Datasets:
Add NENCI-2021 files
Browse files- README.md +59 -0
- co/co_0.parquet +3 -0
- cs/cs_0.parquet +3 -0
- cs_co_map/cs_co_map_0.parquet +3 -0
- ds.parquet +3 -0
README.md
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---
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configs:
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- config_name: default
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data_files: "co/*.parquet"
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- config_name: info
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data_files: "ds.parquet"
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- config_name: configuration_sets
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data_files: "cs/*.parquet"
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- config_name: config_set_mapping
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data_files: "cs_co_map/*.parquet"
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license: cc-by-4.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: NENCI-2021
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---
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### <details><summary>Cite this dataset </summary>Sparrow, Z. M., Ernst, B. G., Joo, P. T., Lao, K. U., and Jr, R. A. D. _NENCI-2021_. ColabFit, 2023. https://doi.org/10.60732/5d2a1ceb</details>
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#### This dataset has been curated and formatted for the ColabFit Exchange
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#### This dataset is also available on the ColabFit Exchange:
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https://materials.colabfit.org/id/DS_0j2smy6relq0_0
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#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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https://materials.colabfit.org
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<br><hr>
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# Dataset Name
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NENCI-2021
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### Description
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NENCI-2021 is a database of approximately 8000 benchmark Non-Equilibirum Non-Covalent Interaction (NENCI) energies performed on molecular dimers;intermolecular complexes of biological and chemical relevance with a particular emphasis on close intermolecular contacts. Based on dimersfrom the S101 database.
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### Dataset authors
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Zachary M. Sparrow, Brian G. Ernst, Paul T. Joo, Ka Un Lao, Robert A. DiStasio, Jr
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### Publication
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https://doi.org/10.1063/5.0068862
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### Original data link
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https://pubs.aip.org/jcp/article-supplement/199609/zip/184303_1_supplements/
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### License
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CC-BY-4.0
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### Number of unique molecular configurations
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7763
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### Number of atoms
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129402
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### Elements included
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Br, C, Cl, F, H, Li, N, Na, O, P, S
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### Properties included
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energy
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<br>
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<hr>
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# Usage
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- `ds.parquet` : Aggregated dataset information.
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- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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<br>
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#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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co/co_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:d1c2a27e0ea8b6de7c7de1515d8885dd9927c6d0ade64c62e2804eb4f64b66a2
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size 33251741
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cs/cs_0.parquet
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version https://git-lfs.github.com/spec/v1
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size 14644
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cs_co_map/cs_co_map_0.parquet
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version https://git-lfs.github.com/spec/v1
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size 105433
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ds.parquet
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version https://git-lfs.github.com/spec/v1
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size 17315
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