| Command-line: "/tmp_home/simpoint -maxK 5 -dim 100 -fixedLength off -numInitSeeds 10 -loadFVFile /work/simpoint_flow/sqlite/fingerprint/bbfp.345 -saveSimpoints /work/simpoint_flow/sqlite/simpoints/opt.p -saveSimpointWeights /work/simpoint_flow/sqlite/simpoints/opt.w -saveVectorWeights /work/simpoint_flow/sqlite/simpoints/vector.w -saveLabels /work/simpoint_flow/sqlite/simpoints/opt.l -coveragePct .99" |
| Using these options (*** indicates user-specified option): |
| *** -loadFVFile : /work/simpoint_flow/sqlite/fingerprint/bbfp.345 |
| -k : search |
| -iters : 100 |
| *** -dim : 100 |
| *** -maxK : 5 |
| *** -numInitSeeds : 10 |
| *** -coveragePct : 0.99 |
| -bicThreshold : 0.9 |
| -saveAll : false |
| -initkm : samp |
| *** -saveLabels : /work/simpoint_flow/sqlite/simpoints/opt.l |
| *** -saveSimpoints : /work/simpoint_flow/sqlite/simpoints/opt.p |
| *** -saveSimpointWeights : /work/simpoint_flow/sqlite/simpoints/opt.w |
| *** -saveVectorWeights : /work/simpoint_flow/sqlite/simpoints/vector.w |
| -saveInitCtrs : |
| -saveFinalCtrs : |
| -saveVectorsTxtFmt : |
| -saveVectorsBinFmt : |
| -saveProjMatrixTxtFmt : |
| -saveProjMatrixBinFmt : |
| -loadVectorsTxtFmt : |
| -loadVectorsBinFmt : |
| -loadProjMatrixTxtFmt : |
| -loadProjMatrixBinFmt : |
| -loadInitCtrs : |
| -loadInitLabels : |
| -loadVectorWeights : |
| -inputVectorsGzipped : false |
| *** -fixedLength : off |
| -numFVs : -1 |
| -FVDim : -1 |
| -sampleSize : -1 |
| -seedkm : 493575226 |
| -seedproj : 2042712918 |
| -seedsample : 385089224 |
| -verbose : 0 |
| |
| Loading data from frequency vector file '/work/simpoint_flow/sqlite/fingerprint/bbfp.345' (size: 57x7974) |
| Created random projection matrix (size: 7974x100) |
| Loaded and projected frequency vector file |
| Saving weights of each input vector to file '/work/simpoint_flow/sqlite/simpoints/vector.w' |
| Searching for best clustering for k <= 5 |
|
|
| |
| Run number 1 of at most 5, k = 1 |
| |
| |
| Initialization seed trial #1 of 10; initialization seed = 493575226 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #2 of 10; initialization seed = 493575227 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #3 of 10; initialization seed = 493575228 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #4 of 10; initialization seed = 493575229 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #5 of 10; initialization seed = 493575230 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #6 of 10; initialization seed = 493575231 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #7 of 10; initialization seed = 493575232 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #8 of 10; initialization seed = 493575233 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #9 of 10; initialization seed = 493575234 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| |
| Initialization seed trial #10 of 10; initialization seed = 493575235 |
| |
| Initialized k-means centers using random sampling: 1 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 10014.2 |
| Distortion: 9.25302 |
| Distortions/cluster: 9.25302 |
| Variance: 0.165233 |
| Variances/cluster: 0.165233 |
| The best initialization seed trial was #1 |
|
|
| |
| Run number 2 of at most 5, k = 5 |
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| |
| Initialization seed trial #1 of 10; initialization seed = 493575236 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14135.4 |
| Distortion: 1.5987 |
| Distortions/cluster: 0.0523522 0.053997 0.0281982 1.46416 0 |
| Variance: 0.0307443 |
| Variances/cluster: 0.0510373 0.00409678 0.00226563 0.0555703 0 |
| |
| Initialization seed trial #2 of 10; initialization seed = 493575237 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 19135.6 |
| Distortion: 0.274746 |
| Distortions/cluster: 0.040207 0.0590775 0.0198702 0.13624 0.0193518 |
| Variance: 0.00528359 |
| Variances/cluster: 0.00330447 0.00448225 0.0193712 0.0101226 0.00159045 |
| |
| Initialization seed trial #3 of 10; initialization seed = 493575238 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14084.7 |
| Distortion: 1.62546 |
| Distortions/cluster: 0.0167407 1.46416 8.29064e-34 2.35169e-06 0.144562 |
| Variance: 0.0312589 |
| Variances/cluster: 0.0163203 0.0555703 6.43618e-32 2.25683e-07 0.0101853 |
| |
| Initialization seed trial #4 of 10; initialization seed = 493575239 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 19098.5 |
| Distortion: 0.278186 |
| Distortions/cluster: 0.0578237 0.0193518 0.0590775 0.13624 0.00569292 |
| Variance: 0.00534973 |
| Variances/cluster: 0.0283638 0.00159045 0.00448225 0.0101226 0.000510367 |
| |
| Initialization seed trial #5 of 10; initialization seed = 493575240 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 18754.9 |
| Distortion: 0.314029 |
| Distortions/cluster: 0.0193518 0.00592006 0.00795464 0.13624 0.144562 |
| Variance: 0.00603901 |
