Commit
·
f23d3fc
1
Parent(s):
c2ee4f4
draft
Browse files- README.md +49 -0
- amazonian_fish_classifier.py +113 -0
README.md
ADDED
|
@@ -0,0 +1,49 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
dataset_info:
|
| 3 |
+
features:
|
| 4 |
+
- name: image
|
| 5 |
+
dtype: image
|
| 6 |
+
- name: label
|
| 7 |
+
dtype:
|
| 8 |
+
class_label:
|
| 9 |
+
names:
|
| 10 |
+
'0': Ancistrus
|
| 11 |
+
'1': Apistogramma
|
| 12 |
+
'2': Astyanax
|
| 13 |
+
'3': Bario
|
| 14 |
+
'4': Bryconops
|
| 15 |
+
'5': Bujurquina
|
| 16 |
+
'6': Bunocephalus
|
| 17 |
+
'7': Characidium
|
| 18 |
+
'8': Charax
|
| 19 |
+
'9': Copella
|
| 20 |
+
'10': Corydoras
|
| 21 |
+
'11': Creagrutus
|
| 22 |
+
'12': Curimata
|
| 23 |
+
'13': Doras
|
| 24 |
+
'14': Erythrinus
|
| 25 |
+
'15': Gasteropelecus
|
| 26 |
+
'16': Gymnotus
|
| 27 |
+
'17': Hemigrammus
|
| 28 |
+
'18': Hyphessobrycon
|
| 29 |
+
'19': Knodus
|
| 30 |
+
'20': Moenkhausia
|
| 31 |
+
'21': Otocinclus
|
| 32 |
+
'22': Oxyropsis
|
| 33 |
+
'23': Phenacogaster
|
| 34 |
+
'24': Pimelodella
|
| 35 |
+
'25': Prochilodus
|
| 36 |
+
'26': Pygocentrus
|
| 37 |
+
'27': Pyrrhulina
|
| 38 |
+
'28': Rineloricaria
|
| 39 |
+
'29': Sorubim
|
| 40 |
+
'30': Tatia
|
| 41 |
+
'31': Tetragonopterus
|
| 42 |
+
'32': Tyttocharax
|
| 43 |
+
splits:
|
| 44 |
+
- name: train
|
| 45 |
+
num_bytes: 578234
|
| 46 |
+
num_examples: 3068
|
| 47 |
+
download_size: 330399200
|
| 48 |
+
dataset_size: 578234
|
| 49 |
+
---
|
amazonian_fish_classifier.py
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
|
| 2 |
+
#
|
| 3 |
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
| 4 |
+
# you may not use this file except in compliance with the License.
|
| 5 |
+
# You may obtain a copy of the License at
|
| 6 |
+
#
|
| 7 |
+
# http://www.apache.org/licenses/LICENSE-2.0
|
| 8 |
+
#
|
| 9 |
+
# Unless required by applicable law or agreed to in writing, software
|
| 10 |
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
| 11 |
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
| 12 |
+
# See the License for the specific language governing permissions and
|
| 13 |
+
# limitations under the License.
|
| 14 |
+
"""TODO."""
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
import os
|
| 18 |
+
from pathlib import Path
|
| 19 |
+
import pandas as pd
|
| 20 |
+
import datasets
|
| 21 |
+
|
| 22 |
+
_CITATION = """TODO"""
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
_DESCRIPTION = """\
|
| 26 |
+
TODO
|
| 27 |
+
"""
|
| 28 |
+
|
| 29 |
+
_HOMEPAGE = "https://doi.org/10.25573/data.17314730.v1"
|
| 30 |
+
|
| 31 |
+
_LICENSE = "CC BY 4.0"
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
_URLS = {
|
| 35 |
+
"images": "https://smithsonian.figshare.com/ndownloader/files/31975544",
|
| 36 |
+
}
|
| 37 |
+
|
| 38 |
+
|
| 39 |
+
class AmazonianFish(datasets.GeneratorBasedBuilder):
|
| 40 |
+
"""TODO"""
|
| 41 |
+
|
| 42 |
+
VERSION = datasets.Version("1.1.0")
|
| 43 |
+
|
| 44 |
+
def _info(self):
|
| 45 |
+
features = datasets.Features(
|
| 46 |
+
{
|
| 47 |
+
"image": datasets.Image(),
|
| 48 |
+
"label": datasets.ClassLabel(
|
| 49 |
+
names=[
|
| 50 |
+
"Ancistrus",
|
| 51 |
+
"Apistogramma",
|
| 52 |
+
"Astyanax",
|
| 53 |
+
"Bario",
|
| 54 |
+
"Bryconops",
|
| 55 |
+
"Bujurquina",
|
| 56 |
+
"Bunocephalus",
|
| 57 |
+
"Characidium",
|
| 58 |
+
"Charax",
|
| 59 |
+
"Copella",
|
| 60 |
+
"Corydoras",
|
| 61 |
+
"Creagrutus",
|
| 62 |
+
"Curimata",
|
| 63 |
+
"Doras",
|
| 64 |
+
"Erythrinus",
|
| 65 |
+
"Gasteropelecus",
|
| 66 |
+
"Gymnotus",
|
| 67 |
+
"Hemigrammus",
|
| 68 |
+
"Hyphessobrycon",
|
| 69 |
+
"Knodus",
|
| 70 |
+
"Moenkhausia",
|
| 71 |
+
"Otocinclus",
|
| 72 |
+
"Oxyropsis",
|
| 73 |
+
"Phenacogaster",
|
| 74 |
+
"Pimelodella",
|
| 75 |
+
"Prochilodus",
|
| 76 |
+
"Pygocentrus",
|
| 77 |
+
"Pyrrhulina",
|
| 78 |
+
"Rineloricaria",
|
| 79 |
+
"Sorubim",
|
| 80 |
+
"Tatia",
|
| 81 |
+
"Tetragonopterus",
|
| 82 |
+
"Tyttocharax",
|
| 83 |
+
]
|
| 84 |
+
),
|
| 85 |
+
}
|
| 86 |
+
)
|
| 87 |
+
|
| 88 |
+
return datasets.DatasetInfo(
|
| 89 |
+
description=_DESCRIPTION,
|
| 90 |
+
features=features,
|
| 91 |
+
homepage=_HOMEPAGE,
|
| 92 |
+
license=_LICENSE,
|
| 93 |
+
citation=_CITATION,
|
| 94 |
+
)
|
| 95 |
+
|
| 96 |
+
def _split_generators(self, dl_manager):
|
| 97 |
+
images = dl_manager.download_and_extract(_URLS["images"])
|
| 98 |
+
return [
|
| 99 |
+
datasets.SplitGenerator(
|
| 100 |
+
name=datasets.Split.TRAIN,
|
| 101 |
+
gen_kwargs={
|
| 102 |
+
"images": os.path.join(images,"training_images"),
|
| 103 |
+
},
|
| 104 |
+
),
|
| 105 |
+
]
|
| 106 |
+
|
| 107 |
+
def _generate_examples(self, images):
|
| 108 |
+
id_ = 0
|
| 109 |
+
for example in Path(images).rglob("*.jpg"):
|
| 110 |
+
if example.name.startswith("._"):
|
| 111 |
+
continue
|
| 112 |
+
id_ += 1
|
| 113 |
+
yield id_, {"image": str(example), "label": example.parent.name}
|