Datasets:
Add MD22_AT_AT files
Browse files- README.md +55 -0
- co/co_0.parquet +3 -0
- ds.parquet +3 -0
README.md
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---
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configs:
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- config_name: default
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data_files: "co/*.parquet"
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- config_name: info
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data_files: "ds.parquet"
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license: cc0-1.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: MD22 AT AT
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---
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### <details><summary>Cite this dataset </summary>Chmiela, S., Vassilev-Galindo, V., Unke, O. T., Kabylda, A., Sauceda, H. E., Tkatchenko, A., and Müller, K. _MD22 AT AT_. ColabFit, 2023. https://doi.org/10.60732/3e801453</details>
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#### This dataset has been curated and formatted for the ColabFit Exchange
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#### This dataset is also available on the ColabFit Exchange:
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https://materials.colabfit.org/id/DS_eqt5dbhsmm68_0
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#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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https://materials.colabfit.org
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<br><hr>
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# Dataset Name
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MD22 AT AT
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### Description
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Dataset containing MD trajectories of AT-AT DNA base pairs from the MD22 benchmark set. {DESC}
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### Dataset authors
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Stefan Chmiela, Valentin Vassilev-Galindo, Oliver T. Unke, Adil Kabylda, Huziel E. Sauceda, Alexandre Tkatchenko, Klaus-Robert Müller
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### Publication
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https://doi.org/10.1126/sciadv.adf0873
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### Original data link
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http://sgdml.org/
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### License
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CC0-1.0
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### Number of unique molecular configurations
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19999
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### Number of atoms
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1199940
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### Elements included
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C, H, N, O
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### Properties included
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energy, atomic forces, cauchy stress
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<br>
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<hr>
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# Usage
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- `ds.parquet` : Aggregated dataset information.
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- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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<br>
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#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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co/co_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:f890d29554ec19a80b8ace73d649791187c0bc36dbbf8278cec91870819a4c04
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size 47378845
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ds.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:654a7cdaeb8c7ae6bf0818179116bbedb33ba8364ca0afde7c5deb42b7493cdc
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size 16275
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