import pandas as pd import os import shutil def split_csv(input_file, train_file, validate_file, test_file, train_size, validate_size, test_size): # Read the input CSV file data = pd.read_csv(input_file) # Split the data into train, validate, and test subsets train_data = data.iloc[:train_size] validate_data = data.iloc[train_size:train_size + validate_size] test_data = data.iloc[train_size + validate_size:train_size + validate_size + test_size] # Save the subsets to separate CSV files train_data.to_csv(train_file, index=False) validate_data.to_csv(validate_file, index=False) test_data.to_csv(test_file, index=False) def copy_ecg_files(csv_file, destination_folder, src_folder): # Read the CSV file data = pd.read_csv(csv_file) # Create the destination folder if it doesn't exist if not os.path.exists(destination_folder): os.makedirs(destination_folder) # Copy the corresponding ECG files to the destination folder for index, row in data.iterrows(): ecg_file = str(row['patid']) + ".asc" # Replace 'ecg_filename' with the appropriate column name containing the ECG file names src_path = os.path.join(src_folder, ecg_file) dst_path = os.path.join(destination_folder, ecg_file) shutil.copy(src_path, dst_path) if __name__ == '__main__': # Set the input CSV file and the source folder dst_dir = '/work/vajira/data/deepfake_ecg_full_train_validation_test' input_file = '/work/vajira/data/Deepfake-ecg/filtered_all_normals_121977_ground_truth.csv' # Change this to the name of your CSV file train_file = f'{dst_dir}/train.csv' validate_file = f'{dst_dir}/validate.csv' test_file = f'{dst_dir}/test.csv' src_folder = '/work/vajira/data/Deepfake-ecg/filtered_all_normals_121977/from_006_chck_2500_150k_filtered_all_normals_121977' # Change this to the name of the folder containing the ECG files # Set the sizes of the train, validate, and test subsets from full size of the dataset 121977 train_size = 97581 # 80% of 121977=97581 validate_size = 12198 # 10% of 121977=12198 test_size = 12198 # 10% of 121977=12198 split_csv(input_file, train_file, validate_file, test_file, train_size, validate_size, test_size) # Call the copy_ecg_files function to copy the ECG files into the corresponding folders copy_ecg_files(train_file, f'{dst_dir}/train', src_folder) copy_ecg_files(validate_file, f'{dst_dir}/validation', src_folder) copy_ecg_files(test_file, f'{dst_dir}/test', src_folder)