| Variances/cluster: 0.00159045 0.000530729 0.00775485 0.0101226 0.0101853 |
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| Initialization seed trial #6 of 10; initialization seed = 493575241 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14084.7 |
| Distortion: 1.62546 |
| Distortions/cluster: 0.144562 2.35169e-06 8.29064e-34 1.46416 0.0167407 |
| Variance: 0.0312589 |
| Variances/cluster: 0.0101853 2.25683e-07 6.43618e-32 0.0555703 0.0163203 |
| |
| Initialization seed trial #7 of 10; initialization seed = 493575242 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 19509.6 |
| Distortion: 0.240971 |
| Distortions/cluster: 0.144562 0.0012385 0.0590775 0.0193518 0.0167407 |
| Variance: 0.00463405 |
| Variances/cluster: 0.0101853 0.000108325 0.00448225 0.00159045 0.0163203 |
| |
| Initialization seed trial #8 of 10; initialization seed = 493575243 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 19098.5 |
| Distortion: 0.278186 |
| Distortions/cluster: 0.0578237 0.0590775 0.13624 0.00569292 0.0193518 |
| Variance: 0.00534973 |
| Variances/cluster: 0.0283638 0.00448225 0.0101226 0.000510367 0.00159045 |
| |
| Initialization seed trial #9 of 10; initialization seed = 493575244 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14246.5 |
| Distortion: 1.53324 |
| Distortions/cluster: 0.00795464 0.0193518 1.3956 0.104416 0.00592006 |
| Variance: 0.0294854 |
| Variances/cluster: 0.00775485 0.00159045 0.0544868 0.0512186 0.000530729 |
| |
| Initialization seed trial #10 of 10; initialization seed = 493575245 |
| |
| Initialized k-means centers using random sampling: 5 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 19135.6 |
| Distortion: 0.274746 |
| Distortions/cluster: 0.0198702 0.0193518 0.13624 0.0590775 0.040207 |
| Variance: 0.00528359 |
| Variances/cluster: 0.0193712 0.00159045 0.0101226 0.00448225 0.00330447 |
| The best initialization seed trial was #7 |
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|
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| Run number 3 of at most 5, k = 3 |
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| Initialization seed trial #1 of 10; initialization seed = 493575246 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 0.13624 1.46416 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0101226 0.0555703 |
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| Initialization seed trial #2 of 10; initialization seed = 493575247 |
| |
| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 0.13624 1.46416 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0101226 0.0555703 |
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| Initialization seed trial #3 of 10; initialization seed = 493575248 |
| |
| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 1.46416 0.13624 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0555703 0.0101226 |
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| Initialization seed trial #4 of 10; initialization seed = 493575249 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14314.9 |
| Distortion: 1.73703 |
| Distortions/cluster: 0.0590775 0.0193518 1.6586 |
| Variance: 0.0321672 |
| Variances/cluster: 0.00448225 0.00159045 0.0578873 |
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| Initialization seed trial #5 of 10; initialization seed = 493575250 |
| |
| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 1.46416 0.13624 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0555703 0.0101226 |
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| Initialization seed trial #6 of 10; initialization seed = 493575251 |
| |
| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.13624 0.144562 1.46416 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101226 0.0101853 0.0555703 |
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| Initialization seed trial #7 of 10; initialization seed = 493575252 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 1.46416 0.13624 0.144562 |
| Variance: 0.032314 |
| Variances/cluster: 0.0555703 0.0101226 0.0101853 |
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| Initialization seed trial #8 of 10; initialization seed = 493575253 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 0.13624 1.46416 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0101226 0.0555703 |
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| Initialization seed trial #9 of 10; initialization seed = 493575254 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 14300.3 |
| Distortion: 1.74496 |
| Distortions/cluster: 0.144562 0.13624 1.46416 |
| Variance: 0.032314 |
| Variances/cluster: 0.0101853 0.0101226 0.0555703 |
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| Initialization seed trial #10 of 10; initialization seed = 493575255 |
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| Initialized k-means centers using random sampling: 3 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14314.9 |
