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README.md
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Dataset Description
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This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database.
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It contains the most recent version (2016-Full-genome), composed of 1,609 high-quality full-length genomes.
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Languages: English
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Dataset Structure
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Data Instances
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Each column represents the protein amino acid sequence of the HIV genome.
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The ID field indicates the Genbank reference ID for future cross-referencing.
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There are 1,609 full length HIV genomes.
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Data Splits: None
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Dataset Creation
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Curation Rationale: This dataset was curated to train a model (HIV-BERT) designed to predict a variety of sequence-dependent features regarding HIV.
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Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/21/2021.
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Considerations for Using the Data
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Social Impact of Dataset: This dataset can be used to study sequence-dependent features of HIV, a virus that has claimed the lives of many individuals globally in the last few decades.
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Discussion of Biases: This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database full genome database and contains a representative sample from each subtype and geographic region.
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Additional Information:
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- Dataset Curators: Will Dampier
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- Citation Information: TBA
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# Dataset Description
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## Dataset Summary
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This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database.
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It contains the most recent version (2016-Full-genome), composed of 1,609 high-quality full-length genomes.
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Languages: English
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## Dataset Structure
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### Data Instances
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Each column represents the protein amino acid sequence of the HIV genome.
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| 18 |
The ID field indicates the Genbank reference ID for future cross-referencing.
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There are 1,609 full length HIV genomes.
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Data Splits: None
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## Dataset Creation
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Curation Rationale: This dataset was curated to train a model (HIV-BERT) designed to predict a variety of sequence-dependent features regarding HIV.
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| 28 |
|
| 29 |
Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/21/2021.
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| 30 |
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## Considerations for Using the Data
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Social Impact of Dataset: This dataset can be used to study sequence-dependent features of HIV, a virus that has claimed the lives of many individuals globally in the last few decades.
|
| 34 |
|
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Discussion of Biases: This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database full genome database and contains a representative sample from each subtype and geographic region.
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| 36 |
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## Additional Information:
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- Dataset Curators: Will Dampier
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- Citation Information: TBA
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