Datasets:
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
video-language-model
egocentric-video
laboratory
wet-lab
procedural-monitoring
error-detection
License:
| """Monitoring step-identification task.""" | |
| from __future__ import annotations | |
| from collections import Counter | |
| from pathlib import Path | |
| from typing import Any | |
| from ..io import BENCHMARK_ROOT, DATA_DIR, manifest_examples, select_shard | |
| from ..metrics import bootstrap_sem, classification_scores | |
| from ..parsing import normalize_step_id, parse_monitoring_response | |
| from .base import BenchmarkTask, TaskSpec | |
| class MonitoringStepTask(BenchmarkTask): | |
| spec = TaskSpec( | |
| name="monitoring_step", | |
| display_name="Protocol Monitoring Step Prediction", | |
| default_manifest=DATA_DIR / "monitoring_step_eval.json", | |
| ) | |
| primary_metric = "step_balanced_accuracy" | |
| def load_examples( | |
| self, | |
| *, | |
| benchmark_root: Path = BENCHMARK_ROOT, | |
| manifest_path: Path | None = None, | |
| video_root: Path | None = None, | |
| num_shards: int = 1, | |
| shard_index: int = 0, | |
| limit: int | None = None, | |
| ) -> list[dict[str, Any]]: | |
| rows = manifest_examples(manifest_path or self.default_manifest) | |
| root = video_root or benchmark_root | |
| for row in rows: | |
| row["task"] = self.name | |
| row["_video_abs"] = str(root / str(row["video_path"])) | |
| rows = sorted(rows, key=lambda row: str(row.get("eval_id"))) | |
| if limit is not None: | |
| rows = rows[:limit] | |
| return select_shard(rows, num_shards, shard_index) | |
| def parse_record(self, row: dict[str, Any]) -> dict[str, Any]: | |
| if row.get("error"): | |
| return row | |
| raw = str(row.get("raw_response") or "") | |
| pred_candidate, pred_step = parse_monitoring_response(raw) if raw else (None, None) | |
| pred_step_normalized = normalize_step_id(pred_step) | |
| target_step_normalized = normalize_step_id(row.get("target_step_id")) | |
| row.update( | |
| { | |
| "pred_candidate_matches": pred_candidate, | |
| "pred_observed_step_id": pred_step, | |
| "pred_observed_step_id_normalized": pred_step_normalized, | |
| "target_step_id_normalized": target_step_normalized, | |
| "pred_parse_ok": pred_step_normalized is not None, | |
| "candidate_correct": ( | |
| pred_candidate is not None | |
| and bool(pred_candidate) == bool(row.get("target_candidate_matches")) | |
| ) | |
| if row.get("target_candidate_matches") is not None | |
| else None, | |
| "observed_step_correct": pred_step_normalized is not None | |
| and pred_step_normalized == target_step_normalized, | |
| } | |
| ) | |
| return row | |
| def _summary(self, rows: list[dict[str, Any]]) -> dict[str, Any]: | |
| parsed = self.parse_rows(rows) | |
| scored = [row for row in parsed if not row.get("error")] | |
| step_rows = [row for row in scored if str(row.get("task_type") or "step_identification") == "step_identification"] | |
| pairs = [ | |
| (normalize_step_id(row.get("target_step_id")), normalize_step_id(row.get("pred_observed_step_id"))) | |
| for row in step_rows | |
| if normalize_step_id(row.get("target_step_id")) is not None | |
| ] | |
| labels = sorted({str(target) for target, _ in pairs}) | |
| scores = classification_scores(pairs, labels=labels) | |
| candidate_rows = [row for row in scored if row.get("target_candidate_matches") is not None] | |
| candidate_correct = sum(1 for row in candidate_rows if row.get("candidate_correct")) | |
| parse_errors = sum(1 for row in scored if not row.get("pred_parse_ok")) | |
| return { | |
| "task": self.name, | |
| "display_name": self.display_name, | |
| "rows": len(rows), | |
| "scored": len(scored), | |
| "errors": sum(1 for row in rows if row.get("error")), | |
| "parse_errors": parse_errors, | |
| "parse_success_rate": (len(scored) - parse_errors) / len(scored) if scored else None, | |
| "candidate_match_rows": len(candidate_rows), | |
| "candidate_match_accuracy": candidate_correct / len(candidate_rows) if candidate_rows else None, | |
| "step_identification_rows": len(step_rows), | |
| "step_identification_accuracy": scores["accuracy"], | |
| "observed_step_id_accuracy": scores["accuracy"], | |
| "step_parse_success_rate": (len(step_rows) - parse_errors) / len(step_rows) if step_rows else None, | |
| "step_balanced_accuracy": scores["balanced_accuracy"], | |
| "step_macro_f1": scores["macro_f1"], | |
| "step_macro_precision": scores["macro_precision"], | |
| "step_macro_recall": scores["macro_recall"], | |
| "step_precision_by_id": scores["precision"], | |
| "step_recall_by_id": scores["recall"], | |
| "step_f1_by_id": scores["f1"], | |
| "step_confusion": scores["confusion"], | |
| "task_counts": dict(Counter(str(row.get("task_type")) for row in scored)), | |
| "target_counts": scores["target_counts"], | |
| "pred_counts": scores["pred_counts"], | |
| } | |
| def score(self, rows: list[dict[str, Any]]) -> dict[str, Any]: | |
| parsed = self.parse_rows(rows) | |
| summary = self._summary(parsed) | |
| for metric in ( | |
| "step_identification_accuracy", | |
| "step_balanced_accuracy", | |
| "step_macro_f1", | |
| "step_macro_precision", | |
| "step_macro_recall", | |
| ): | |
| summary[f"{metric}_sem"] = bootstrap_sem(parsed, metric, self._summary, iterations=200) | |
| return summary | |