Upload raw/crisprscan/varshney2015.tab
Browse files- raw/crisprscan/varshney2015.tab +103 -0
raw/crisprscan/varshney2015.tab
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
guide seq modFreq extSeq position
|
| 2 |
+
cav3-T1 GGACCAGTACAACACTAACGAGG 73.24 TGGCGGACCAGTACAACACTAACGAGGAGAAGAT chr6:42005964-42005998:-
|
| 3 |
+
cdh23-T1 GGTCACAGTGACGATTCCTCTGG 61.54 CTCTGGTCACAGTGACGATTCCTCTGGCTCCGTC chr13:42785185-42785219:-
|
| 4 |
+
coch-T1 GGAATCATAGGTCTGTCTGGTGG 33.33 CAGAGGAATCATAGGTCTGTCTGGTGGACCAGTG chr17:28731173-28731207:-
|
| 5 |
+
col11A2-T2 GGACAGAGCGCTGGAGAGAAAGG 44.64 CTTTGGACAGAGCGCTGGAGAGAAAGGACCTGTT chr19:7279653-7279687:-
|
| 6 |
+
crym-T1 GGACCACAGATCTCACAGGCTGG 42.86 ATAGGGACCACAGATCTCACAGGCTGGATTATTT chr12:10410544-10410578:-
|
| 7 |
+
crym-T2 GGGGTGAAAAAGTAAGACGGTGG 0 GCTCGGGGTGAAAAAGTAAGACGGTGGCTTGAGT chr12:10410778-10410812:-
|
| 8 |
+
ctnnb1-T1 GGTCAACCTCATCAACTACCAGG 1.43 CCGTGGTCAACCTCATCAACTACCAGGACGACGC chr16:6296233-6296267:-
|
| 9 |
+
ctnnb1-T2 GGCAGTCTGTCGTGATGGCGAGG 0 TGAAGGCAGTCTGTCGTGATGGCGAGGAATTTGA chr16:6293380-6293414:+
|
| 10 |
+
cx30.3-T1 GGGAGCACTTTATGCTCAGCTGG 9.52 GTTGGGGAGCACTTTATGCTCAGCTGGGAGGAGT chr9:21592087-21592121:+
|
| 11 |
+
cx35.4-T1 GGTCATGGTTTATGTCGTAGCGG 38.1 TCAGGGTCATGGTTTATGTCGTAGCGGCAGAAAG chr17:24833648-24833682:+
|
| 12 |
+
cx35.4-T2 GGTAGAAGCTGTCGTAGATGTGG 0 GGCAGGTAGAAGCTGTCGTAGATGTGGTGGAGGA chr17:24833978-24834012:-
|
| 13 |
+
dfna5-T1 GGAAGTGCTGTAGCAGAACTTGG 4.76 AAGTGGAAGTGCTGTAGCAGAACTTGGGCCAGGG chr16:21623337-21623371:+
|
| 14 |
+
dfna5-T2 GGAGGTGTTGGCGGTAGTGAAGG 66.67 AGACGGAGGTGTTGGCGGTAGTGAAGGAACGAAT chr16:21623975-21624009:+
|
| 15 |
+
espn-T1 GGTTGCTCAAAAGTGAGGAGGGG 0 GATTGGTTGCTCAAAAGTGAGGAGGGGGATCCTA chr8:46959774-46959808:+
|
| 16 |
+
espn-T2 GGATCTGGGCATACGGGATCAGG 34.09 GAGTGGATCTGGGCATACGGGATCAGGATGGGTT chr8:46997559-46997593:+
|
| 17 |
+
espnl-T1 GGCTGCCAGGTTTGGCCATGCGG 87.8 ATCTGGCTGCCAGGTTTGGCCATGCGGAGGCAGT chr2:23110443-23110477:+
|
| 18 |
+
espnl-T2 GGCTCCATTCTTATCCTGACAGG 47.62 CTGTGGCTCCATTCTTATCCTGACAGGACAGATC chr2:23118101-23118135:-
|
| 19 |
+
eya4-T1 GGTGGAGTCGTTTGCGAATAGGG 41.46 GTAGGGTGGAGTCGTTTGCGAATAGGGCGTGTAA chr23:31544670-31544704:+
|
| 20 |
+
eya4-T2 GGCTGTCTGTCCGGGCTGAGGGG 84.62 AGTAGGCTGTCTGTCCGGGCTGAGGGGTGGTAAA chr23:31543901-31543935:+
