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Add Transition1x-test files

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  1. README.md +55 -0
  2. co/co_0.parquet +3 -0
  3. ds.parquet +3 -0
README.md ADDED
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+ ---
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+ configs:
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+ - config_name: default
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+ data_files: "co/*.parquet"
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+ - config_name: info
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+ data_files: "ds.parquet"
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+ license: mit
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+ tags:
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+ - molecular dynamics
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+ - mlip
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+ - interatomic potential
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+ pretty_name: Transition1x-test
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+ ---
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+ ### <details><summary>Cite this dataset </summary>Schreiner, M., Bhowmik, A., Vegge, T., Busk, J., and Winther, O. _Transition1x-test_. ColabFit, 2023. https://doi.org/10.60732/f26a9f60</details>
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+ #### This dataset has been curated and formatted for the ColabFit Exchange
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+ #### This dataset is also available on the ColabFit Exchange:
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+ https://materials.colabfit.org/id/DS_zzfaosyakwom_0
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+ #### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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+ https://materials.colabfit.org
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+ <br><hr>
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+ # Dataset Name
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+ Transition1x-test
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+ ### Description
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+ The test split of the Transition1x dataset. Transition1x is a benchmark dataset containing 9.6 million Density Functional Theory (DFT) calculations of forces and energies of molecular configurations on and around reaction pathways at the ωB97x/6-31 G(d) level of theory. The configurations contained in this dataset allow a better representation of features in transition state regions when compared to other benchmark datasets -- in particular QM9 and ANI1x.
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+ ### Dataset authors
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+ Mathias Schreiner, Arghya Bhowmik, Tejs Vegge, Jonas Busk, Ole Winther
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+ ### Publication
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+ https://doi.org/10.1038/s41597-022-01870-w
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+ ### Original data link
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+ https://doi.org/10.6084/m9.figshare.19614657.v4
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+ ### License
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+ MIT
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+ ### Number of unique molecular configurations
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+ 190261
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+ ### Number of atoms
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+ 2106595
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+ ### Elements included
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+ C, H, N, O
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+ ### Properties included
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+ energy, atomic forces, cauchy stress
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+ <br>
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+ <hr>
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+
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+ # Usage
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+ - `ds.parquet` : Aggregated dataset information.
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+ - `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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+ - `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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+ - `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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+ <br>
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+ #### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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+ - [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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+ - [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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+ - [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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+ - [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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+ - [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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