{ "benchmark_final_hf_columns": [ { "name": "Unique_identifier", "type": "string", "description": "Unique row identifier, e.g. USPTO_US03930836_0. Use this column to join split files." }, { "name": "OriginalReaction", "type": "string", "description": "Original USPTO reaction SMILES before any curation or canonicalization." }, { "name": "InputReaction", "type": "string", "description": "Model input: atom-imbalanced reaction SMILES with reagents moved to the reactant side (reactants.reagents>>incomplete_product)." }, { "name": "TargetReaction", "type": "string", "description": "Ground-truth target: full atom- and charge-balanced reaction SMILES from FlowER." }, { "name": "TargetReaction_with_stereo", "type": "string", "description": "Target reaction with stereochemistry transferred back from the original USPTO record. Null where stereo could not be resolved." }, { "name": "has_unresolved_stereo", "type": "boolean", "description": "True if one or more stereocentres in the FlowER reaction could not be resolved from the USPTO record." }, { "name": "CanonicalOriginalReaction", "type": "string", "description": "Canonicalized original USPTO reaction in standard reactants>reagents>products format, no atom mapping." }, { "name": "CanonicalReaction", "type": "string", "description": "Canonicalised reaction with reagents identified based on atom mapping (similar to USPTO Stereo) " }, { "name": "MissingNrAtoms", "type": "integer", "description": "Number of heavy atoms present in the target but missing from the input product side. Primary difficulty axis. Based on CanonicalReaction to avoid counting reagents as missing atoms." }, { "name": "MissingNrCarbons", "type": "integer", "description": "Number of carbon atoms present in the target but missing from the input product side. Based on CanonicalReaction to avoid counting reagents." }, { "name": "MissingMw", "type": "float", "description": "Molecular weight (Da) of the missing fragment (target minus input product). Based on CanonicalReaction to avoid counting reagents." }, { "name": "IsBalanced", "type": "boolean", "description": "True if the CanonicalReaction record is already atom-balanced before curation." }, { "name": "Balance", "type": "string", "description": "String that describes the type and number of missing atoms." }, { "name": "rxn_class", "type": "string", "description": "USPTO reaction class label (NameRxn classification)." }, { "name": "1kTPLLabel", "type": "string", "description": "Reaction template label from the 1 000 most common templates. Null if the reaction does not match any of the top-1k templates." }, { "name": "FlowER_ID", "type": "string", "description": "Identifier of the linked FlowER mechanistic reaction step. Used to trace provenance back to the FlowER dataset." }, { "name": "PatentNumber", "type": "string", "description": "USPTO patent number from which the reaction was extracted." }, { "name": "ParagraphNum", "type": "integer", "description": "Paragraph number within the patent from which the reaction was extracted." }, { "name": "Year", "type": "integer", "description": "Year the USPTO patent was filed." } ], "split_files": { "description": "Each split file contains Unique_identifier, row_index, and a split assignment column. Join on Unique_identifier. Values: 0=train, 1=valid, 2=test.", "files": [ { "folder": "random_splits/", "split_column": "random_split", "description": "5 random train/valid/test splits (rep0-rep4). Seeds 42-46." }, { "folder": "group_splits/", "split_column": "group_split", "description": "5 group-OOD splits based on DRFP fingerprint clustering. Test set contains reaction groups not seen during training." }, { "folder": "extreme_ood_splits/", "split_column": "extreme_ood_split", "description": "5 extreme OOD splits using KNN-graph separation. Test set is maximally dissimilar from the training set by Tanimoto distance." } ] } }