|
| 21 |
+
fut8-T1 GGAAGGTGGAGAATGGTGTGAGG 35.71 AGGAGGAAGGTGGAGAATGGTGTGAGGGAACTGT chr17:33918754-33918788:+
|
| 22 |
+
hif1ab-T1 GGTCATGTTCGTGTGCACGAGGG 45.45 CGCTGGTCATGTTCGTGTGCACGAGGGCAGCGAG chr20:20437571-20437605:-
|
| 23 |
+
hif1ab-T2 GGCTGTTGAGAAAGAAAGTGAGG 14.55 CCAAGGCTGTTGAGAAAGAAAGTGAGGAGACTGA chr20:20435059-20435093:-
|
| 24 |
+
hspa5-T1 GGGCGACTCTTCTGTGCAGCAGG 4.76 CATGGGGCGACTCTTCTGTGCAGCAGGACATCAA chr5:2443691-2443725:+
|
| 25 |
+
hspa5-T2 GGACGGAGAGAAAAACATCCTGG 31.82 AGAGGGACGGAGAGAAAAACATCCTGGTGTTCGA chr5:2444758-2444792:+
|
| 26 |
+
ildr1a-T1 GGGCACTAATGAGGCGGTGCTGG 33.00 AACTGGGCACTAATGAGGCGGTGCTGGGGGCCGA chr1:48466-48500:-
|
| 27 |
+
ildr1a-T2 GGCAGCAGCAGATGCAGAAGAGG 6.00 CACTGGCAGCAGCAGATGCAGAAGAGGATGATGA chr1:47731-47765:+
|
| 28 |
+
ildr1b-T1 GGCAGCTCTGAACATGAAGCAGG 13.64 ATCAGGCAGCTCTGAACATGAAGCAGGATCCAGC chr9:34458172-34458206:-
|
| 29 |
+
junbb-T2 GGGTTACGGTCACAACGACGCGG 9.3 TGTTGGGTTACGGTCACAACGACGCGGCTCTACA chr3:7769853-7769887:-
|
| 30 |
+
Kars-T1 GGTCATGCTGATTCGCCTGAAGG 9.52 CTTGGGTCATGCTGATTCGCCTGAAGGGAGGGGT chr7:67220175-67220209:-
|
| 31 |
+
krt15-T1 GGTAGATCTGAATCATGTGATGG 40 CACAGGTAGATCTGAATCATGTGATGGCTGAGAT chr11:11533554-11533588:-
|
| 32 |
+
krt15-T2 GGTGCTGGAGGAGGCTTCGGAGG 11.43 tggtggtgctggaggaggCTTCGGAGGAGGTGAT chr11:11534478-11534512:-
|
| 33 |
+
lhfpl5a-T1 GGCCTGTTCCACTACTGCATTGG 0 CTTTGGCCTGTTCCACTACTGCATTGGGAATCCC chr11:2767393-2767427:-
|
| 34 |
+
lhfpl5a-T2 GGTAGATCTTGGCAGCCTCTTGG 33.33 GTGTGGTAGATCTTGGCAGCCTCTTGGGCAGATA chr11:2767562-2767596:+
|
| 35 |
+
loxhd1a-T1 GGTAAGCTGTTCCTGGAAGGCGG 68.18 CAGTGGTAAGCTGTTCCTGGAAGGCGGCACGTTT chr21:5114914-5114948:+
|
| 36 |
+
loxhd1a-T2 GGGCCGTGAGTTAGTGCCTGTGG 38.1 AGCTGGGCCGTGAGTTAGTGCCTGTGGACGAGGC chr21:5149392-5149426:+
|
| 37 |
+
loxhd1b-T1 GGATGTGAGCGGCAGCGGGACGG 21.43 CAGGGGATGTGAGCGGCAGCGGGACGGATGCGCA chr8:713784-713818:-
|
| 38 |
+
loxhd1b-T2 GGCTGATGGGAAGACGGAGGTGG 33.33 ATGAGGCTGATGGGAAGACGGAGGTGGAGATTTA chr8:703554-703588:-
|
| 39 |
+
man1a1-T1 GGAGACAGGCCGCAGCTCGTTGG 63.27 GCTTGGAGACAGGCCGCAGCTCGTTGGATCCCCA chr20:41170408-41170442:-
|
| 40 |
+
man1a1-T2 GGTCGGCAGAAACTGGCCATGGG 42.86 GTGGGGTCGGCAGAAACTGGCCATGGGCATCAGG chr20:41299165-41299199:+
|
| 41 |
+
man1b1-T1 GGTCTCAGGCCCATTCCTCCTGG 11.76 TCGGGGTCTCAGGCCCATTCCTCCTGGCCTCATC chr21:14143277-14143311:-