| Distortion: 1.73703 |
| Distortions/cluster: 0.0193518 1.6586 0.0590775 |
| Variance: 0.0321672 |
| Variances/cluster: 0.00159045 0.0578873 0.00448225 |
| The best initialization seed trial was #4 |
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|
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| Run number 4 of at most 5, k = 4 |
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| Initialization seed trial #1 of 10; initialization seed = 493575256 |
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| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 18581.6 |
| Distortion: 0.359231 |
| Distortions/cluster: 0.13624 0.144562 0.0193518 0.0590775 |
| Variance: 0.00677795 |
| Variances/cluster: 0.0101226 0.0101853 0.00159045 0.00448225 |
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| Initialization seed trial #2 of 10; initialization seed = 493575257 |
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| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 1 |
| BIC score: 18581.6 |
| Distortion: 0.359231 |
| Distortions/cluster: 0.0193518 0.13624 0.144562 0.0590775 |
| Variance: 0.00677795 |
| Variances/cluster: 0.00159045 0.0101226 0.0101853 0.00448225 |
| |
| Initialization seed trial #3 of 10; initialization seed = 493575258 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 18581.6 |
| Distortion: 0.359231 |
| Distortions/cluster: 0.144562 0.13624 0.0590775 0.0193518 |
| Variance: 0.00677795 |
| Variances/cluster: 0.0101853 0.0101226 0.00448225 0.00159045 |
| |
| Initialization seed trial #4 of 10; initialization seed = 493575259 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14290.2 |
| Distortion: 1.6267 |
| Distortions/cluster: 0.144562 0.0167407 1.46416 0.0012385 |
| Variance: 0.0306924 |
| Variances/cluster: 0.0101853 0.0163203 0.0555703 0.000108325 |
| |
| Initialization seed trial #5 of 10; initialization seed = 493575260 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14199 |
| Distortion: 1.68061 |
| Distortions/cluster: 4.4856e-05 1.6586 0.0150392 0.00693035 |
| Variance: 0.0317097 |
| Variances/cluster: 4.02131e-06 0.0578873 0.00123602 0.00675629 |
| |
| Initialization seed trial #6 of 10; initialization seed = 493575261 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 14290.2 |
| Distortion: 1.6267 |
| Distortions/cluster: 1.46416 0.0167407 0.0012385 0.144562 |
| Variance: 0.0306924 |
| Variances/cluster: 0.0555703 0.0163203 0.000108325 0.0101853 |
| |
| Initialization seed trial #7 of 10; initialization seed = 493575262 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 2 |
| BIC score: 18581.6 |
| Distortion: 0.359231 |
| Distortions/cluster: 0.0193518 0.0590775 0.13624 0.144562 |
| Variance: 0.00677795 |
| Variances/cluster: 0.00159045 0.00448225 0.0101226 0.0101853 |
| |
| Initialization seed trial #8 of 10; initialization seed = 493575263 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14339.6 |
| Distortion: 1.5987 |
| Distortions/cluster: 0.0281982 0.053997 0.0523522 1.46416 |
| Variance: 0.0301642 |
| Variances/cluster: 0.00226563 0.00409678 0.0510373 0.0555703 |
| |
| Initialization seed trial #9 of 10; initialization seed = 493575264 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 18581.6 |
| Distortion: 0.359231 |
| Distortions/cluster: 0.0590775 0.13624 0.144562 0.0193518 |
| Variance: 0.00677795 |
| Variances/cluster: 0.00448225 0.0101226 0.0101853 0.00159045 |
| |
| Initialization seed trial #10 of 10; initialization seed = 493575265 |
| |
| Initialized k-means centers using random sampling: 4 centers |
| Number of k-means iterations performed: 3 |
| BIC score: 14180 |
| Distortion: 1.69183 |
| Distortions/cluster: 0.0193518 0.00592006 1.6586 0.00795464 |
| Variance: 0.0319212 |
| Variances/cluster: 0.00159045 0.000530729 0.0578873 0.00775485 |
| The best initialization seed trial was #1 |
|
|
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| |
| Post-processing runs |
| |
| |
| For the BIC threshold, the best clustering was run 4 (k = 4) |
| Post-processing run 4 (k = 4) |
| Saving labels and distance from center of each input vector to file '/work/simpoint_flow/sqlite/simpoints/opt.l' |
| Saving simpoints of all non-empty clusters to file '/work/simpoint_flow/sqlite/simpoints/opt.p' |
| Saving simpoints of largest clusters making up proportion 0.99 of all weights to file '/work/simpoint_flow/sqlite/simpoints/opt.p.lpt0.99' |
| Saving weights of all non-empty clusters to file '/work/simpoint_flow/sqlite/simpoints/opt.w' |
| Saving weights of largest clusters making up proportion 0.99 of all weights to file '/work/simpoint_flow/sqlite/simpoints/opt.w.lpt0.99' |
| 0.253666 0.253666 1 |
| 0.266548 0.266548 1 |
| 0.231008 0.231008 1 |
| 0.248778 0.248778 1 |
| 0.253666 0.253666 1 |
| 0.266548 0.266548 1 |
| 0.231008 0.231008 1 |
| 0.248778 0.248778 1 |
|
|
