Add rMD17 files
Browse files- README.md +59 -0
- co/co_0.parquet +3 -0
- co/co_1.parquet +3 -0
- cs/cs_0.parquet +3 -0
- cs_co_map/cs_co_map_0.parquet +3 -0
- ds.parquet +3 -0
README.md
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---
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configs:
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- config_name: default
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data_files: "co/*.parquet"
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- config_name: info
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data_files: "ds.parquet"
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- config_name: configuration_sets
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data_files: "cs/*.parquet"
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- config_name: config_set_mapping
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data_files: "cs_co_map/*.parquet"
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license: cc0-1.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: rMD17
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---
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### <details><summary>Cite this dataset </summary>Christensen, A. S., and Lilienfeld, O. A. _rMD17_. ColabFit, 2023. https://doi.org/10.60732/682fe04a</details>
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#### This dataset has been curated and formatted for the ColabFit Exchange
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#### This dataset is also available on the ColabFit Exchange:
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https://materials.colabfit.org/id/DS_8rafgy0ly6bt_0
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#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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https://materials.colabfit.org
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<br><hr>
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# Dataset Name
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rMD17
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### Description
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A dataset of 10 molecules (aspirin, azobenzene, benzene, ethanol, malonaldehyde, naphthalene, paracetamol, salicylic, toluene, uracil) with 100,000 structures calculated for each at the PBE/def2-SVP level of theory using ORCA. Based on the MD17 dataset, but with refined measurements.
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### Dataset authors
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Anders S. Christensen, O. Anatole von Lilienfeld
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### Publication
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https://doi.org/10.1088/2632-2153/abba6f
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### Original data link
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https://doi.org/10.6084/m9.figshare.12672038.v3
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### License
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CC0-1.0
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### Number of unique molecular configurations
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999906
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### Number of atoms
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15598381
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### Elements included
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C, H, N, O
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### Properties included
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energy, atomic forces, cauchy stress
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<br>
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<hr>
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# Usage
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- `ds.parquet` : Aggregated dataset information.
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- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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<br>
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#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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co/co_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:68fdeded9e7078cf7c20fa4098cc1030f3b969397404bf180ab99d026e355d23
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size 523387868
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co/co_1.parquet
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version https://git-lfs.github.com/spec/v1
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size 523625563
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cs/cs_0.parquet
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version https://git-lfs.github.com/spec/v1
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size 8568
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cs_co_map/cs_co_map_0.parquet
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version https://git-lfs.github.com/spec/v1
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size 10419419
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ds.parquet
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version https://git-lfs.github.com/spec/v1
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size 17159
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