|
| 42 |
+
man1b1-T2 GGAAGAGAGTGTCGCCACTCAGG 23.53 TCCAGGAAGAGAGTGTCGCCACTCAGGTGATATG chr21:14132082-14132116:+
|
| 43 |
+
man2a-T1 GGTAGAGAACGGTCAGCTGGAGG 28.57 GGCTGGTAGAGAACGGTCAGCTGGAGGTGGCTAC chr5:56463719-56463753:-
|
| 44 |
+
man2a-T2 GGACAGCTAATTCTTCCTCCTGG 64.29 CCATGGACAGCTAATTCTTCCTCCTGGCAGCCTT chr5:56438008-56438042:+
|
| 45 |
+
man2b-T1 GGTTCTGCTGTCTCCACCAGCGG 12.5 TTCTGGTTCTGCTGTCTCCACCAGCGGTAAAAGA chr11:31011901-31011935:+
|
| 46 |
+
man2b-T2 GGCTATGACGGCTTCTTCTTTGG 32.14 GATGGGCTATGACGGCTTCTTCTTTGGCCGCTTG chr11:31010227-31010261:-
|
| 47 |
+
marveld2a-T2 GGTTTAGGAGTGTGTCCCGCTGG 33.33 CACAGGTTTAGGAGTGTGTCCCGCTGGAATGTGT chr10:2928699-2928733:+
|
| 48 |
+
marveld2b-T1 GGCCCAATGCAGGATTTTGTCGG 11.9 GTTGGGCCCAATGCAGGATTTTGTCGGACTGAAG chr5:25606925-25606959:+
|
| 49 |
+
marveld2b-T2 GGTTTGGGGATGTGGCCAGCAGG 0 CAAAGGTTTGGGGATGTGGCCAGCAGGGATGTGA chr5:25607403-25607437:-
|
| 50 |
+
MSrb3-T1 GGTGTAGTCAGTATTAGGAGTGG 50 AGCGGGTGTAGTCAGTATTAGGAGTGGTCGTGTG chr4:12910411-12910445:+
|
| 51 |
+
myh9a-T1 GGTACTTATTGTAGTCCTCTAGG 61.29 AAACGGTACTTATTGTAGTCCTCTAGGCACAGCT chr6:7603017-7603051:+
|
| 52 |
+
myh9a-T2 GGGTCGTGATTTTGTTCAGAAGG 0 AAGTGGGTCGTGATTTTGTTCAGAAGGCTCAGAC chr6:7601780-7601814:-
|
| 53 |
+
myh9b-T2 GGAGCAGGCCGAGTTTGCAGTGG 6.67 CACAGGAGCAGGCCGAGTTTGCAGTGGAGGCTCT chr3:5253946-5253980:-
|
| 54 |
+
myo15aa-T1 GGTGGCACCTCAAGAGATTCAGG 4.76 CTATGGTGGCACCTCAAGAGATTCAGGCAATGGG chr3:39990935-39990969:-
|
| 55 |
+
myo15aa-T2 GGACCCTGAAGATACCGCTCTGG 50 GACAGGACCCTGAAGATACCGCTCTGGTCTTCGG chr3:39980130-39980164:+
|
| 56 |
+
myo3a-T1 GGAATCACAGCCATAGAGCTAGG 0 ATTGGGAATCACAGCCATAGAGCTAGGTGATGGA chr24:6196553-6196587:-
|
| 57 |
+
myo6a-T1 GGCCATGAAGAAGATCGGTCTGG 27.59 CAGTGGCCATGAAGAAGATCGGTCTGGATGACAC chr20:729060-729094:+
|
| 58 |
+
myo6a-T2 GGATCAAGTCTTCCCTGCTGAGG 14.29 CCGTGGATCAAGTCTTCCCTGCTGAGGATGATGT chr20:718096-718130:+
|
| 59 |
+
myo7aa-T1 GGAAGACATGATCCGGCTGGGGG 82.35 GTGTGGAAGACATGATCCGGCTGGGGGATCTGAA chr18:3113123-3113157:+
|
| 60 |
+
myo7aa-T2 GGTGCTCATGTTCACAGATAAGG 0 TGAAGGTGCTCATGTTCACAGATAAGGAGAACTG chr18:3122695-3122729:+
|
| 61 |
+
pcdh15b-T2 GGGGCTGTTGACATCGATGATGG 53.57 CAACGGGGCTGTTGACATCGATGATGGTCCTAAT chr12:6772467-6772501:-
|
| 62 |
+
