Datasets:
update readme
Browse files
README.md
CHANGED
|
@@ -1,29 +1,32 @@
|
|
| 1 |
-
---
|
| 2 |
-
viewer: false
|
| 3 |
-
---
|
| 4 |
-
license:
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
-
|
| 9 |
-
-
|
|
|
|
|
|
|
|
|
|
| 10 |
---
|
| 11 |
|
| 12 |
# mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
|
| 13 |
|
| 14 |
-
This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to
|
| 15 |
|
| 16 |
---
|
| 17 |
## Availability
|
| 18 |
-
- torchmd-net dataloader
|
| 19 |
-
- playmolecule
|
| 20 |
-
- vmd script to load and analysis
|
| 21 |
|
| 22 |
---
|
| 23 |
## Citing The Dataset
|
| 24 |
Please cite this manuscript for papers that use the mdCATH dataset:
|
| 25 |
|
| 26 |
-
Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. "mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics" (
|
| 27 |
|
| 28 |
---
|
| 29 |
## Dataset Size
|
|
@@ -40,4 +43,4 @@ Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. "mdCATH: A Large-Scale MD
|
|
| 40 |
| Avg. domain length | 137 AAs |
|
| 41 |
| Total file size | 3.3 TB |
|
| 42 |
|
| 43 |
-
---
|
|
|
|
| 1 |
+
---
|
| 2 |
+
viewer: false
|
| 3 |
+
---
|
| 4 |
+
license: CC BY-ND 4.0</br>
|
| 5 |
+
|
| 6 |
+
Tags:
|
| 7 |
+
|
| 8 |
+
- Chemistry
|
| 9 |
+
- Biology
|
| 10 |
+
- Molecular Dynamics
|
| 11 |
+
- Neural Network Potential
|
| 12 |
+
|
| 13 |
---
|
| 14 |
|
| 15 |
# mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
|
| 16 |
|
| 17 |
+
This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to 450 K.
|
| 18 |
|
| 19 |
---
|
| 20 |
## Availability
|
| 21 |
+
- [torchmd-net dataloader](https://github.com/torchmd/torchmd-net/blob/main/torchmdnet/datasets/mdcath.py)
|
| 22 |
+
- [playmolecule](https://open.playmolecule.org/mdcath)
|
| 23 |
+
- [vmd script to load and analysis]
|
| 24 |
|
| 25 |
---
|
| 26 |
## Citing The Dataset
|
| 27 |
Please cite this manuscript for papers that use the mdCATH dataset:
|
| 28 |
|
| 29 |
+
Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. "mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics" ([arXiv:2407.14794](https://arxiv.org/abs/2407.14794v1))
|
| 30 |
|
| 31 |
---
|
| 32 |
## Dataset Size
|
|
|
|
| 43 |
| Avg. domain length | 137 AAs |
|
| 44 |
| Total file size | 3.3 TB |
|
| 45 |
|
| 46 |
+
---
|