gpwolfe commited on
Commit
d6ff2dc
·
verified ·
1 Parent(s): 23534db

Delete README.md

Browse files
Files changed (1) hide show
  1. README.md +0 -36
README.md DELETED
@@ -1,36 +0,0 @@
1
- ---
2
- configs:
3
- - config_name: default
4
- data_files: "main/*.parquet"
5
- license: mit
6
- tags:
7
- - molecular dynamics
8
- - mlip
9
- - interatomic potential
10
- pretty_name: SPICE 2023
11
- ---
12
- ### Cite this dataset
13
- Eastman, P., Behara, P. K., Dotson, D. L., Galvelis, R., Herr, J. E., Horton, J. T., Mao, Y., Chodera, J. D., Pritchard, B. P., Wang, Y., Fabritiis, G. D., and Markland, T. E. _SPICE 2023_. ColabFit, 2023. https://doi.org/10.60732/a613a175
14
- ### View on the ColabFit Exchange
15
- https://materials.colabfit.org/id/DS_kg0dv12aiq97_0
16
- # Dataset Name
17
- SPICE 2023
18
- ### Description
19
- SPICE (Small-Molecule/Protein Interaction Chemical Energies) is a collection of quantum mechanical data for training potential functions. The emphasis is particularly on simulating drug-like small molecules interacting with proteins. Subsets of the dataset include the following: dipeptides: these provide comprehensive sampling of the covalent interactions found in proteins; solvated amino acids: these provide sampling of protein-water and water-water interactions; PubChem molecules: These sample a very wide variety of drug-like small molecules; monomer and dimer structures from DES370K: these provide sampling of a wide variety of non-covalent interactions; ion pairs: these provide further sampling of Coulomb interactions over a range of distances.
20
- <br>Additional details stored in dataset columns prepended with "dataset_".
21
- ### Dataset authors
22
- Peter Eastman, Pavan Kumar Behara, David L. Dotson, Raimondas Galvelis, John E. Herr, Josh T. Horton, Yuezhi Mao, John D. Chodera, Benjamin P. Pritchard, Yuanqing Wang, Gianni De Fabritiis, Thomas E. Markland
23
- ### Publication
24
- https://doi.org/10.1038/s41597-022-01882-6
25
- ### Original data link
26
- https://doi.org/10.5281/zenodo.8222043
27
- ### License
28
- MIT
29
- ### Number of unique molecular configurations
30
- 116504
31
- ### Number of atoms
32
- 3382829
33
- ### Elements included
34
- Br, C, Ca, Cl, F, H, I, K, Li, N, Na, O, P, S
35
- ### Properties included
36
- energy, formation energy