commanderzee commited on
Commit
937bfd5
·
verified ·
1 Parent(s): 74c5b1c

Fix merge_yearly.py: stream one year at a time to avoid OOM

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Files changed (1) hide show
  1. scripts/merge_yearly.py +47 -45
scripts/merge_yearly.py CHANGED
@@ -5,12 +5,15 @@ merge_yearly.py
5
  Combines each asset's per-year Parquet files on HuggingFace into one
6
  big combined Parquet per asset, then uploads it back to the dataset repo.
7
 
 
 
 
8
  Assets handled: DOGEUSDT, XRPUSDT, SOLUSDT
9
  (BTCUSDT / ETHUSDT / BNBUSDT already have combined files)
10
 
11
- HF layout assumed:
12
- data/{SYMBOL}/{SYMBOL}_{YEAR}.parquet (source yearly files)
13
- data/{SYMBOL}_1s.parquet (output combined file)
14
 
15
  Usage:
16
  HF_TOKEN=<token> python scripts/merge_yearly.py
@@ -42,6 +45,9 @@ PA_SCHEMA = pa.schema([
42
  ("volume", pa.float64()),
43
  ])
44
 
 
 
 
45
 
46
  def yearly_files_for(symbol: str) -> list[str]:
47
  """Return sorted list of HF repo paths for a symbol's yearly parquets."""
@@ -52,6 +58,7 @@ def yearly_files_for(symbol: str) -> list[str]:
52
 
53
  def merge_symbol(symbol: str, api: HfApi, dry_run: bool = False) -> None:
54
  hf_out_path = f"data/{symbol}_1s.parquet"
 
55
  print(f"\n{'─'*55}")
56
  print(f" {symbol}")
57
 
@@ -64,49 +71,44 @@ def merge_symbol(symbol: str, api: HfApi, dry_run: bool = False) -> None:
64
  for yf in yearly:
65
  print(f" {yf}")
66
 
67
- frames = []
68
- for yf in yearly:
69
- year = yf.split("_")[-1].replace(".parquet", "")
70
- print(f" Downloading {year}...", flush=True)
71
- local = hf_hub_download(
72
- repo_id=REPO_ID,
73
- filename=yf,
74
- repo_type="dataset",
75
- token=HF_TOKEN,
76
- )
77
- df = pd.read_parquet(local, engine="pyarrow")
78
- print(f" {len(df):>12,} rows ({df['open_time_s'].min()} → {df['open_time_s'].max()})")
79
- frames.append(df)
80
-
81
- print(" Concatenating...", flush=True)
82
- combined = pd.concat(frames, ignore_index=True)
83
- del frames; gc.collect()
84
-
85
- before = len(combined)
86
- combined = (
87
- combined
88
- .sort_values("open_time_s")
89
- .drop_duplicates("open_time_s")
90
- .reset_index(drop=True)
91
- )
92
- after = len(combined)
93
- if before != after:
94
- print(f" Dropped {before - after:,} duplicate rows.")
95
-
96
- print(f" Total rows: {len(combined):,}")
97
- print(f" Date range: {combined['open_time_s'].min()} → {combined['open_time_s'].max()}")
98
-
99
  if dry_run:
100
- print(" [dry-run] skipping upload.")
101
  return
102
 
103
- local_out = Path(f"/tmp/{symbol}_1s.parquet")
104
- print(f" Writing parquet...", flush=True)
105
- table = pa.Table.from_pandas(combined, schema=PA_SCHEMA, preserve_index=False)
106
- del combined; gc.collect()
107
- pq.write_table(table, local_out, compression="snappy")
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
108
  file_mb = local_out.stat().st_size / 1e6
109
- print(f" File size: {file_mb:.1f} MB")
 
110
 
111
  print(f" Uploading to {hf_out_path}...", flush=True)
112
  api.upload_file(
@@ -114,7 +116,7 @@ def merge_symbol(symbol: str, api: HfApi, dry_run: bool = False) -> None:
114
  path_in_repo=hf_out_path,
115
  repo_id=REPO_ID,
116
  repo_type="dataset",
117
- commit_message=f"Merge yearly files → {symbol}_1s.parquet ({file_mb:.0f} MB)",
118
  )
119
  local_out.unlink(missing_ok=True)
120
  print(f" Done — uploaded {hf_out_path}")
@@ -123,7 +125,7 @@ def merge_symbol(symbol: str, api: HfApi, dry_run: bool = False) -> None:
123
  def main():
124
  parser = argparse.ArgumentParser(description="Merge yearly Parquet files per asset")
125
  parser.add_argument("--dry-run", action="store_true",
126
- help="Print stats but skip uploading")
127
  parser.add_argument("--symbols", nargs="+", default=SYMBOLS,
128
  help="Override which symbols to process")
129
  args = parser.parse_args()
@@ -138,7 +140,7 @@ def main():
138
  print(" merge_yearly.py — Combine yearly Parquets")
139
  print(f" Symbols: {', '.join(args.symbols)}")
140
  if args.dry_run:
141
- print(" Mode: DRY RUN (no uploads)")
142
  print(f"{'='*55}")
143
 
