gpwolfe commited on
Commit
a394064
·
verified ·
1 Parent(s): bcf2a0e

Add DFT_polymorphs_PNAS_2022_PBE_TS_benzene_validation files

Browse files
Files changed (3) hide show
  1. README.md +55 -0
  2. co/co_0.parquet +3 -0
  3. ds.parquet +3 -0
README.md ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ configs:
3
+ - config_name: default
4
+ data_files: "co/*.parquet"
5
+ - config_name: info
6
+ data_files: "ds.parquet"
7
+ license: cc-by-4.0
8
+ tags:
9
+ - molecular dynamics
10
+ - mlip
11
+ - interatomic potential
12
+ pretty_name: DFT polymorphs PNAS 2022 PBE TS benzene validation
13
+ ---
14
+ ### <details><summary>Cite this dataset </summary>Kapil, V., and Engel, E. A. _DFT polymorphs PNAS 2022 PBE TS benzene validation_. ColabFit, 2023. https://doi.org/10.60732/01b77268</details>
15
+ #### This dataset has been curated and formatted for the ColabFit Exchange
16
+ #### This dataset is also available on the ColabFit Exchange:
17
+ https://materials.colabfit.org/id/DS_8ou78o18mvfz_0
18
+ #### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
19
+ https://materials.colabfit.org
20
+ <br><hr>
21
+ # Dataset Name
22
+ DFT polymorphs PNAS 2022 PBE TS benzene validation
23
+ ### Description
24
+ Benzene validation PBE-TS dataset from "Semi-local and hybrid functional DFT data for thermalised snapshots of polymorphs of benzene, succinic acid, and glycine". DFT reference energies and forces were calculated using Quantum Espresso v6.3. The calculations were performed with the semi-local PBE xc functional, Tkatchenko-Scheffler dispersion correction, optimised norm-conserving Vanderbilt pseudopotentials, a Monkhorst-Pack k-point grid with a maximum spacing of 0.06 x 2π A^-1, and a plane-wave energy cut-off of 100 Ry for the wavefunction.
25
+ ### Dataset authors
26
+ Venkat Kapil, Edgar A. Engel
27
+ ### Publication
28
+ https://doi.org/10.1073/pnas.2111769119
29
+ ### Original data link
30
+ https://doi.org/10.24435/materialscloud:vp-jf
31
+ ### License
32
+ CC-BY-4.0
33
+ ### Number of unique molecular configurations
34
+ 1000
35
+ ### Number of atoms
36
+ 29712
37
+ ### Elements included
38
+ C, H
39
+ ### Properties included
40
+ energy, atomic forces, cauchy stress
41
+ <br>
42
+ <hr>
43
+
44
+ # Usage
45
+ - `ds.parquet` : Aggregated dataset information.
46
+ - `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
47
+ - `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
48
+ - `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
49
+ <br>
50
+ #### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
51
+ - [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
52
+ - [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
53
+ - [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
54
+ - [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
55
+ - [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
co/co_0.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b2f6f6264bd28698f40ce101b9fc31749cae91c9d9f236f893e6918a21b12a7f
3
+ size 1740748
ds.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2a2592210543d7448dcfb19151d3cf7db533ab431afe17cfeec75147358c8f71
3
+ size 18852