Add UNEP_v1_2023_test files
Browse files- README.md +55 -0
- co/co_0.parquet +3 -0
- ds.parquet +3 -0
README.md
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
configs:
|
| 3 |
+
- config_name: default
|
| 4 |
+
data_files: "co/*.parquet"
|
| 5 |
+
- config_name: info
|
| 6 |
+
data_files: "ds.parquet"
|
| 7 |
+
license: cc-by-4.0
|
| 8 |
+
tags:
|
| 9 |
+
- molecular dynamics
|
| 10 |
+
- mlip
|
| 11 |
+
- interatomic potential
|
| 12 |
+
pretty_name: UNEP v1 2023 test
|
| 13 |
+
---
|
| 14 |
+
### <details><summary>Cite this dataset </summary>Song, K., Zhao, R., Liu, J., Wang, Y., Lindgren, E., Wang, Y., Chen, S., Xu, K., Liang, T., Ying, P., Xu, N., Zhao, Z., Shi, J., Wang, J., Lyu, S., Zeng, Z., Liang, S., Dong, H., Sun, L., Chen, Y., Zhang, Z., Guo, W., Qian, P., Sun, J., Erhart, P., Ala-Nissila, T., Su, Y., and Fan, Z. _UNEP v1 2023 test_. ColabFit, 2023. https://doi.org/10.60732/b459b5f2</details>
|
| 15 |
+
#### This dataset has been curated and formatted for the ColabFit Exchange
|
| 16 |
+
#### This dataset is also available on the ColabFit Exchange:
|
| 17 |
+
https://materials.colabfit.org/id/DS_jyklsju4h580_0
|
| 18 |
+
#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
|
| 19 |
+
https://materials.colabfit.org
|
| 20 |
+
<br><hr>
|
| 21 |
+
# Dataset Name
|
| 22 |
+
UNEP v1 2023 test
|
| 23 |
+
### Description
|
| 24 |
+
The test set for UNEP-v1 (version 1 of Unified NeuroEvolution Potential), a model implemented in GPUMD.
|
| 25 |
+
### Dataset authors
|
| 26 |
+
Keke Song, Rui Zhao, Jiahui Liu, Yanzhou Wang, Eric Lindgren, Yong Wang, Shunda Chen, Ke Xu, Ting Liang, Penghua Ying, Nan Xu, Zhiqiang Zhao, Jiuyang Shi, Junjie Wang, Shuang Lyu, Zezhu Zeng, Shirong Liang, Haikuan Dong, Ligang Sun, Yue Chen, Zhuhua Zhang, Wanlin Guo, Ping Qian, Jian Sun, Paul Erhart, Tapio Ala-Nissila, Yanjing Su, Zheyong Fan
|
| 27 |
+
### Publication
|
| 28 |
+
https://doi.org/10.1038/s41467-024-54554-x
|
| 29 |
+
### Original data link
|
| 30 |
+
https://zenodo.org/doi/10.5281/zenodo.10081676
|
| 31 |
+
### License
|
| 32 |
+
CC-BY-4.0
|
| 33 |
+
### Number of unique molecular configurations
|
| 34 |
+
4411
|
| 35 |
+
### Number of atoms
|
| 36 |
+
318910
|
| 37 |
+
### Elements included
|
| 38 |
+
Ag, Al, Au, Cr, Cu, Mg, Mo, Ni, Pb, Pd, Pt, Ta, Ti, V, W, Zr
|
| 39 |
+
### Properties included
|
| 40 |
+
energy, atomic forces, cauchy stress
|
| 41 |
+
<br>
|
| 42 |
+
<hr>
|
| 43 |
+
|
| 44 |
+
# Usage
|
| 45 |
+
- `ds.parquet` : Aggregated dataset information.
|
| 46 |
+
- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
|
| 47 |
+
- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
|
| 48 |
+
- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
|
| 49 |
+
<br>
|
| 50 |
+
#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
|
| 51 |
+
- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
|
| 52 |
+
- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
|
| 53 |
+
- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
|
| 54 |
+
- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
|
| 55 |
+
- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
|
co/co_0.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cdee03b8309bc516a1b680548445fe4bd7f0217dd153973d6a85ff2f9ac74f53
|
| 3 |
+
size 14947482
|
ds.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:79e1ee82cb3f38db51695529beacf11b99acf24fd8903fba6e96fd1afda6c9ca
|
| 3 |
+
size 17339
|