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fmriprep/sub-01/func/sub-01_task-freerecall_space-MNI152NLin2009cAsym_desc-brain_mask.json

@@ -0,0 +1,5 @@
+{
+  "RawSources": [
+    "sub-01/func/sub-01_task-freerecall_bold.nii.gz"
+  ]
+}

fmriprep/sub-01/func/sub-01_task-freerecall_space-MNI152NLin2009cAsym_desc-preproc_bold.json

@@ -0,0 +1,5 @@
+{
+  "RepetitionTime": 1.5,
+  "SkullStripped": false,
+  "TaskName": "free recall"
+}

fmriprep/sub-01/func/sub-01_task-sherlockPart1_space-MNI152NLin2009cAsym_desc-brain_mask.json

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+{
+  "RawSources": [
+    "sub-01/func/sub-01_task-sherlockPart1_bold.nii.gz"
+  ]
+}

fmriprep/sub-01/func/sub-01_task-sherlockPart1_space-MNI152NLin2009cAsym_desc-preproc_bold.json

@@ -0,0 +1,5 @@
+{
+  "RepetitionTime": 1.5,
+  "SkullStripped": false,
+  "TaskName": "part 1 of Sherlock episode"
+}

fmriprep/sub-01/func/sub-01_task-sherlockPart2_space-MNI152NLin2009cAsym_desc-brain_mask.json

@@ -0,0 +1,5 @@
+{
+  "RawSources": [
+    "sub-01/func/sub-01_task-sherlockPart2_bold.nii.gz"
+  ]
+}

fmriprep/sub-01/func/sub-01_task-sherlockPart2_space-MNI152NLin2009cAsym_desc-preproc_bold.json

@@ -0,0 +1,5 @@
+{
+  "RepetitionTime": 1.5,
+  "SkullStripped": false,
+  "TaskName": "part 2 of Sherlock episode"
+}

fmriprep/sub-01/log/20200518-225939_b4fffccf-66fc-48c4-90d6-8c282d0e51b8/crash-20200518-230510-f00275v-std_tpms.a0-67919305-b776-4c93-97d2-4d4d81aedd12.txt

@@ -0,0 +1,48 @@
+Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.anat_norm_wf.std_tpms
+Working directory: /dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms
+
+Node inputs:
+
+args = <undefined>
+default_value = 0.0
+dimension = 3
+environ = {'NSLOTS': '1'}
+float = True
+input_image = <undefined>
+input_image_type = <undefined>
+interpolation = Gaussian
+interpolation_parameters = <undefined>
+invert_transform_flags = <undefined>
+num_threads = 1
+out_postfix = _trans
+output_image = <undefined>
+print_out_composite_warp_file = <undefined>
+reference_image = <undefined>
+transforms = <undefined>
+
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 292, in _send_procs_to_workers
+    num_subnodes = self.procs[jobid].num_subnodes()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1309, in num_subnodes
+    self._get_inputs()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1323, in _get_inputs
+    super(MapNode, self)._get_inputs()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs
+    outputs = _load_resultfile(results_fname).outputs
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile
+    result = loadpkl(results_file)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 672, in loadpkl
+    raise e
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 649, in loadpkl
+    unpkl = pickle.loads(pkl_contents)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1440, in __setstate__
+    self.trait_set( trait_change_notify = trait_change_notify, **state )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1543, in trait_set
+    setattr( self, name, value )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 329, in validate
+    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 134, in validate
+    self.error(objekt, name, str(value))
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
+    value )
+traits.trait_errors.TraitError: The 't1w_file' trait of a _TemplateFlowSelectOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/dartfs-hpc/rc/home/1/f0034g1/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz' <class 'str'> was specified.

fmriprep/sub-01/log/20200518-225939_b4fffccf-66fc-48c4-90d6-8c282d0e51b8/crash-20200518-230517-f00275v-std_dseg.a0-0c98d9a5-0038-4e9a-aa07-d0a84908a3e0.txt

@@ -0,0 +1,50 @@
+Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.anat_norm_wf.std_dseg
+Working directory: /dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_dseg
+
+Node inputs:
+
+args = <undefined>
+default_value = 0.0
+dimension = 3
+environ = {'NSLOTS': '1'}
+float = True
+input_image = <undefined>
+input_image_type = <undefined>
+interpolation = MultiLabel
+interpolation_parameters = <undefined>
+invert_transform_flags = <undefined>
+num_threads = 1
+out_postfix = _trans
+output_image = <undefined>
+print_out_composite_warp_file = <undefined>
+reference_image = <undefined>
+transforms = ['/dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5']
+
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
+    result["result"] = node.run(updatehash=updatehash)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 443, in run
+    cached, updated = self.is_cached()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 332, in is_cached
+    hashed_inputs, hashvalue = self._get_hashval()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 538, in _get_hashval
+    self._get_inputs()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs
+    outputs = _load_resultfile(results_fname).outputs
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile
+    result = loadpkl(results_file)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 672, in loadpkl
+    raise e
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 649, in loadpkl
+    unpkl = pickle.loads(pkl_contents)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1440, in __setstate__
+    self.trait_set( trait_change_notify = trait_change_notify, **state )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1543, in trait_set
+    setattr( self, name, value )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 329, in validate
+    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 134, in validate
+    self.error(objekt, name, str(value))
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
+    value )
+traits.trait_errors.TraitError: The 't1w_file' trait of a _TemplateFlowSelectOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/dartfs-hpc/rc/home/1/f0034g1/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz' <class 'str'> was specified.