pou4f3-T1 GGCCCGCGCTGAAGCTCTGGCGG 87.18 TGCTGGCCCGCGCTGAAGCTCTGGCGGCGGCTGA chr9:54791175-54791209:+
|
| 63 |
+
pou4f3-T2 GGGTTTGGTTCTGTAATCAACGG 30 GTTCGGGTTTGGTTCTGTAATCAACGGCAAAAAC chr9:54791972-54792006:+
|
| 64 |
+
prdx2-T1 GGAGTCCTGAAGGAGGACGAGGG 73.68 TTACGGAGTCCTGAAGGAGGACGAGGGCATCGCC chr1:51092216-51092250:+
|
| 65 |
+
prdx2-T2 GATCATTGCGTTCAGCGAGCGGG 57.89 CCGAGATCATTGCGTTCAGCGAGCGGGCAGCAGA chr1:51089065-51089099:+
|
| 66 |
+
prdx3-T1 GGCTCCAGCGGTCACTCAAGCGG 46.15 GATGGGCTCCAGCGGTCACTCAAGCGGCCCCTCA chr13:9512604-9512638:+
|
| 67 |
+
prdx3-T2 GGGTGTTGGTCCAGGCCAGGTGG 54 CTCGGGGTGTTGGTCCAGGCCAGGTGGGTGAAGT chr13:9516028-9516062:-
|
| 68 |
+
prdx4-T1 GGTTTTCTTCTTCTACCCTCTGG 5.88 ACCTGGTTTTCTTCTTCTACCCTCTGGACTTGTG chr5:3966623-3966657:+
|
| 69 |
+
prps1a-T1 GGATGCCGATGCAATCTTACAGG 13.95 CTCTGGATGCCGATGCAATCTTACAGGCATTGAT chr5:22633852-22633886:-
|
| 70 |
+
prps1a-T2 GGCTCCAATCTCAGCCAAGCTGG 10.64 GCCGGGCTCCAATCTCAGCCAAGCTGGTGGCCAA chr5:22634209-22634243:+
|
| 71 |
+
prps1b-T1 GGCACCGATTTCTGCTAAGTTGG 0 GTCGGGCACCGATTTCTGCTAAGTTGGTGGCAAA chr14:11789452-11789486:-
|
| 72 |
+
ptprn2-T1 GGTCAGTGTCTGAGGTATCCAGG 2.17 GTTTGGTCAGTGTCTGAGGTATCCAGGGTCAGAT chr7:40021729-40021763:+
|
| 73 |
+
ptprn2-T2 GGAGGTTGTCTGGAAGCTCCAGG 43.48 CTTTGGAGGTTGTCTGGAAGCTCCAGGCAGTTTT chr7:40047508-40047542:-
|
| 74 |
+
ptprna-T1 GGTACGGTTTGCATCCGGAGCGG 37.14 CACCGGTACGGTTTGCATCCGGAGCGGGGAGGAC chr9:7591326-7591360:-
|
| 75 |
+
ptprna-T2 GGCAGTCTTTTGAAGGGTTTCGG 58.33 GCTGGGCAGTCTTTTGAAGGGTTTCGGTGTGGAT chr9:7595638-7595672:+
|
| 76 |
+
ptprnb-T1 GGAGGCTCTGTGCTCCTACCAGG 30.61 AGTGGGAGGCTCTGTGCTCCTACCAGGCAGAACC chr6:13840527-13840561:+
|
| 77 |
+
ptprq-T1 GGTGAACGGGTCGGTTCCACCGG 35.71 TGAAGGTGAACGGGTCGGTTCCACCGGCATCCTG chr18:6186758-6186792:+
|
| 78 |
+
ptprq-T2 GGATGGGCTCGGAGTCCCACGGG 0 TCTGGGATGGGCTCGGAGTCCCACGGGATAAAAT chr18:6196477-6196511:-
|
| 79 |
+
sesn1-T1 GGTTGACCAGATACGTGCACTGG 20 TGCAGGTTGACCAGATACGTGCACTGGTGCCTAG chr20:32323104-32323138:-
|
| 80 |
+
slc26a4-T1 GGAGGACACATTGATGGAGGTGG 8.51 TGGTGGAGGACACATTGATGGAGGTGGATGTAGA chr4:18795762-18795796:+
|
| 81 |
+
slc26a4-T2 GGCGTCAGCAACATTTTCGGAGG 0 TTTTGGCGTCAGCAACATTTTCGGAGGATGTTTC chr4:18799739-18799773:+
|
| 82 |
+
slc26a5-T1 GGCCCGTGATTCCAGAAGAGTGG 27.72 TTGAGGCCCGTGATTCCAGAAGAGTGGAGGTGGT chr4:14946819-14946853:-
|
| 83 |
+
