Create README.md

README.md

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+---
+license: apache-2.0
+---
+
+## About
+
+DEER (Dense Enzyme Retrieval) provides a method for finding functionally related human-bacteria isozymes using learned dense vector representations (embeddings). 
+This huggingface repository contains an example dataset for applying the DEER model for isozyme retrieval.
+
+The working example dataset contains 5,849 enzyme structures in PDB format, including:
+- 1,636 eukaryota enzymes as templates
+- 4,213 bacteria enzymes as the database
+
+The full codes and tutorial for using this dataset are available at GitHub: https://github.com/WangJiuming/deer/tree/main.
+
+## Citation
+
+If you use the model in your research, please cite our paper with the following.
+
+```
+@misc{liu2025Exploring,
+  author={Liu, H. and Shen, J. and others},
+  title={Exploring Functional Insights into the Human Gut Microbiome via the Structural Proteome},
+  year={2025},
+  note={Manuscript under revision}
+}
+```