fmriprep/sub-01/log/20200518-225939_b4fffccf-66fc-48c4-90d6-8c282d0e51b8/crash-20200518-230517-f00275v-std_mask.a0-4503d64f-130b-464d-bafa-b9b9c1e25787.txt

@@ -0,0 +1,50 @@
+Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.anat_norm_wf.std_mask
+Working directory: /dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_mask
+
+Node inputs:
+
+args = <undefined>
+default_value = 0.0
+dimension = 3
+environ = {'NSLOTS': '1'}
+float = True
+input_image = <undefined>
+input_image_type = <undefined>
+interpolation = MultiLabel
+interpolation_parameters = <undefined>
+invert_transform_flags = <undefined>
+num_threads = 1
+out_postfix = _trans
+output_image = <undefined>
+print_out_composite_warp_file = <undefined>
+reference_image = <undefined>
+transforms = ['/dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5']
+
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
+    result["result"] = node.run(updatehash=updatehash)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 443, in run
+    cached, updated = self.is_cached()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 332, in is_cached
+    hashed_inputs, hashvalue = self._get_hashval()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 538, in _get_hashval
+    self._get_inputs()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs
+    outputs = _load_resultfile(results_fname).outputs
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile
+    result = loadpkl(results_file)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 672, in loadpkl
+    raise e
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 649, in loadpkl
+    unpkl = pickle.loads(pkl_contents)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1440, in __setstate__
+    self.trait_set( trait_change_notify = trait_change_notify, **state )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1543, in trait_set
+    setattr( self, name, value )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 329, in validate
+    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 134, in validate
+    self.error(objekt, name, str(value))
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
+    value )
+traits.trait_errors.TraitError: The 't1w_file' trait of a _TemplateFlowSelectOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/dartfs-hpc/rc/home/1/f0034g1/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz' <class 'str'> was specified.

fmriprep/sub-01/log/20200518-225939_b4fffccf-66fc-48c4-90d6-8c282d0e51b8/crash-20200518-230517-f00275v-tpl_moving.a0-763a1ef1-ebcb-4d7a-accf-5093077a539b.txt

@@ -0,0 +1,50 @@
+Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
+Working directory: /dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving
+
+Node inputs:
+
+args = <undefined>
+default_value = 0.0
+dimension = 3
+environ = {'NSLOTS': '1'}
+float = True
+input_image = <undefined>
+input_image_type = <undefined>
+interpolation = LanczosWindowedSinc
+interpolation_parameters = <undefined>
+invert_transform_flags = <undefined>
+num_threads = 1
+out_postfix = _trans
+output_image = <undefined>
+print_out_composite_warp_file = <undefined>
+reference_image = <undefined>
+transforms = ['/dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5']
+
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
+    result["result"] = node.run(updatehash=updatehash)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 443, in run
+    cached, updated = self.is_cached()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 332, in is_cached
+    hashed_inputs, hashvalue = self._get_hashval()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 538, in _get_hashval
+    self._get_inputs()
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs
+    outputs = _load_resultfile(results_fname).outputs
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile
+    result = loadpkl(results_file)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 672, in loadpkl
+    raise e
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 649, in loadpkl
+    unpkl = pickle.loads(pkl_contents)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1440, in __setstate__
+    self.trait_set( trait_change_notify = trait_change_notify, **state )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1543, in trait_set
+    setattr( self, name, value )
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 329, in validate
+    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 134, in validate
+    self.error(objekt, name, str(value))
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
+    value )
+traits.trait_errors.TraitError: The 't1w_file' trait of a _TemplateFlowSelectOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/dartfs-hpc/rc/home/1/f0034g1/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz' <class 'str'> was specified.

fmriprep/sub-08/anat/sub-08_desc-brain_mask.json

@@ -0,0 +1,6 @@
+{
+  "RawSources": [
+    "sub-08/anat/sub-08_T1w.nii.gz"
+  ],
+  "Type": "Brain"
+}

fmriprep/sub-08/anat/sub-08_desc-preproc_T1w.json

@@ -0,0 +1,3 @@
+{
+  "SkullStripped": false
+}

fmriprep/sub-08/anat/sub-08_space-MNI152NLin2009cAsym_desc-brain_mask.json

@@ -0,0 +1,4 @@
+{
+  "RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_desc-brain_mask.nii.gz",
+  "Type": "Brain"
+}

fmriprep/sub-08/anat/sub-08_space-MNI152NLin2009cAsym_desc-preproc_T1w.json

@@ -0,0 +1,3 @@
+{
+  "SkullStripped": true
+}