmup_steps,
342
+ num_training_steps=num_train_optimization_steps)
343
+
344
+
345
+ #Start training
346
+ logger.info("***** Running training *****")
347
+ logger.info(" Num examples = %d", len(train_examples))
348
+ logger.info(" Batch size = %d", args.train_batch_size)
349
+ logger.info(" Num epoch = %d", num_train_optimization_steps*args.train_batch_size//len(train_examples))
350
+
351
+
352
+ model.train()
353
+ dev_dataset={}
354
+ nb_tr_examples, nb_tr_steps,tr_loss,global_step,best_bleu,best_loss = 0, 0,0,0,0,1e6
355
+ bar = range(num_train_optimization_steps)
356
+ train_dataloader=cycle(train_dataloader)
357
+ eval_flag = True
358
+ idx=0
359
+ for step in bar:
360
+ batch = next(train_dataloader)
361
+ batch = tuple(t.to(device) for t in batch)
362
+ source_ids,source_mask,target_ids,target_mask = batch
363
+ loss,_,_ = model(source_ids=source_ids,source_mask=source_mask,target_ids=target_ids,target_mask=target_mask)
364
+
365
+ if args.n_gpu > 1:
366
+ loss = loss.mean() # mean() to average on multi-gpu.
367
+ if args.gradient_accumulation_steps > 1:
368
+ loss = loss / args.gradient_accumulation_steps
369
+ tr_loss += loss.item()
370
+ train_loss=round(tr_loss*args.gradient_accumulation_steps/(nb_tr_steps+1),4)
371
+ if (global_step + 1)%100==0:
372
+ logger.info(" step {} loss {} batch-{}".format(global_step + 1,train_loss, ((global_step+1)*args.train_batch_size) / len(train_examples)))
373
+ nb_tr_examples += source_ids.size(0)
374
+ nb_tr_steps += 1
375
+ loss.backward()
376
+
377
+ if (nb_tr_steps + 1) % args.gradient_accumulation_steps == 0:
378
+ #Update parameters
379
+ optimizer.step()
380
+ optimizer.zero_grad()
381
+ scheduler.step()
382
+ global_step += 1
383
+ eval_flag = True
384
+
385
+
386
+ if args.do_eval and ((global_step + 1) %args.eval_steps == 0) and eval_flag:
387
+ #Eval model with dev dataset
388
+ tr_loss = 0
389
+ nb_tr_examples, nb_tr_steps = 0, 0
390
+ eval_flag=False
391
+ if 'dev_loss' in dev_dataset:
392
+ eval_examples,eval_data=dev_dataset['dev_loss']
393
+ else:
394
+ eval_examples = read_examples(args.dev_filename)
395
+ eval_features = convert_examples_to_features(eval_examples, tokenizer, args,stage='dev')
396
+ all_source_ids = torch.tensor([f.source_ids for f in eval_features], dtype=torch.long)
397
+ all_source_mask = torch.tensor([f.source_mask for f in eval_features], dtype=torch.long)
398
+ all_target_ids = torch.tensor([f.target_ids for f in eval_features], dtype=torch.long)
399
+ all_target_mask = torch.tensor([f.target_mask for f in eval_features], dtype=torch.long)
400
+ eval_data = TensorDataset(all_source_ids,all_source_mask,all_target_ids,all_target_mask)
401
+ dev_dataset['dev_loss']=eval_examples,eval_data
402
+ eval_sampler = SequentialSampler(eval_data)
403
+ eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size)
404
+
405
+ logger.info("\n***** Running evaluation *****")
406
+ logger.info(" Num examples = %d", len(eval_examples))
407
+ logger.info(" Batch size = %d", args.eval_batch_size)
408
+
409
+ #Start Evaling model
410
+ model.eval()
411
+ eval_loss,tokens_num = 0,0
412
+ for batch in eval_dataloader:
413
+ batch = tuple(t.to(device) for t in batch)
414
+ source_ids,source_mask,target_ids,target_mask = batch
415
+
416
+ with torch.no_grad():
417
+ _,loss,num = model(source_ids=source_ids,source_mask=source_mask,
418
+ target_ids=target_ids,target_mask=target_mask)
419
+ eval_loss += loss.sum().item()
420
+ tokens_num += num.sum().item()
421
+ #Pring loss of dev dataset
422
+ model.train()
423
+ eval_loss = eval_loss / tokens_num
424
+ result = {'eval_ppl': round(np.exp(eval_loss),5),
