Datasets:
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
video-language-model
egocentric-video
laboratory
wet-lab
procedural-monitoring
error-detection
License:
| """Finetune-style monitor-next delta task.""" | |
| from __future__ import annotations | |
| from collections import Counter | |
| from pathlib import Path | |
| from typing import Any | |
| from ..io import BENCHMARK_ROOT, DATA_DIR, manifest_examples, select_shard | |
| from ..metrics import bootstrap_sem, classification_scores | |
| from ..parsing import normalize_step_id, parse_next_step_delta_response | |
| from .base import BenchmarkTask, TaskSpec | |
| class MonitorNextStepTask(BenchmarkTask): | |
| spec = TaskSpec( | |
| name="monitor_next_step", | |
| display_name="Protocol Monitoring Advance Prediction", | |
| default_manifest=DATA_DIR / "monitor_next_step.json", | |
| ) | |
| primary_metric = "advance_step_balanced_accuracy" | |
| def load_examples( | |
| self, | |
| *, | |
| benchmark_root: Path = BENCHMARK_ROOT, | |
| manifest_path: Path | None = None, | |
| video_root: Path | None = None, | |
| num_shards: int = 1, | |
| shard_index: int = 0, | |
| limit: int | None = None, | |
| ) -> list[dict[str, Any]]: | |
| rows = manifest_examples(manifest_path or self.default_manifest) | |
| root = video_root or benchmark_root | |
| for row in rows: | |
| row["task"] = self.name | |
| row["_video_abs"] = str(root / str(row["video_path"])) | |
| rows = sorted(rows, key=lambda row: str(row.get("eval_id"))) | |
| if limit is not None: | |
| rows = rows[:limit] | |
| return select_shard(rows, num_shards, shard_index) | |
| def parse_record(self, row: dict[str, Any]) -> dict[str, Any]: | |
| if row.get("error"): | |
| return row | |
| parsed = parse_next_step_delta_response(str(row.get("raw_response") or "")) | |
| pred_current_norm = normalize_step_id(parsed.get("pred_current_step_id")) | |
| target_current_norm = normalize_step_id(row.get("target_current_step_id")) | |
| target_start_norm = normalize_step_id(row.get("target_start_step_id")) | |
| pred_advances = None | |
| if pred_current_norm is not None and target_start_norm is not None: | |
| pred_advances = pred_current_norm != target_start_norm | |
| row.update( | |
| { | |
| **parsed, | |
| "pred_current_step_id_normalized": pred_current_norm, | |
| "target_current_step_id_normalized": target_current_norm, | |
| "pred_advances_step": pred_advances, | |
| "current_step_correct": pred_current_norm is not None and pred_current_norm == target_current_norm, | |
| } | |
| ) | |
| return row | |
| def _summary(self, rows: list[dict[str, Any]]) -> dict[str, Any]: | |
| parsed = self.parse_rows(rows) | |
| scored = [row for row in parsed if not row.get("error")] | |
| current_correct = 0 | |
| current_parsed = 0 | |
| advance_pairs: list[tuple[str, str | None]] = [] | |
| skipped_pairs: list[tuple[str, str | None]] = [] | |
| skipped_step_ref_correct = 0 | |
| skipped_step_ref_total = 0 | |
| for row in scored: | |
| pred_current = normalize_step_id(row.get("pred_current_step_id")) | |
| target_current = normalize_step_id(row.get("target_current_step_id")) | |
| target_start = normalize_step_id(row.get("target_start_step_id")) | |
| if pred_current is not None: | |
| current_parsed += 1 | |
| current_correct += int(pred_current is not None and pred_current == target_current) | |
| pred_advances = None | |
| if pred_current is not None and target_start is not None: | |
| pred_advances = pred_current != target_start | |
| advance_pairs.append((str(bool(row.get("target_advances_step"))), None if pred_advances is None else str(bool(pred_advances)))) | |
| skipped_pred = row.get("pred_has_step_skipped") | |
| skipped_pairs.append((str(bool(row.get("target_has_error"))), None if skipped_pred is None else str(bool(skipped_pred)))) | |
| if row.get("target_has_error"): | |
| skipped_step_ref_total += 1 | |
| pred_ref = normalize_step_id(row.get("pred_error_step_id")) | |
| target_ref = normalize_step_id(row.get("target_error_step_id")) | |
| skipped_step_ref_correct += int(pred_ref is not None and pred_ref == target_ref) | |
| advance = classification_scores(advance_pairs, labels=["False", "True"]) | |
| skipped = classification_scores(skipped_pairs, labels=["False", "True"]) | |
| n = len(scored) | |
| parse_errors = sum(1 for row in scored if not row.get("pred_parse_ok")) | |
| return { | |
| "task": self.name, | |
| "display_name": self.display_name, | |
| "rows": len(rows), | |
| "scored": n, | |
| "errors": sum(1 for row in rows if row.get("error")), | |
| "parse_errors": parse_errors, | |
| "parse_success_rate": (n - parse_errors) / n if n else None, | |
| "current_step_accuracy": current_correct / n if n else None, | |
| "current_step_accuracy_parsed_only": current_correct / current_parsed if current_parsed else None, | |
| "advance_step_accuracy": advance["accuracy"], | |
| "advance_step_balanced_accuracy": advance["balanced_accuracy"], | |
| "advance_step_macro_f1": advance["macro_f1"], | |
| "advance_step_macro_precision": advance["macro_precision"], | |
| "advance_step_macro_recall": advance["macro_recall"], | |
| "advance_step_precision": advance["precision"], | |
| "advance_step_recall": advance["recall"], | |
| "advance_step_f1": advance["f1"], | |
| "advance_step_confusion": advance["confusion"], | |
| "skipped_step_accuracy": skipped["accuracy"], | |
| "skipped_step_balanced_accuracy": skipped["balanced_accuracy"], | |
| "skipped_step_macro_f1": skipped["macro_f1"], | |
| "skipped_step_macro_precision": skipped["macro_precision"], | |
| "skipped_step_macro_recall": skipped["macro_recall"], | |
| "skipped_step_confusion": skipped["confusion"], | |
| "skipped_step_ref_accuracy": skipped_step_ref_correct / skipped_step_ref_total if skipped_step_ref_total else None, | |
| "task_counts": dict(Counter(str(row.get("task_type")) for row in scored)), | |
| "history_variant_counts": dict(Counter(str(row.get("history_variant")) for row in scored)), | |
| "window_kind_counts": dict(Counter(str(row.get("window_kind")) for row in scored)), | |
| } | |
| def score(self, rows: list[dict[str, Any]]) -> dict[str, Any]: | |
| parsed = self.parse_rows(rows) | |
| summary = self._summary(parsed) | |
| for metric in ( | |
| "advance_step_accuracy", | |
| "advance_step_balanced_accuracy", | |
| "advance_step_macro_f1", | |
| "advance_step_macro_precision", | |
| "advance_step_macro_recall", | |
| "skipped_step_accuracy", | |
| "skipped_step_balanced_accuracy", | |
| "skipped_step_macro_f1", | |
| ): | |
| summary[f"{metric}_sem"] = bootstrap_sem(parsed, metric, self._summary, iterations=200) | |
| return summary | |