Datasets:
Tasks:
Graph Machine Learning
Modalities:
Text
Formats:
json
Languages:
English
Size:
< 1K
ArXiv:
Tags:
hypergraph
Update README.md
Browse files
README.md
CHANGED
|
@@ -12,6 +12,15 @@ task_categories:
|
|
| 12 |
|
| 13 |
NDC-classes is an undirected hypergraph built from the U.S. FDA’s National Drug Code (NDC) Directory, designed for higher-order network / hypergraph machine learning in the drug domain. Each hyperedge corresponds to a drug and connects the set of pharmacologic/therapeutic class labels assigned to that drug, while nodes represent the class labels themselves (e.g., “serotonin reuptake inhibitor”), capturing co-classification patterns as higher-order interactions rather than pairwise links.
|
| 14 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 15 |
<div align="center">
|
| 16 |
<table>
|
| 17 |
<tbody>
|
|
@@ -38,6 +47,8 @@ NDC-classes is an undirected hypergraph built from the U.S. FDA’s National Dru
|
|
| 38 |
</table>
|
| 39 |
</div>
|
| 40 |
|
|
|
|
|
|
|
| 41 |
The hypergraph is stored in HIF (Hypergraph Interchange Format) as a JSON object, following the schema used to exchange higher-order network data across tools. Concretely, the dataset provides the canonical HIF fields-network-type, metadata, nodes, edges, and incidences-so you can reconstruct the full incidence structure without additional processing.
|
| 42 |
|
| 43 |
In addition to the raw hypergraph topology, vector features are provided for both nodes and hyperedges (in their attribute dictionaries), enabling out-of-the-box experimentation with representation learning and downstream tasks:
|
|
@@ -45,7 +56,9 @@ In addition to the raw hypergraph topology, vector features are provided for bot
|
|
| 45 |
- Node2Vec embeddings: random-walk–based structural embeddings.
|
| 46 |
- VilLain embeddings: self-supervised hypergraph representation learning via virtual label propagation.
|
| 47 |
|
| 48 |
-
Basic statistics (as packaged here):
|
|
|
|
|
|
|
| 49 |
|
| 50 |
```
|
| 51 |
@article{Benson-2018-simplicial,
|
|
|
|
| 12 |
|
| 13 |
NDC-classes is an undirected hypergraph built from the U.S. FDA’s National Drug Code (NDC) Directory, designed for higher-order network / hypergraph machine learning in the drug domain. Each hyperedge corresponds to a drug and connects the set of pharmacologic/therapeutic class labels assigned to that drug, while nodes represent the class labels themselves (e.g., “serotonin reuptake inhibitor”), capturing co-classification patterns as higher-order interactions rather than pairwise links.
|
| 14 |
|
| 15 |
+
## Usage
|
| 16 |
+
|
| 17 |
+
```python
|
| 18 |
+
dataset = load_dataset("daqh/NDC-classes", split="full")
|
| 19 |
+
hypergraphs = [xgi.from_hif_dict(d, nodetype=int, edgetype=int) for d in dataset]
|
| 20 |
+
```
|
| 21 |
+
|
| 22 |
+
## Statistics
|
| 23 |
+
|
| 24 |
<div align="center">
|
| 25 |
<table>
|
| 26 |
<tbody>
|
|
|
|
| 47 |
</table>
|
| 48 |
</div>
|
| 49 |
|
| 50 |
+
## Content
|
| 51 |
+
|
| 52 |
The hypergraph is stored in HIF (Hypergraph Interchange Format) as a JSON object, following the schema used to exchange higher-order network data across tools. Concretely, the dataset provides the canonical HIF fields-network-type, metadata, nodes, edges, and incidences-so you can reconstruct the full incidence structure without additional processing.
|
| 53 |
|
| 54 |
In addition to the raw hypergraph topology, vector features are provided for both nodes and hyperedges (in their attribute dictionaries), enabling out-of-the-box experimentation with representation learning and downstream tasks:
|
|
|
|
| 56 |
- Node2Vec embeddings: random-walk–based structural embeddings.
|
| 57 |
- VilLain embeddings: self-supervised hypergraph representation learning via virtual label propagation.
|
| 58 |
|
| 59 |
+
Basic statistics (as packaged here): 327 nodes, 12,799 hyperedges, 1 connected component.
|
| 60 |
+
|
| 61 |
+
## Citation
|
| 62 |
|
| 63 |
```
|
| 64 |
@article{Benson-2018-simplicial,
|