425
+ 'global_step': global_step+1,
426
+ 'train_loss': round(train_loss,5)}
427
+ for key in sorted(result.keys()):
428
+ logger.info(" %s = %s", key, str(result[key]))
429
+ logger.info(" "+"*"*20)
430
+
431
+ #save last checkpoint
432
+ last_output_dir = os.path.join(args.output_dir, 'checkpoint-last')
433
+ if not os.path.exists(last_output_dir):
434
+ os.makedirs(last_output_dir)
435
+ model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self
436
+ output_model_file = os.path.join(last_output_dir, "pytorch_model.bin")
437
+ torch.save(model_to_save.state_dict(), output_model_file)
438
+ if eval_loss<best_loss:
439
+ logger.info(" Best ppl:%s",round(np.exp(eval_loss),5))
440
+ logger.info(" "+"*"*20)
441
+ best_loss=eval_loss
442
+ # Save best checkpoint for best ppl
443
+ output_dir = os.path.join(args.output_dir, 'checkpoint-best-ppl')
444
+ if not os.path.exists(output_dir):
445
+ os.makedirs(output_dir)
446
+ model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self
447
+ output_model_file = os.path.join(output_dir, "pytorch_model.bin")
448
+ torch.save(model_to_save.state_dict(), output_model_file)
449
+
450
+
451
+ #Calculate bleu
452
+ if 'dev_bleu' in dev_dataset:
453
+ eval_examples,eval_data=dev_dataset['dev_bleu']
454
+ else:
455
+ eval_examples = read_examples(args.dev_filename)
456
+ eval_examples = random.sample(eval_examples,min(1000,len(eval_examples)))
457
+ eval_features = convert_examples_to_features(eval_examples, tokenizer, args,stage='test')
458
+ all_source_ids = torch.tensor([f.source_ids for f in eval_features], dtype=torch.long)
459
+ all_source_mask = torch.tensor([f.source_mask for f in eval_features], dtype=torch.long)
460
+ eval_data = TensorDataset(all_source_ids,all_source_mask)
461
+ dev_dataset['dev_bleu']=eval_examples,eval_data
462
+
463
+
464
+ eval_sampler = SequentialSampler(eval_data)
465
+ eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size)
466
+
467
+ model.eval()
468
+ p=[]
469
+ for batch in eval_dataloader:
470
+ batch = tuple(t.to(device) for t in batch)
471
+ source_ids,source_mask= batch
472
+ with torch.no_grad():
473
+ preds = model(source_ids=source_ids,source_mask=source_mask)
474
+ for pred in preds:
475
+ t=pred[0].cpu().numpy()
476
+ t=list(t)
477
+ if 0 in t:
478
+ t=t[:t.index(0)]
479
+ text = tokenizer.decode(t,clean_up_tokenization_spaces=False)
480
+ p.append(text)
481
+ model.train()
482
+ predictions=[]
483
+ accs=[]
484
+ with open(os.path.join(args.output_dir,"dev.output"),'w') as f, open(os.path.join(args.output_dir,"dev.gold"),'w') as f1:
485
+ for ref,gold in zip(p,eval_examples):
486
+ predictions.append(str(gold.idx)+'\t'+ref)
487
+ f.write(ref+'\n')
488
+ f1.write(gold.target+'\n')
489
+ accs.append(ref==gold.target)
490
+
491
+ dev_bleu=round(_bleu(os.path.join(args.output_dir, "dev.gold"), os.path.join(args.output_dir, "dev.output")),2)
492
+ logger.info(" %s = %s "%("bleu-4",str(dev_bleu)))
493
+ logger.info(" %s = %s "%("xMatch",str(round(np.mean(accs)*100,4))))
494
+ logger.info(" "+"*"*20)
495
+ if dev_bleu>best_bleu:
496
+ logger.info(" Best bleu:%s",dev_bleu)
497
+ logger.info(" "+"*"*20)
498
+ best_bleu=dev_bleu
499
+ # Save best checkpoint for best bleu
500
+ output_dir = os.path.join(args.output_dir, 'checkpoint-best-bleu')
501
+ if not os.path.exists(output_dir):
502
+ os.makedirs(output_dir)
503
+ model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self
504
+ output_model_file = os.path.join(output_dir, "pytorch_model.bin")
505
+ torch.save(model_to_save.state_dict(), output_model_file)
506
+
507
+ # 每一轮记录checkpoint
508