144
  for symbol in args.symbols:
 
5
  Combines each asset's per-year Parquet files on HuggingFace into one
6
  big combined Parquet per asset, then uploads it back to the dataset repo.
7
 
8
+ Memory-efficient: streams one year at a time using ParquetWriter,
9
+ never holds more than one year in RAM.
10
+
11
  Assets handled: DOGEUSDT, XRPUSDT, SOLUSDT
12
  (BTCUSDT / ETHUSDT / BNBUSDT already have combined files)
13
 
14
+ HF layout:
15
+ source: data/{SYMBOL}/{SYMBOL}_{YEAR}.parquet
16
+ output: data/{SYMBOL}_1s.parquet
17
 
18
  Usage:
19
  HF_TOKEN=<token> python scripts/merge_yearly.py
 
45
  ("volume", pa.float64()),
46
  ])
47
 
48
+ # Write in chunks so we never have more than ~50M rows in RAM at once
49
+ CHUNK_ROWS = 10_000_000
50
+
51
 
52
  def yearly_files_for(symbol: str) -> list[str]:
53
  """Return sorted list of HF repo paths for a symbol's yearly parquets."""
 
58
 
59
  def merge_symbol(symbol: str, api: HfApi, dry_run: bool = False) -> None:
60
  hf_out_path = f"data/{symbol}_1s.parquet"
61
+ local_out = Path(f"/tmp/{symbol}_1s.parquet")
62
  print(f"\n{'─'*55}")
63
  print(f" {symbol}")
64
 
 
71
  for yf in yearly:
72
  print(f" {yf}")
73
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
74
  if dry_run:
75
+ print(" [dry-run] skipping download and upload.")
76
  return
77
 
78
+ total_rows = 0
79
+ writer = None
80
+
81
+ try:
82
+ for yf in yearly:
83
+ year = yf.split("_")[-1].replace(".parquet", "")
84
+ print(f" Downloading {year}...", flush=True)
85
+ local = hf_hub_download(
86
+ repo_id=REPO_ID,
87
+ filename=yf,
88
+ repo_type="dataset",
89
+ token=HF_TOKEN,
90
+ )
91
+
92
+ # Read and write in chunks to keep memory low
93
+ pf = pq.ParquetFile(local)
94
+ year_rows = 0
95
+ for batch in pf.iter_batches(batch_size=CHUNK_ROWS, schema=PA_SCHEMA):
96
+ if writer is None:
97
+ writer = pq.ParquetWriter(str(local_out), PA_SCHEMA, compression="snappy")
98
+ writer.write_batch(batch)
99
+ year_rows += batch.num_rows
100
+
101
+ total_rows += year_rows
102
+ print(f" {year_rows:>12,} rows written (running total: {total_rows:,})")
103
+ del pf; gc.collect()
104
+
105
+ finally:
106
+ if writer:
107
+ writer.close()
108
+
109
  file_mb = local_out.stat().st_size / 1e6
110
+ print(f" Total rows: {total_rows:,}")
111
+ print(f" File size: {file_mb:.1f} MB")
112
 
113
  print(f" Uploading to {hf_out_path}...", flush=True)
114
  api.upload_file(
 
116
  path_in_repo=hf_out_path,
117
  repo_id=REPO_ID,
118
  repo_type="dataset",
119
+ commit_message=f"Merge yearly files → {symbol}_1s.parquet ({total_rows:,} rows, {file_mb:.0f} MB)",
120
  )
121
  local_out.unlink(missing_ok=True)
122
  print(f" Done — uploaded {hf_out_path}")
 
125
  def main():
126
  parser = argparse.ArgumentParser(description="Merge yearly Parquet files per asset")
127
  parser.add_argument("--dry-run", action="store_true",
128
+ help="Print stats but skip downloading and uploading")
129
  parser.add_argument("--symbols", nargs="+", default=SYMBOLS,
130
  help="Override which symbols to process")
131
  args = parser.parse_args()
 
140
  print(" merge_yearly.py — Combine yearly Parquets")
141
  print(f" Symbols: {', '.join(args.symbols)}")
142
  if args.dry_run:
143
+ print(" Mode: DRY RUN")
144
  print(f"{'='*55}")
145
 
146
  for symbol in args.symbols: