Datasets:
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
video-language-model
egocentric-video
laboratory
wet-lab
procedural-monitoring
error-detection
License:
| """Generic metric helpers for benchmark tasks.""" | |
| from __future__ import annotations | |
| import random | |
| import statistics | |
| from collections import Counter | |
| from typing import Any, Callable, Iterable | |
| def safe_div(num: float, denom: float) -> float | None: | |
| return num / denom if denom else None | |
| def mean(values: Iterable[float | None]) -> float | None: | |
| clean = [value for value in values if value is not None] | |
| return sum(clean) / len(clean) if clean else None | |
| def classification_scores( | |
| pairs: Iterable[tuple[Any, Any]], | |
| *, | |
| labels: Iterable[Any] | None = None, | |
| none_is_wrong: bool = True, | |
| ) -> dict[str, Any]: | |
| """Compute accuracy, balanced accuracy, F1, precision, recall, and confusion.""" | |
| pair_list = list(pairs) | |
| if labels is None: | |
| label_values = sorted( | |
| { | |
| str(value) | |
| for target, pred in pair_list | |
| for value in (target, pred) | |
| if value is not None | |
| } | |
| ) | |
| else: | |
| label_values = [str(label) for label in labels] | |
| total = len(pair_list) | |
| correct = sum(1 for target, pred in pair_list if pred is not None and str(target) == str(pred)) | |
| target_total: Counter[str] = Counter() | |
| pred_total: Counter[str] = Counter() | |
| class_correct: Counter[str] = Counter() | |
| confusion: Counter[str] = Counter() | |
| for target, pred in pair_list: | |
| target_s = str(target) | |
| pred_s = "UNPARSED" if pred is None and none_is_wrong else str(pred) | |
| target_total[target_s] += 1 | |
| pred_total[pred_s] += 1 | |
| confusion[f"{target_s}->{pred_s}"] += 1 | |
| if target_s == pred_s: | |
| class_correct[target_s] += 1 | |
| recall: dict[str, float] = {} | |
| precision: dict[str, float] = {} | |
| f1: dict[str, float] = {} | |
| for label in label_values: | |
| recall[label] = class_correct[label] / target_total[label] if target_total[label] else 0.0 | |
| precision[label] = class_correct[label] / pred_total[label] if pred_total[label] else 0.0 | |
| denom = precision[label] + recall[label] | |
| f1[label] = 2 * precision[label] * recall[label] / denom if denom else 0.0 | |
| return { | |
| "accuracy": correct / total if total else None, | |
| "balanced_accuracy": mean(recall.values()) if total and label_values else None, | |
| "macro_f1": mean(f1.values()) if total and label_values else None, | |
| "macro_precision": mean(precision.values()) if total and label_values else None, | |
| "macro_recall": mean(recall.values()) if total and label_values else None, | |
| "precision": precision, | |
| "recall": recall, | |
| "f1": f1, | |
| "confusion": dict(confusion), | |
| "target_counts": dict(target_total), | |
| "pred_counts": dict(pred_total), | |
| } | |
| def parse_success_rate(rows: list[dict[str, Any]], field: str = "pred_parse_ok") -> float | None: | |
| if not rows: | |
| return None | |
| return sum(1 for row in rows if row.get(field)) / len(rows) | |
| def metric_value(summary: dict[str, Any], metric: str) -> float | None: | |
| value = summary.get(metric) | |
| return value if isinstance(value, (int, float)) else None | |
| def bootstrap_sem( | |
| rows: list[dict[str, Any]], | |
| metric: str, | |
| summarize_fn: Callable[[list[dict[str, Any]]], dict[str, Any]], | |
| *, | |
| iterations: int = 500, | |
| seed: int = 17, | |
| ) -> float | None: | |
| if not rows: | |
| return None | |
| rng = random.Random(f"{seed}:{metric}:{len(rows)}") | |
| values: list[float] = [] | |
| for _ in range(iterations): | |
| sample = [rows[rng.randrange(len(rows))] for _ in rows] | |
| value = metric_value(summarize_fn(sample), metric) | |
| if value is not None: | |
| values.append(value) | |
| if not values: | |
| return None | |
| return statistics.stdev(values) if len(values) > 1 else 0.0 | |