slc26a5-T2 GGCGTCCCTACTTGTGCTACTGG 7.07 TCTTGGCGTCCCTACTTGTGCTACTGGTGGTGGT chr4:14941665-14941699:-
|
| 84 |
+
smpx-T1 GGGGCTCTGCGTCCTGGAGCGGG 23.08 GATGGGGGCTCTGCGTCCTGGAGCGGGACATCCT chr24:25340322-25340356:+
|
| 85 |
+
smpx-T2 GGCAGAGGCTTCTTCTCTTCTGG 11.32 TCCAGGCAGAGGCTTCTTCTCTTCTGGAGTGACT chr24:25345690-25345724:-
|
| 86 |
+
tectaT1 GGTGAGTCAGTTCACTCCAGAGG 52.38 TTCAGGTGAGTCAGTTCACTCCAGAGGCTTTCCC chr5:62537213-62537247:-
|
| 87 |
+
tectaT2 GGCAGATGACCTCATTATCCAGG 4.76 TCATGGCAGATGACCTCATTATCCAGGTCAAGAC chr5:62536204-62536238:+
|
| 88 |
+
tjp2A-T1 GGTTGTGTTCGCTGCGAAAGCGG 12.12 TCCAGGTTGTGTTCGCTGCGAAAGCGGCGACCTC chr10:15880845-15880879:+
|
| 89 |
+
tjp2A-T2 GGACAGTCCTGCCGAGGTGGAGG 100 AAGAGGACAGTCCTGCCGAGGTGGAGGGTCTGCG chr10:15871777-15871811:-
|
| 90 |
+
tjp2b-T1 GGAAGCTATAGCCGGGACCAGGG 42.86 TGCTGGAAGCTATAGCCGGGACCAGGGCTACGAC chr8:11445520-11445554:+
|
| 91 |
+
tjp2b-T2 GGAGGAGAGAGTAGAACCACAGG 45 CTCAGGAGGAGAGAGTAGAACCACAGGATGAAGA chr8:11466440-11466474:+
|
| 92 |
+
tks5a-T1 GGTGCTGGAGCAGTACGTGGTGG 56.25 CCATGGTGCTGGAGCAGTACGTGGTGGTGGCCAA chr1:46957146-46957180:+
|
| 93 |
+
tks5a-T2 GGAGATGTGGCGCTCAGGGGTGG 45 TTTTGGAGATGTGGCGCTCAGGGGTGGTGGCTTC chr1:46988430-46988464:-
|
| 94 |
+
tmc1-T1 GGAAGTTGGCCAGCACTCTGAGG 39.29 ACCAGGAAGTTGGCCAGCACTCTGAGGAATCTTG chr5:25061072-25061106:+
|
| 95 |
+
tmc1-T2 GGCAGGCCAACTTGTACAATGGG 8.33 ATCTGGCAGGCCAACTTGTACAATGGGACTGTGC chr5:25060496-25060530:-
|
| 96 |
+
tmie-T1 GGCTTTTTCGGAGGGTCTGTTGG 37.5 GTCTGGCTTTTTCGGAGGGTCTGTTGGCAGGAGC chr2:1906150-1906184:-
|
| 97 |
+
tmie-T2 GGAAACCTCAGCACTCCTGACGG 33.93 TCGTGGAAACCTCAGCACTCCTGACGGTCTCAGA chr2:1913388-1913422:+
|
| 98 |
+
tmprss3a-T1 GGTTTCTGTTAGAGGCTCTTTGG 9.8 AGTGGGTTTCTGTTAGAGGCTCTTTGGAAGGTAC chr9:19772606-19772640:+
|
| 99 |
+
tmprss3a-T2 GGGCATTTTGACTGTGAACATGG 14 CGATGGGCATTTTGACTGTGAACATGGAGAAGAT chr9:19766555-19766589:-
|
| 100 |
+
ushc1-T1 GGTCTGATGGCATCAAACAAAGG 63.27 CAAGGGTCTGATGGCATCAAACAAAGGAAGGCGT chr25:22555549-22555583:-
|
| 101 |
+
ushc1-T2 GGTTGAAGCTCGACATGAGCTGG 0 TGGCGGTTGAAGCTCGACATGAGCTGGACAGACA chr25:22574531-22574565:+
|
| 102 |
+
wfs1b-T1 GGAGGAAACGCTGATTGTCCTGG 35.44 CTGAGGAGGAAACGCTGATTGTCCTGGAAAGGCA chr14:17027295-17027329:-
|
| 103 |
+
wfs1b-T2 GGTATTTCACCATCCATGGAAGG 0 TGAGGGTATTTCACCATCCATGGAAGGGGTAGCA chr14:17036891-17036925:+
|