+ if int((global_step+1)*args.train_batch_size / len(train_examples)) == idx+1:
509
+ logger.info(" batch:%s",idx)
510
+ output_dir = os.path.join(args.output_dir, 'epoch_{}'.format(idx+1))
511
+ if not os.path.exists(output_dir):
512
+ os.makedirs(output_dir)
513
+ model_to_save = model.module if hasattr(model, 'module') else model
514
+ ckpt_output_path = os.path.join(output_dir, 'subject_model.pth')
515
+ logger.info("Saving model checkpoint to %s", ckpt_output_path)
516
+ torch.save(model_to_save.state_dict(), ckpt_output_path)
517
+ idx = idx+1
518
+
519
+ if args.do_test:
520
+ files=[]
521
+ if args.dev_filename is not None:
522
+ files.append(args.dev_filename)
523
+ if args.test_filename is not None:
524
+ files.append(args.test_filename)
525
+ for idx,file in enumerate(files):
526
+ logger.info("Test file: {}".format(file))
527
+ eval_examples = read_examples(file)
528
+ eval_features = convert_examples_to_features(eval_examples, tokenizer, args,stage='test')
529
+ all_source_ids = torch.tensor([f.source_ids for f in eval_features], dtype=torch.long)
530
+ all_source_mask = torch.tensor([f.source_mask for f in eval_features], dtype=torch.long)
531
+ eval_data = TensorDataset(all_source_ids,all_source_mask)
532
+
533
+ # Calculate bleu
534
+ eval_sampler = SequentialSampler(eval_data)
535
+ eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size)
536
+
537
+ model.eval()
538
+ p=[]
539
+ for batch in tqdm(eval_dataloader,total=len(eval_dataloader)):
540
+ batch = tuple(t.to(device) for t in batch)
541
+ source_ids,source_mask= batch
542
+ with torch.no_grad():
543
+ preds = model(source_ids=source_ids,source_mask=source_mask)
544
+ for pred in preds:
545
+ t=pred[0].cpu().numpy()
546
+ t=list(t)
547
+ if 0 in t:
548
+ t=t[:t.index(0)]
549
+ text = tokenizer.decode(t,clean_up_tokenization_spaces=False)
550
+ p.append(text)
551
+ model.train()
552
+ predictions=[]
553
+ accs=[]
554
+ with open(os.path.join(args.output_dir,"test_{}.output".format(str(idx))),'w') as f, open(os.path.join(args.output_dir,"test_{}.gold".format(str(idx))),'w') as f1:
555
+ for ref,gold in zip(p,eval_examples):
556
+ predictions.append(str(gold.idx)+'\t'+ref)
557
+ f.write(ref+'\n')
558
+ f1.write(gold.target+'\n')
559
+ accs.append(ref==gold.target)
560
+ dev_bleu=round(_bleu(os.path.join(args.output_dir, "test_{}.gold".format(str(idx))).format(file),
561
+ os.path.join(args.output_dir, "test_{}.output".format(str(idx))).format(file)),2)
562
+ logger.info(" %s = %s "%("bleu-4",str(dev_bleu)))
563
+ logger.info(" %s = %s "%("xMatch",str(round(np.mean(accs)*100,4))))
564
+ logger.info(" "+"*"*20)
565
+
566
+
567
+
568
+
569
+
570
+
571
+
572
+ if __name__ == "__main__":
573
+ main()
574
+
575
+
Code-Code/code-refinement/code/train.sh ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ pretrained_model=microsoft/codebert-base
2
+ output_dir=../model
3
+ data_size=small
4
+
5
+ CUDA_VISIBLE_DEVICES=1 python run.py \
6
+ --do_train \
7
+ --do_eval \
8
+ --model_type roberta \
9
+ --model_name_or_path $pretrained_model \
10
+ --config_name roberta-base \
11
+ --tokenizer_name roberta-base \
12
+ --train_filename ../data/$data_size/train.buggy-fixed.buggy,../data/$data_size/train.buggy-fixed.fixed \
13
+ --dev_filename ../data/$data_size/valid.buggy-fixed.buggy,../data/$data_size/valid.buggy-fixed.fixed \
14
+ --output_dir $output_dir \
15
+ --max_source_length 256 \
16
+ --max_target_length 256 \
17
+ --beam_size 5 \
18
+ --train_batch_size 16 \
19
+ --eval_batch_size 16 \
20
+ --learning_rate 5e-5 \
21
+ --train_steps 100000 \
22
+ --eval_steps 5000
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