Update README.md

README.md

@@ -12,7 +12,6 @@ tags:
 - NA
 ---
 
-
 # Thal-Kak local MSA, template databases
 
 The sequence and template databases that the local MSA modes of
@@ -28,7 +27,7 @@ local template search on any of them.
 > **These are derived databases, not upstream mirrors.** Each archive was
 > re-clustered and/or reformatted here. Numbers computed on them will not match
 > numbers computed on the upstream distribution. What was changed is recorded
-> per source in [`LICENSE`](LICENSE), under `Changes`.
+> per source in [`LICENSE`](https://huggingface.co/datasets/cssbsnu/Thal-Kak_local_db/blob/main/LICENSE), under `Changes`.
 
 ## At a glance
 
@@ -144,9 +143,14 @@ running the installer — it reads that file and never writes it.
 pip install -U "huggingface_hub[cli]"
 
 hf download cssbsnu/Thal-Kak_local_db --repo-type dataset \
-    --include "hhblits/envhog.tar.zst" --local-dir ./dl
+    --include "hhblits/envhog.tar.zst" "LICENSE" --local-dir ./dl
 ```
 
+`--include` filters the whole repo, so name `LICENSE` alongside the archives —
+otherwise the terms that govern what you just downloaded stay behind on the
+Hub. A plain `hf download <repo> --repo-type dataset` takes everything and
+needs no such care.
+
 Unpacking by hand is possible (`zstd -dc <archive> | tar -x -C <dir>`) but you
 then have to reproduce the layout yourself: each database lives at
 `<family root>/<key>/`, with every file inside renamed from its build-time stem
@@ -169,13 +173,34 @@ overhead to a single archive.
 Everything, all four families: **5.41 TiB** installed, ~5.7 TiB peak when
 installed family by family.
 
+## Integrity
+
+`install_db.sh` checks these automatically. To verify a manual download:
+
+```bash
+sha256sum -c <<'SUMS'
+4870b0e13856dcc3f024ff15c6b9b4a34ea6a2072b12a7bd30c1e0f78e35a601  mmseqs/uniref100_2026_01.tar.zst
+1710e951f0d8e18622c0daa82065c0e571e17f4c0a56594be06fd8ddd4688694  mmseqs/bfd_reduced.tar.zst
+0b366a52685a5359daecca933d8d072e43db01da2fb4bf73ce4b9b394ee8d485  mmseqs/mgnify_clusters.tar.zst
+342935bcace264cc26cd554781a33e0c820ce16a5486eb81d05ce5b91963c9cc  mmseqs/logan_human.tar.zst
+7cc390b189b72ed46af69952355466759e6db4f7abd3ac83d9b83f2b7c8243a5  mmseqs/envhog_std.tar.zst
+15a2efae5962ede25872eb29bcbf28165b373b100d57dfa86e3aab26e72ba8fd  template/BioMolDB_20260224.tar.zst
+583b3fa79958e68699dac17c26a1dd61dbee3a88d10295bbad0f29e93472c41d  hhblits/uniref100.tar.zst
+e6d0e30fb4699e2137696505945feb57163e991efa868bae1e85acd7a9610358  hhblits/uniref30_2023_02.tar.zst
+fc5385d6e42ef4a3589323d66c503264eb50cb1024d44d8384443c598450eb1f  hhblits/mgnify_clusters.tar.zst
+a6db507c0b7204a2d8e1bc9b7cdd9d3c811450ae9625e9620ea3b3b878eefca6  hhblits/logan_human.tar.zst
+4948bb337a6c58811a7b41a73f27f725a45006c0db309f49e124d4252e1be0c3  hhblits/logan_nonhuman.tar.zst
+2ab6318847d65b877b8e3e28418ebf8fbd64e0ab7b80d9beb89227b4bad8fa0d  hhblits/envhog.tar.zst
+SUMS
+```
+
 ## License and attribution
 
 **The Apache-2.0 license on the Thal-Kak source code does not apply to anything
 in this repository.** Each archive carries the license of the source it derives
 from; no archive mixes sources. The authoritative record — upstream license,
 the license we place on our archive, attribution, citation, and exactly what we
-changed — is [`LICENSE`](LICENSE). The summary:
+changed — is [`LICENSE`](https://huggingface.co/datasets/cssbsnu/Thal-Kak_local_db/blob/main/LICENSE). The summary:
 
 | Archives | License we grant | Source |
 |---|---|---|
@@ -207,11 +232,11 @@ for a particular purpose.
 ## Citing
 
 Cite the upstream database for whichever archive you used — each entry in
-[`LICENSE`](LICENSE) carries its `Cite` line. For the pipeline itself, see the
+[`LICENSE`](https://huggingface.co/datasets/cssbsnu/Thal-Kak_local_db/blob/main/LICENSE) carries its `Cite` line. For the pipeline itself, see the
 [Thal-Kak repository](https://github.com/CSSB-SNU/Thal-Kak).
 
 ## Links
 
 - Pipeline: <https://github.com/CSSB-SNU/Thal-Kak>
 - Installer documentation: `install/README.md` in that repository
-- Per-archive provenance and licensing: [`LICENSE`](LICENSE)
+- Per-archive provenance and licensing: [`LICENSE`](https://huggingface.co/datasets/cssbsnu/Thal-Kak_local_db/blob/main/LICENSE)